Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS02225

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS02220 and DZA65_RS02225 are separated by 239 nucleotidesDZA65_RS02225 and DZA65_RS02230 are separated by 150 nucleotides DZA65_RS02220: DZA65_RS02220 - DNA cytosine methyltransferase, at 481,498 to 482,928 _RS02220 DZA65_RS02225: DZA65_RS02225 - hypothetical protein, at 483,168 to 484,481 _RS02225 DZA65_RS02230: DZA65_RS02230 - MFS transporter, at 484,632 to 486,026 _RS02230 Position (kb) 483 484 485Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 482.935 kb on - strandat 482.935 kb on - strandat 482.935 kb on - strandat 482.935 kb on - strandat 482.935 kb on - strandat 482.945 kb on - strandat 482.970 kb on - strandat 483.015 kb on - strandat 483.062 kb on + strandat 483.147 kb on + strandat 483.165 kb on - strandat 483.245 kb on + strandat 483.245 kb on + strandat 483.326 kb on + strand, within DZA65_RS02225at 483.340 kb on - strand, within DZA65_RS02225at 483.359 kb on + strand, within DZA65_RS02225at 483.471 kb on - strand, within DZA65_RS02225at 483.472 kb on + strand, within DZA65_RS02225at 483.473 kb on - strand, within DZA65_RS02225at 483.473 kb on - strand, within DZA65_RS02225at 483.516 kb on - strand, within DZA65_RS02225at 483.572 kb on + strand, within DZA65_RS02225at 483.596 kb on + strand, within DZA65_RS02225at 483.659 kb on + strand, within DZA65_RS02225at 483.681 kb on + strand, within DZA65_RS02225at 483.687 kb on + strand, within DZA65_RS02225at 483.733 kb on + strand, within DZA65_RS02225at 483.828 kb on - strand, within DZA65_RS02225at 483.863 kb on + strand, within DZA65_RS02225at 483.912 kb on - strand, within DZA65_RS02225at 484.030 kb on + strand, within DZA65_RS02225at 484.031 kb on - strand, within DZA65_RS02225at 484.034 kb on + strand, within DZA65_RS02225at 484.035 kb on - strand, within DZA65_RS02225at 484.035 kb on - strand, within DZA65_RS02225at 484.067 kb on + strand, within DZA65_RS02225at 484.068 kb on - strand, within DZA65_RS02225at 484.280 kb on - strandat 484.313 kb on + strand, within DZA65_RS02225at 484.341 kb on + strand, within DZA65_RS02225at 484.341 kb on + strand, within DZA65_RS02225at 484.344 kb on + strand, within DZA65_RS02225at 484.370 kb on + strandat 484.460 kb on - strandat 484.472 kb on + strandat 484.479 kb on + strandat 484.479 kb on + strandat 484.480 kb on - strandat 484.557 kb on + strandat 484.558 kb on - strandat 484.626 kb on - strandat 484.814 kb on + strand, within DZA65_RS02230at 484.814 kb on + strand, within DZA65_RS02230at 484.815 kb on - strand, within DZA65_RS02230at 484.815 kb on - strand, within DZA65_RS02230at 484.815 kb on - strand, within DZA65_RS02230at 484.905 kb on + strand, within DZA65_RS02230at 484.905 kb on + strand, within DZA65_RS02230at 484.905 kb on + strand, within DZA65_RS02230at 484.906 kb on - strand, within DZA65_RS02230at 484.906 kb on - strand, within DZA65_RS02230at 484.906 kb on - strand, within DZA65_RS02230at 484.906 kb on - strand, within DZA65_RS02230at 484.928 kb on + strand, within DZA65_RS02230at 484.928 kb on + strand, within DZA65_RS02230at 484.929 kb on - strand, within DZA65_RS02230at 484.929 kb on - strand, within DZA65_RS02230at 484.929 kb on - strand, within DZA65_RS02230at 485.063 kb on + strand, within DZA65_RS02230at 485.063 kb on + strand, within DZA65_RS02230at 485.064 kb on - strand, within DZA65_RS02230at 485.064 kb on - strand, within DZA65_RS02230at 485.064 kb on - strand, within DZA65_RS02230at 485.064 kb on - strand, within DZA65_RS02230at 485.064 kb on - strand, within DZA65_RS02230at 485.064 kb on - strandat 485.064 kb on - strand, within DZA65_RS02230at 485.234 kb on + strand, within DZA65_RS02230at 485.392 kb on - strand, within DZA65_RS02230at 485.450 kb on + strand, within DZA65_RS02230at 485.450 kb on + strand, within DZA65_RS02230at 485.451 kb on - strand, within DZA65_RS02230at 485.459 kb on - strand, within DZA65_RS02230

