Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00450

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
107,914	+		DZA65_RS00445	0.14	-0.6
107,914	+		DZA65_RS00445	0.14	-0.4
107,914	+		DZA65_RS00445	0.14	+1.2
107,915	-		DZA65_RS00445	0.15	+0.1
107,915	-		DZA65_RS00445	0.15	-2.1
107,983	+		DZA65_RS00445	0.22	+1.5
107,984	-		DZA65_RS00445	0.22	+0.3
107,984	-		DZA65_RS00445	0.22	-1.0
107,997	+		DZA65_RS00445	0.23	-0.4
108,018	+		DZA65_RS00445	0.26	-0.3
108,019	-		DZA65_RS00445	0.26	-2.3
108,053	+		DZA65_RS00445	0.29	+3.7
108,054	-		DZA65_RS00445	0.29	-0.5
108,054	-		DZA65_RS00445	0.29	-0.6
108,060	+		DZA65_RS00445	0.30	-0.1
108,061	-		DZA65_RS00445	0.30	-0.1
108,061	-		DZA65_RS00445	0.30	-1.4
108,061	-		DZA65_RS00445	0.30	+0.6
108,094	+		DZA65_RS00445	0.34	-0.6
108,094	+		DZA65_RS00445	0.34	-0.0
108,094	+		DZA65_RS00445	0.34	-0.0
108,095	-		DZA65_RS00445	0.34	+1.4
108,095	-		DZA65_RS00445	0.34	+0.5
108,095	-		DZA65_RS00445	0.34	-1.9
108,159	-		DZA65_RS00445	0.41	-0.7
108,160	+		DZA65_RS00445	0.41	-0.3
108,160	+		DZA65_RS00445	0.41	-0.3
108,160	+		DZA65_RS00445	0.41	+0.1
108,160	+		DZA65_RS00445	0.41	+0.1
108,160	+		DZA65_RS00445	0.41	+0.4
108,160	+		DZA65_RS00445	0.41	+0.7
108,160	+		DZA65_RS00445	0.41	+0.3
108,160	+		DZA65_RS00445	0.41	-0.0
108,161	-		DZA65_RS00445	0.41	-0.0
108,161	-		DZA65_RS00445	0.41	-2.7
108,161	-		DZA65_RS00445	0.41	-0.5
108,171	+		DZA65_RS00445	0.42	-0.7
108,171	+		DZA65_RS00445	0.42	-0.1
108,171	+		DZA65_RS00445	0.42	-1.9
108,171	+		DZA65_RS00445	0.42	-1.5
108,171	+		DZA65_RS00445	0.42	-1.1
108,171	+		DZA65_RS00445	0.42	-2.9
108,171	+		DZA65_RS00445	0.42	+0.6
108,172	-		DZA65_RS00445	0.42	+0.1
108,172	-		DZA65_RS00445	0.42	+0.9
108,172	-		DZA65_RS00445	0.42	+0.2
108,172	-		DZA65_RS00445	0.42	-0.4
108,172	-		DZA65_RS00445	0.42	-2.1
108,172	-		DZA65_RS00445	0.42	-0.6
108,172	-		DZA65_RS00445	0.42	-0.3
108,172	-		DZA65_RS00445	0.42	-0.9
108,201	+		DZA65_RS00445	0.45	+0.1
108,233	+		DZA65_RS00445	0.48	-0.9
108,233	+		DZA65_RS00445	0.48	-2.1
108,234	-		DZA65_RS00445	0.49	-0.3
108,234	-		DZA65_RS00445	0.49	-0.5
108,234	-		DZA65_RS00445	0.49	-0.1
108,247	+		DZA65_RS00445	0.50	+2.1
108,248	-		DZA65_RS00445	0.50	+0.1
108,248	-		DZA65_RS00445	0.50	-0.2
108,278	+		DZA65_RS00445	0.53	-0.2
108,278	+				+0.7
108,354	+		DZA65_RS00445	0.61	+0.1
108,355	-		DZA65_RS00445	0.61	+0.2
108,355	-		DZA65_RS00445	0.61	+0.0
108,385	+		DZA65_RS00445	0.65	+0.7
108,385	+		DZA65_RS00445	0.65	+0.7
108,385	+		DZA65_RS00445	0.65	-1.0
108,386	-		DZA65_RS00445	0.65	+1.4
108,408	-		DZA65_RS00445	0.67	+0.4
108,481	+		DZA65_RS00445	0.75	+0.7
108,481	+		DZA65_RS00445	0.75	+0.7
108,481	+		DZA65_RS00445	0.75	+0.5
108,481	+		DZA65_RS00445	0.75	-2.1
108,481	+		DZA65_RS00445	0.75	+0.5
108,481	+		DZA65_RS00445	0.75	+0.7
108,482	-		DZA65_RS00445	0.75	-1.9
108,482	-				-0.9
