Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00875 and DZA65_RS00880 are separated by 189 nucleotides DZA65_RS00880 and DZA65_RS00885 are separated by 289 nucleotides
DZA65_RS00875: DZA65_RS00875 - 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase, at 194,682 to 196,952
_RS00875
DZA65_RS00880: DZA65_RS00880 - dienelactone hydrolase family protein, at 197,142 to 197,969
_RS00880
DZA65_RS00885: DZA65_RS00885 - uridine phosphorylase, at 198,259 to 199,020
_RS00885
Position (kb) 197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 196.142 kb on + strand, within DZA65_RS00875 at 196.142 kb on + strand, within DZA65_RS00875 at 196.158 kb on + strand, within DZA65_RS00875 at 196.158 kb on + strand, within DZA65_RS00875 at 196.159 kb on - strand, within DZA65_RS00875 at 196.159 kb on - strand, within DZA65_RS00875 at 196.159 kb on - strand, within DZA65_RS00875 at 196.159 kb on - strand, within DZA65_RS00875 at 196.215 kb on + strand, within DZA65_RS00875 at 196.215 kb on + strand, within DZA65_RS00875 at 196.216 kb on - strand, within DZA65_RS00875 at 196.231 kb on + strand, within DZA65_RS00875 at 196.231 kb on + strand, within DZA65_RS00875 at 196.231 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand at 196.296 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand, within DZA65_RS00875 at 196.296 kb on + strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.297 kb on - strand, within DZA65_RS00875 at 196.531 kb on - strand, within DZA65_RS00875 at 196.611 kb on + strand, within DZA65_RS00875 at 196.612 kb on - strand, within DZA65_RS00875 at 196.752 kb on + strand at 196.753 kb on - strand at 196.783 kb on + strand at 196.783 kb on + strand at 196.784 kb on - strand at 196.784 kb on - strand at 196.784 kb on - strand at 196.823 kb on + strand at 196.824 kb on - strand at 196.824 kb on - strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.946 kb on + strand at 196.947 kb on - strand at 196.947 kb on - strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.950 kb on + strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.951 kb on - strand at 196.953 kb on + strand at 196.953 kb on + strand at 196.953 kb on + strand at 196.953 kb on + strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.954 kb on - strand at 196.959 kb on - strand at 196.959 kb on - strand at 196.971 kb on - strand at 196.982 kb on + strand at 196.983 kb on - strand at 196.983 kb on - strand at 197.036 kb on + strand at 197.037 kb on - strand at 197.074 kb on + strand at 197.089 kb on + strand at 197.090 kb on - strand at 197.104 kb on + strand at 197.104 kb on + strand at 197.105 kb on - strand at 197.143 kb on + strand at 197.144 kb on - strand at 197.144 kb on - strand at 197.144 kb on - strand at 197.144 kb on - strand at 197.144 kb on - strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.177 kb on + strand at 197.178 kb on - strand at 197.178 kb on - strand at 197.178 kb on - strand at 197.178 kb on - strand at 197.178 kb on - strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.212 kb on + strand at 197.213 kb on - strand at 197.213 kb on - strand at 197.213 kb on - strand at 197.213 kb on - strand at 197.213 kb on - strand at 197.257 kb on + strand, within DZA65_RS00880 at 197.482 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.647 kb on + strand, within DZA65_RS00880 at 197.648 kb on - strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.675 kb on - strand, within DZA65_RS00880 at 197.691 kb on - strand, within DZA65_RS00880 at 197.698 kb on + strand, within DZA65_RS00880 at 197.699 kb on - strand, within DZA65_RS00880 at 197.708 kb on + strand, within DZA65_RS00880 at 197.745 kb on + strand, within DZA65_RS00880 at 197.745 kb on + strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.763 kb on + strand, within DZA65_RS00880 at 197.763 kb on + strand, within DZA65_RS00880 at 197.764 kb on - strand, within DZA65_RS00880 at 197.814 kb on - strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.953 kb on - strand at 197.982 kb on - strand at 197.982 kb on - strand at 198.046 kb on + strand at 198.046 kb on + strand at 198.046 kb on + strand at 198.047 kb on - strand at 198.051 kb on + strand at 198.052 kb on - strand at 198.052 kb on - strand at 198.106 kb on + strand at 198.117 kb on + strand at 198.118 kb on - strand at 198.154 kb on + strand at 198.158 kb on + strand at 198.158 kb on + strand at 198.169 kb on + strand at 198.218 kb on + strand at 198.218 kb on + strand at 198.218 kb on + strand at 198.219 kb on - strand at 198.231 kb on + strand at 198.231 kb on + strand at 198.232 kb on - strand at 198.232 kb on - strand at 198.232 kb on - strand at 198.258 kb on + strand at 198.259 kb on - strand at 198.269 kb on + strand at 198.269 kb on + strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.439 kb on - strand, within DZA65_RS00885 at 198.471 kb on + strand, within DZA65_RS00885 at 198.472 kb on - strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.732 kb on + strand, within DZA65_RS00885 at 198.758 kb on - strand, within DZA65_RS00885 at 198.758 kb on - strand at 198.766 kb on + strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.802 kb on - strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.943 kb on - strand, within DZA65_RS00885 at 198.948 kb on + strand at 198.948 kb on + strand at 198.949 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 196,142 + DZA65_RS00875 0.64 -0.4 196,142 + DZA65_RS00875 0.64 -0.6 196,158 + DZA65_RS00875 0.65 -1.2 196,158 + DZA65_RS00875 0.65 -0.2 196,159 - DZA65_RS00875 0.65 -0.0 196,159 - DZA65_RS00875 0.65 +1.9 196,159 - DZA65_RS00875 0.65 -0.8 196,159 - DZA65_RS00875 0.65 -0.7 196,215 + DZA65_RS00875 0.68 +0.3 196,215 + DZA65_RS00875 0.68 -0.2 196,216 - DZA65_RS00875 0.68 -0.4 196,231 + DZA65_RS00875 0.68 -2.3 196,231 + DZA65_RS00875 0.68 +0.9 196,231 + DZA65_RS00875 0.68 +1.3 196,296 + DZA65_RS00875 0.71 -0.0 196,296 + DZA65_RS00875 0.71 +0.6 196,296 + -1.6 196,296 + DZA65_RS00875 0.71 +0.8 196,296 + DZA65_RS00875 0.71 -0.9 196,296 + DZA65_RS00875 0.71 +0.5 196,297 - DZA65_RS00875 0.71 +1.3 196,297 - DZA65_RS00875 0.71 -1.4 196,297 - DZA65_RS00875 0.71 +0.1 196,297 - DZA65_RS00875 0.71 -0.3 196,297 - DZA65_RS00875 0.71 +0.8 196,297 - DZA65_RS00875 0.71 -1.0 196,297 - DZA65_RS00875 0.71 -0.9 196,531 - DZA65_RS00875 0.81 -1.1 196,611 + DZA65_RS00875 0.85 +0.5 196,612 - DZA65_RS00875 0.85 -1.3 196,752 + -0.3 196,753 - -1.2 196,783 + -0.9 196,783 + -0.1 196,784 - -0.2 196,784 - -0.3 196,784 - -0.6 196,823 + +0.3 196,824 - -0.2 196,824 - -0.1 196,946 + +2.3 196,946 + -0.3 196,946 + +0.0 196,946 + +0.2 196,946 + -0.4 196,946 + -0.2 196,946 + -0.3 196,946 + -1.4 196,947 - +0.4 196,947 - +0.3 196,950 + -0.5 196,950 + -0.7 196,950 + +2.8 196,950 + -0.4 196,950 + -0.7 196,950 + +0.7 196,950 + +0.4 196,950 + -0.3 196,951 - -0.9 196,951 - +0.2 196,951 - -2.1 196,951 - +0.0 196,951 - -1.6 196,951 - -0.3 196,951 - +0.9 196,951 - +0.3 196,951 - -3.0 196,951 - -0.5 196,951 - +0.0 196,951 - +2.6 196,951 - -0.3 196,953 + +1.0 196,953 + -1.3 196,953 + -0.0 196,953 + -2.1 196,954 - -1.0 196,954 - +0.5 196,954 - +0.7 196,954 - +0.0 196,954 - -1.1 196,954 - -0.6 196,959 - -0.9 196,959 - -0.4 196,971 - -1.7 196,982 + -1.0 196,983 - +0.7 196,983 - +1.5 197,036 + +0.7 197,037 - +0.6 197,074 + -0.9 197,089 + +0.2 197,090 - -0.0 197,104 + +0.5 197,104 + +0.7 197,105 - +0.4 197,143 + -1.9 197,144 - +0.1 197,144 - +0.5 197,144 - +0.5 197,144 - +0.6 197,144 - +1.0 197,177 + -0.3 197,177 + -1.9 197,177 + +1.2 197,177 + -0.6 197,177 + -1.4 197,177 + +0.7 197,178 - +1.5 197,178 - -0.8 197,178 - -1.1 197,178 - -0.7 197,178 - +0.0 197,212 + -0.0 197,212 + -0.1 197,212 + +2.0 197,212 + -0.1 197,212 + -0.1 197,212 + +0.6 197,213 - +0.3 197,213 - -0.9 197,213 - +0.1 197,213 - -1.7 197,213 - -0.7 197,257 + DZA65_RS00880 0.14 +0.9 197,482 + DZA65_RS00880 0.41 -0.1 197,589 + DZA65_RS00880 0.54 -0.3 197,589 + DZA65_RS00880 0.54 -1.4 197,589 + DZA65_RS00880 0.54 +0.1 197,589 + DZA65_RS00880 0.54 +1.0 197,590 - DZA65_RS00880 0.54 +2.7 197,590 - DZA65_RS00880 0.54 -0.0 197,590 - DZA65_RS00880 0.54 -0.5 197,590 - DZA65_RS00880 0.54 -0.1 197,647 + DZA65_RS00880 0.61 -0.6 197,648 - DZA65_RS00880 0.61 +1.1 197,674 + DZA65_RS00880 0.64 -0.8 197,674 + DZA65_RS00880 0.64 -0.2 197,674 + DZA65_RS00880 0.64 -0.8 197,674 + DZA65_RS00880 0.64 -0.8 197,674 + DZA65_RS00880 0.64 -0.9 197,675 - DZA65_RS00880 0.64 +0.1 197,691 - DZA65_RS00880 0.66 -0.6 197,698 + DZA65_RS00880 0.67 -1.6 197,699 - DZA65_RS00880 0.67 +0.6 197,708 + DZA65_RS00880 0.68 -2.3 197,745 + DZA65_RS00880 0.73 -0.2 197,745 + DZA65_RS00880 0.73 +0.3 197,746 - DZA65_RS00880 0.73 -1.6 197,746 - DZA65_RS00880 0.73 -0.5 197,746 - DZA65_RS00880 0.73 +0.6 197,746 - DZA65_RS00880 0.73 -0.0 197,746 - DZA65_RS00880 0.73 -1.0 197,746 - DZA65_RS00880 0.73 +0.1 197,746 - DZA65_RS00880 0.73 +0.0 197,763 + DZA65_RS00880 0.75 -2.4 197,763 + DZA65_RS00880 0.75 -2.4 197,764 - DZA65_RS00880 0.75 -1.6 197,814 - DZA65_RS00880 0.81 -0.6 197,815 + DZA65_RS00880 0.81 +0.7 197,815 + DZA65_RS00880 0.81 -0.9 197,815 + DZA65_RS00880 0.81 +0.1 197,815 + DZA65_RS00880 0.81 -0.3 197,815 + DZA65_RS00880 0.81 +0.9 197,815 + DZA65_RS00880 0.81 -1.2 197,815 + DZA65_RS00880 0.81 -0.7 197,815 + DZA65_RS00880 0.81 -0.5 197,816 - DZA65_RS00880 0.81 -0.7 197,816 - DZA65_RS00880 0.81 -0.3 197,816 - DZA65_RS00880 0.81 -0.1 197,816 - DZA65_RS00880 0.81 +0.7 197,816 - DZA65_RS00880 0.81 +1.0 197,816 - DZA65_RS00880 0.81 +0.3 197,816 - DZA65_RS00880 0.81 -1.6 197,816 - DZA65_RS00880 0.81 +1.1 197,816 - DZA65_RS00880 0.81 -0.8 197,953 - +0.0 197,982 - -1.4 197,982 - +0.9 198,046 + +0.8 198,046 + -0.2 198,046 + +2.3 198,047 - +0.1 198,051 + -0.5 198,052 - -0.1 198,052 - -0.7 198,106 + +0.7 198,117 + -1.4 198,118 - -0.0 198,154 + +0.7 198,158 + +0.2 198,158 + -1.9 198,169 + -0.7 198,218 + -0.3 198,218 + -0.6 198,218 + -0.5 198,219 - +1.5 198,231 + -0.6 198,231 + +1.6 198,232 - +0.1 198,232 - -0.2 198,232 - -0.7 198,258 + -0.0 198,259 - +0.5 198,269 + +0.8 198,269 + +1.7 198,270 - +0.7 198,270 - +0.6 198,270 - -1.4 198,270 - +1.0 198,270 - -1.3 198,270 - +0.1 198,439 - DZA65_RS00885 0.24 +0.7 198,471 + DZA65_RS00885 0.28 +0.7 198,472 - DZA65_RS00885 0.28 -1.6 198,485 + DZA65_RS00885 0.30 +0.6 198,485 + DZA65_RS00885 0.30 +0.9 198,514 - DZA65_RS00885 0.33 -2.3 198,514 - DZA65_RS00885 0.33 -1.6 198,514 - DZA65_RS00885 0.33 +1.3 198,660 + DZA65_RS00885 0.53 -1.6 198,660 + DZA65_RS00885 0.53 -0.7 198,661 - DZA65_RS00885 0.53 -0.5 198,661 - DZA65_RS00885 0.53 +0.4 198,732 + DZA65_RS00885 0.62 +0.3 198,758 - DZA65_RS00885 0.65 -2.2 198,758 - -1.3 198,766 + DZA65_RS00885 0.67 +0.2 198,767 - DZA65_RS00885 0.67 -1.4 198,767 - DZA65_RS00885 0.67 -2.3 198,801 + DZA65_RS00885 0.71 -0.6 198,801 + DZA65_RS00885 0.71 -0.6 198,802 - DZA65_RS00885 0.71 -0.7 198,835 + DZA65_RS00885 0.76 +0.6 198,835 + DZA65_RS00885 0.76 -0.2 198,835 + DZA65_RS00885 0.76 -0.7 198,836 - DZA65_RS00885 0.76 +3.2 198,836 - DZA65_RS00885 0.76 +0.1 198,836 - DZA65_RS00885 0.76 -0.6 198,921 + DZA65_RS00885 0.87 +0.7 198,921 + DZA65_RS00885 0.87 -0.0 198,943 - DZA65_RS00885 0.90 -0.7 198,948 + -0.9 198,948 + +1.4 198,949 - -0.9
Or see this region's nucleotide sequence