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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482,935 - -1.1
482,935 - +0.8
482,935 - -3.5
482,935 - -1.0
482,935 - +2.4
482,945 - -1.2
482,970 - +2.8
483,015 - -0.1
483,062 + -0.4
483,147 + -0.2
483,165 - -0.8
483,245 + +1.9
483,245 + +0.9
483,326 + DZA65_RS02225 0.12 -0.9
483,340 - DZA65_RS02225 0.13 -0.7
483,359 + DZA65_RS02225 0.15 +1.8
483,471 - DZA65_RS02225 0.23 +1.6
483,472 + DZA65_RS02225 0.23 -0.7
483,473 - DZA65_RS02225 0.23 +0.8
483,473 - DZA65_RS02225 0.23 -0.9
483,516 - DZA65_RS02225 0.26 +0.6
483,572 + DZA65_RS02225 0.31 -0.8
483,596 + DZA65_RS02225 0.33 +2.1
483,659 + DZA65_RS02225 0.37 -1.1
483,681 + DZA65_RS02225 0.39 +0.1
483,687 + DZA65_RS02225 0.39 -0.6
483,733 + DZA65_RS02225 0.43 -0.4
483,828 - DZA65_RS02225 0.50 -0.4
483,863 + DZA65_RS02225 0.53 +0.5
483,912 - DZA65_RS02225 0.57 -1.5
484,030 + DZA65_RS02225 0.66 -1.4
484,031 - DZA65_RS02225 0.66 +1.3
484,034 + DZA65_RS02225 0.66 +0.2
484,035 - DZA65_RS02225 0.66 +0.8
484,035 - DZA65_RS02225 0.66 +1.6
484,067 + DZA65_RS02225 0.68 +1.0
484,068 - DZA65_RS02225 0.68 +0.6
484,280 - +0.0
484,313 + DZA65_RS02225 0.87 +1.2
484,341 + DZA65_RS02225 0.89 -2.0
484,341 + DZA65_RS02225 0.89 +0.6
484,344 + DZA65_RS02225 0.89 +1.6
484,370 + -1.0
484,460 - +0.6
484,472 + -1.0
484,479 + +0.4
484,479 + +0.6
484,480 - -0.7
484,557 + -1.0
484,558 - -0.5
484,626 - +0.3
484,814 + DZA65_RS02230 0.13 +0.6
484,814 + DZA65_RS02230 0.13 +0.2
484,815 - DZA65_RS02230 0.13 +0.1
484,815 - DZA65_RS02230 0.13 +0.0
484,815 - DZA65_RS02230 0.13 +0.7
484,905 + DZA65_RS02230 0.20 +1.0
484,905 + DZA65_RS02230 0.20 -0.4
484,905 + DZA65_RS02230 0.20 -1.0
484,906 - DZA65_RS02230 0.20 +1.7
484,906 - DZA65_RS02230 0.20 -2.2
484,906 - DZA65_RS02230 0.20 +1.1
484,906 - DZA65_RS02230 0.20 -0.0
484,928 + DZA65_RS02230 0.21 -1.0
484,928 + DZA65_RS02230 0.21 -1.0
484,929 - DZA65_RS02230 0.21 -1.2
484,929 - DZA65_RS02230 0.21 -1.1
484,929 - DZA65_RS02230 0.21 -0.9
485,063 + DZA65_RS02230 0.31 -0.4
485,063 + DZA65_RS02230 0.31 +1.0
485,064 - DZA65_RS02230 0.31 -0.8
485,064 - DZA65_RS02230 0.31 -0.3
485,064 - DZA65_RS02230 0.31 -0.8
485,064 - DZA65_RS02230 0.31 -0.4
485,064 - DZA65_RS02230 0.31 -1.1
485,064 - +0.6
485,064 - DZA65_RS02230 0.31 +0.0
485,234 + DZA65_RS02230 0.43 +0.3
485,392 - DZA65_RS02230 0.54 +1.6
485,450 + DZA65_RS02230 0.59 -0.8
485,450 + DZA65_RS02230 0.59 -2.0
485,451 - DZA65_RS02230 0.59 +0.3
485,459 - DZA65_RS02230 0.59 +0.3

Or see this region's nucleotide sequence