108,482	-		DZA65_RS00445	0.75	+0.3
108,482	-		DZA65_RS00445	0.75	+0.7
108,482	-		DZA65_RS00445	0.75	-0.1
108,485	+		DZA65_RS00445	0.75	+0.1
108,485	+		DZA65_RS00445	0.75	+0.7
108,485	+		DZA65_RS00445	0.75	-0.4
108,485	+		DZA65_RS00445	0.75	-1.5
108,485	+		DZA65_RS00445	0.75	+1.1
108,486	-		DZA65_RS00445	0.75	+0.7
108,486	-		DZA65_RS00445	0.75	-0.0
108,486	-		DZA65_RS00445	0.75	+0.4
108,486	-		DZA65_RS00445	0.75	-0.5
108,486	-		DZA65_RS00445	0.75	+0.2
108,486	-		DZA65_RS00445	0.75	+0.5
108,486	-		DZA65_RS00445	0.75	+0.9
108,486	-		DZA65_RS00445	0.75	-0.9
108,486	-		DZA65_RS00445	0.75	-0.2
108,528	+		DZA65_RS00445	0.80	-1.1
108,528	+		DZA65_RS00445	0.80	+0.3
108,528	+		DZA65_RS00445	0.80	-0.5
108,528	+		DZA65_RS00445	0.80	-1.4
108,529	-		DZA65_RS00445	0.80	+0.3
108,529	-		DZA65_RS00445	0.80	+2.0
108,529	-		DZA65_RS00445	0.80	+0.7
108,656	+				-0.0
108,657	-				-0.2
108,657	-				-0.2
108,720	+				-0.5
108,720	+				-0.1
108,721	-				-0.5
108,721	-				+0.1
108,721	-				+0.7
108,756	-				+0.6
108,756	-				+0.1
108,774	-				+0.5
108,774	-				-0.9
108,774	-				+0.7
108,816	-				-0.5
108,833	+				+1.1
108,833	+				-1.5
108,965	-		DZA65_RS00450	0.24	+2.0
108,997	+		DZA65_RS00450	0.28	+0.1
108,997	+		DZA65_RS00450	0.28	+1.0
108,997	+		DZA65_RS00450	0.28	-0.3
108,997	+		DZA65_RS00450	0.28	+1.7
108,997	+		DZA65_RS00450	0.28	-1.0
108,998	-		DZA65_RS00450	0.28	-0.6
108,998	-		DZA65_RS00450	0.28	-0.2
108,998	-		DZA65_RS00450	0.28	+0.4
108,998	-		DZA65_RS00450	0.28	+0.0
108,998	-		DZA65_RS00450	0.28	-1.0
108,998	-		DZA65_RS00450	0.28	-0.5
108,998	-		DZA65_RS00450	0.28	+0.7
108,998	-		DZA65_RS00450	0.28	+0.0
109,146	-		DZA65_RS00450	0.47	-0.9
109,304	+		DZA65_RS00450	0.67	+0.7
109,304	+		DZA65_RS00450	0.67	+0.3
109,304	+		DZA65_RS00450	0.67	+1.3
109,304	+		DZA65_RS00450	0.67	+0.3
109,304	+		DZA65_RS00450	0.67	-1.6
109,304	+		DZA65_RS00450	0.67	+1.6
109,304	+		DZA65_RS00450	0.67	+0.4
109,304	+		DZA65_RS00450	0.67	-0.6
109,304	+		DZA65_RS00450	0.67	+0.3
109,304	+		DZA65_RS00450	0.67	+2.2
109,304	+		DZA65_RS00450	0.67	-0.3
109,304	+		DZA65_RS00450	0.67	+0.3
109,305	-		DZA65_RS00450	0.67	+0.5
109,305	-		DZA65_RS00450	0.67	+1.1
109,305	-		DZA65_RS00450	0.67	+0.4
109,305	-		DZA65_RS00450	0.67	-0.3
109,305	-		DZA65_RS00450	0.67	-0.5
109,305	-		DZA65_RS00450	0.67	+1.3
109,305	-		DZA65_RS00450	0.67	+0.6
109,305	-		DZA65_RS00450	0.67	+0.2
109,305	-		DZA65_RS00450	0.67	+0.3
109,305	-		DZA65_RS00450	0.67	-0.8
109,305	-		DZA65_RS00450	0.67	+0.1
109,305	-		DZA65_RS00450	0.67	-1.1
109,305	-		DZA65_RS00450	0.67	+1.5
109,305	-		DZA65_RS00450	0.67	+1.9
109,520	+				+0.3
109,520	+				+0.2
109,520	+				+0.7
109,520	+				+1.5
109,521	-				+1.0
109,521	-				-0.3
109,521	-				-0.3
109,532	+				-0.3
109,533	-				-0.5
109,533	-				-0.3
109,533	-				-0.0
109,533	-				-0.1
109,535	+				-0.9
109,535	+				-0.9
109,535	+				-0.7
109,535	+				+1.0
109,536	-				+1.1
109,536	-				+0.9
109,536	-				-0.5
109,536	-				+0.1
109,600	+				-0.6
109,600	+				-0.9
109,601	-				+0.7
109,619	+				-2.4
109,619	+				-0.5
109,619	+				+0.1
109,619	+				+1.1
109,619	+				-0.6
109,619	+				+0.7
109,619	+				-2.1
109,619	+				-1.5
109,619	+				-0.6
109,619	+				-1.0
109,619	+				-0.3
109,619	+				+0.1
109,619	+				-1.3
109,619	+				+1.0
109,620	-				-0.8
109,620	-				-1.6
109,620	-				-0.5
109,620	-				+0.2
109,620	-				-0.7
109,620	-				-0.4
109,620	-				-0.1
109,620	-				-1.4
109,620	-				+0.7
109,620	-				+0.7
109,650	+				+0.1
109,650	+				-1.3
109,650	+				+1.7
109,651	-				+0.7
109,651	-				-1.3
109,651	-				-0.2
109,698	+				-0.0
109,698	+				-0.0
109,698	+				-0.8
109,698	+				-0.6
109,698	+				+2.5
109,698	+				+0.7
109,698	+				+0.6
109,698	+				+0.1
109,699	-				+1.1
109,699	-				-2.3
109,699	-				-0.3
109,810	+		DZA65_RS00455	0.17	-0.3
109,810	+		DZA65_RS00455	0.17	+0.1
109,810	+		DZA65_RS00455	0.17	-0.0
109,810	+		DZA65_RS00455	0.17	+0.4
109,811	-		DZA65_RS00455	0.17	+0.6
109,842	+		DZA65_RS00455	0.20	-0.0
109,842	+		DZA65_RS00455	0.20	+1.1
109,842	+		DZA65_RS00455	0.20	-0.6
109,842	+		DZA65_RS00455	0.20	-1.1
109,842	+		DZA65_RS00455	0.20	+0.9
109,863	+		DZA65_RS00455	0.22	-0.3
109,905	+		DZA65_RS00455	0.25	-0.3
109,905	+		DZA65_RS00455	0.25	+1.5
109,905	+		DZA65_RS00455	0.25	-0.2
109,905	+		DZA65_RS00455	0.25	+0.4
109,905	+		DZA65_RS00455	0.25	-1.2
109,905	+		DZA65_RS00455	0.25	+0.1
109,905	+		DZA65_RS00455	0.25	+1.5
109,905	+		DZA65_RS00455	0.25	-0.1
109,906	-		DZA65_RS00455	0.25	-2.1
109,906	-		DZA65_RS00455	0.25	+2.0
109,906	-		DZA65_RS00455	0.25	-1.2
109,906	-		DZA65_RS00455	0.25	+0.6
109,906	-		DZA65_RS00455	0.25	-1.3
109,906	-		DZA65_RS00455	0.25	-1.1
109,906	-		DZA65_RS00455	0.25	+0.7
110,017	+				-1.3
110,018	-		DZA65_RS00455	0.35	-0.3
110,095	-				+0.7
110,194	+		DZA65_RS00455	0.50	-3.4
110,194	+		DZA65_RS00455	0.50	+0.2
110,194	+		DZA65_RS00455	0.50	-0.9
110,194	+		DZA65_RS00455	0.50	+0.1
110,194	+		DZA65_RS00455	0.50	+0.1
110,194	+		DZA65_RS00455	0.50	-0.6
110,195	-		DZA65_RS00455	0.51	-0.6
110,195	-		DZA65_RS00455	0.51	-0.6
110,195	-		DZA65_RS00455	0.51	-0.5
110,195	-		DZA65_RS00455	0.51	+0.2
110,320	-		DZA65_RS00455	0.61	-0.6
110,419	+		DZA65_RS00455	0.70	-2.1
110,535	+		DZA65_RS00455	0.80	-0.5
110,535	+		DZA65_RS00455	0.80	+0.5
110,536	-		DZA65_RS00455	0.80	-0.8
110,536	-		DZA65_RS00455	0.80	-0.3
110,560	+		DZA65_RS00455	0.82	-0.3
110,560	+		DZA65_RS00455	0.82	+1.7
110,560	+		DZA65_RS00455	0.82	-0.4
110,560	+		DZA65_RS00455	0.82	-0.1
110,561	-		DZA65_RS00455	0.82	-0.2
110,561	-		DZA65_RS00455	0.82	-0.8
110,562	+		DZA65_RS00455	0.82	-0.6
110,563	-		DZA65_RS00455	0.82	-0.5
110,563	-		DZA65_RS00455	0.82	+0.4
110,563	-		DZA65_RS00455	0.82	-0.9
110,563	-		DZA65_RS00455	0.82	+0.5