Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00220 and DZA65_RS00225 are separated by 586 nucleotides DZA65_RS00225 and DZA65_RS00230 are separated by 337 nucleotides
DZA65_RS00220: DZA65_RS00220 - glycine--tRNA ligase subunit beta, at 49,894 to 51,978
_RS00220
DZA65_RS00225: DZA65_RS00225 - alpha/beta hydrolase, at 52,565 to 53,335
_RS00225
DZA65_RS00230: DZA65_RS00230 - urea carboxylase, at 53,673 to 57,266
_RS00230
Position (kb) 52
53
54 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 51.977 kb on - strand at 51.989 kb on - strand at 52.001 kb on + strand at 52.001 kb on + strand at 52.001 kb on + strand at 52.001 kb on + strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.002 kb on - strand at 52.005 kb on + strand at 52.005 kb on + strand at 52.006 kb on - strand at 52.006 kb on - strand at 52.006 kb on - strand at 52.010 kb on + strand at 52.010 kb on + strand at 52.011 kb on - strand at 52.021 kb on + strand at 52.021 kb on + strand at 52.022 kb on - strand at 52.022 kb on - strand at 52.026 kb on - strand at 52.036 kb on + strand at 52.036 kb on + strand at 52.037 kb on - strand at 52.037 kb on - strand at 52.037 kb on - strand at 52.037 kb on - strand at 52.037 kb on - strand at 52.052 kb on + strand at 52.052 kb on + strand at 52.053 kb on - strand at 52.056 kb on + strand at 52.056 kb on + strand at 52.057 kb on - strand at 52.097 kb on + strand at 52.097 kb on + strand at 52.114 kb on + strand at 52.114 kb on + strand at 52.115 kb on - strand at 52.115 kb on - strand at 52.120 kb on - strand at 52.217 kb on + strand at 52.234 kb on + strand at 52.393 kb on + strand at 52.394 kb on - strand at 52.394 kb on - strand at 52.497 kb on - strand at 52.539 kb on + strand at 52.595 kb on - strand at 52.644 kb on - strand, within DZA65_RS00225 at 52.679 kb on + strand, within DZA65_RS00225 at 52.679 kb on + strand, within DZA65_RS00225 at 52.680 kb on - strand, within DZA65_RS00225 at 52.706 kb on + strand, within DZA65_RS00225 at 52.707 kb on - strand, within DZA65_RS00225 at 52.707 kb on - strand, within DZA65_RS00225 at 52.759 kb on + strand, within DZA65_RS00225 at 52.759 kb on + strand, within DZA65_RS00225 at 52.760 kb on - strand, within DZA65_RS00225 at 52.760 kb on - strand, within DZA65_RS00225 at 52.766 kb on - strand, within DZA65_RS00225 at 52.776 kb on + strand, within DZA65_RS00225 at 52.776 kb on + strand, within DZA65_RS00225 at 52.777 kb on - strand, within DZA65_RS00225 at 52.777 kb on - strand, within DZA65_RS00225 at 52.777 kb on - strand, within DZA65_RS00225 at 52.777 kb on - strand, within DZA65_RS00225 at 52.778 kb on + strand, within DZA65_RS00225 at 52.779 kb on - strand, within DZA65_RS00225 at 52.779 kb on - strand, within DZA65_RS00225 at 52.806 kb on + strand, within DZA65_RS00225 at 52.806 kb on + strand, within DZA65_RS00225 at 52.806 kb on + strand, within DZA65_RS00225 at 52.818 kb on + strand, within DZA65_RS00225 at 52.833 kb on + strand, within DZA65_RS00225 at 52.833 kb on + strand, within DZA65_RS00225 at 52.867 kb on + strand, within DZA65_RS00225 at 52.867 kb on + strand, within DZA65_RS00225 at 52.873 kb on + strand, within DZA65_RS00225 at 52.874 kb on - strand, within DZA65_RS00225 at 52.882 kb on - strand, within DZA65_RS00225 at 52.926 kb on + strand, within DZA65_RS00225 at 52.949 kb on + strand, within DZA65_RS00225 at 52.949 kb on + strand, within DZA65_RS00225 at 52.949 kb on + strand, within DZA65_RS00225 at 52.950 kb on - strand, within DZA65_RS00225 at 52.954 kb on + strand, within DZA65_RS00225 at 52.954 kb on + strand, within DZA65_RS00225 at 52.954 kb on + strand, within DZA65_RS00225 at 52.955 kb on - strand, within DZA65_RS00225 at 52.957 kb on + strand, within DZA65_RS00225 at 52.957 kb on + strand, within DZA65_RS00225 at 52.957 kb on + strand, within DZA65_RS00225 at 52.958 kb on - strand, within DZA65_RS00225 at 52.958 kb on - strand, within DZA65_RS00225 at 52.958 kb on - strand, within DZA65_RS00225 at 53.000 kb on - strand, within DZA65_RS00225 at 53.110 kb on + strand, within DZA65_RS00225 at 53.223 kb on - strand, within DZA65_RS00225 at 53.224 kb on + strand, within DZA65_RS00225 at 53.224 kb on + strand, within DZA65_RS00225 at 53.224 kb on + strand, within DZA65_RS00225 at 53.225 kb on - strand, within DZA65_RS00225 at 53.225 kb on - strand, within DZA65_RS00225 at 53.225 kb on - strand, within DZA65_RS00225 at 53.226 kb on + strand, within DZA65_RS00225 at 53.226 kb on + strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.227 kb on - strand, within DZA65_RS00225 at 53.269 kb on + strand at 53.269 kb on + strand at 53.269 kb on + strand at 53.270 kb on - strand at 53.270 kb on - strand at 53.279 kb on + strand at 53.280 kb on - strand at 53.324 kb on + strand at 53.324 kb on + strand at 53.325 kb on - strand at 53.325 kb on - strand at 53.325 kb on - strand at 53.325 kb on - strand at 53.326 kb on + strand at 53.343 kb on - strand at 53.383 kb on - strand at 53.383 kb on - strand at 53.394 kb on - strand at 53.396 kb on + strand at 53.402 kb on + strand at 53.402 kb on + strand at 53.403 kb on - strand at 53.483 kb on + strand at 53.483 kb on + strand at 53.484 kb on - strand at 53.484 kb on - strand at 53.506 kb on + strand at 53.506 kb on + strand at 53.507 kb on - strand at 53.525 kb on + strand at 53.526 kb on - strand at 53.526 kb on - strand at 53.532 kb on + strand at 53.533 kb on - strand at 53.625 kb on - strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.637 kb on + strand at 53.638 kb on - strand at 53.638 kb on - strand at 53.638 kb on - strand at 53.638 kb on - strand at 53.643 kb on + strand at 53.643 kb on + strand at 53.643 kb on + strand at 53.643 kb on + strand at 53.644 kb on - strand at 53.644 kb on - strand at 53.703 kb on + strand at 53.703 kb on + strand at 53.703 kb on + strand at 53.704 kb on - strand at 53.704 kb on - strand at 53.754 kb on - strand at 53.862 kb on + strand at 53.863 kb on - strand at 53.863 kb on - strand at 54.061 kb on + strand, within DZA65_RS00230 at 54.160 kb on + strand, within DZA65_RS00230 at 54.160 kb on + strand, within DZA65_RS00230 at 54.160 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.240 kb on + strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.241 kb on - strand, within DZA65_RS00230 at 54.286 kb on + strand, within DZA65_RS00230 at 54.286 kb on + strand, within DZA65_RS00230 at 54.286 kb on + strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.287 kb on - strand, within DZA65_RS00230 at 54.288 kb on + strand, within DZA65_RS00230 at 54.288 kb on + strand, within DZA65_RS00230 at 54.288 kb on + strand, within DZA65_RS00230 at 54.288 kb on + strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.289 kb on - strand, within DZA65_RS00230 at 54.298 kb on + strand, within DZA65_RS00230 at 54.298 kb on + strand, within DZA65_RS00230
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 51,977 - -0.0 51,989 - -1.7 52,001 + +0.5 52,001 + +0.4 52,001 + +1.4 52,001 + +0.9 52,002 - +1.0 52,002 - +1.1 52,002 - +1.2 52,002 - +0.1 52,002 - +0.7 52,002 - -0.6 52,002 - +1.0 52,002 - -0.3 52,002 - -0.3 52,002 - -0.8 52,002 - +1.7 52,002 - -1.2 52,002 - -1.3 52,002 - +2.1 52,005 + -1.3 52,005 + +1.3 52,006 - -2.0 52,006 - +1.0 52,006 - +0.7 52,010 + +0.1 52,010 + -0.3 52,011 - -2.3 52,021 + -1.9 52,021 + -2.3 52,022 - +0.2 52,022 - -1.1 52,026 - -0.6 52,036 + -1.9 52,036 + +0.2 52,037 - -0.5 52,037 - +0.3 52,037 - -0.9 52,037 - -1.3 52,037 - -0.2 52,052 + -0.3 52,052 + -0.5 52,053 - -0.6 52,056 + -1.0 52,056 + -1.6 52,057 - -0.5 52,097 + +1.3 52,097 + -0.6 52,114 + -0.2 52,114 + -0.3 52,115 - -0.8 52,115 - -1.6 52,120 - -0.5 52,217 + +0.1 52,234 + -0.3 52,393 + +0.1 52,394 - +0.8 52,394 - -0.3 52,497 - +1.7 52,539 + +0.7 52,595 - +1.0 52,644 - DZA65_RS00225 0.10 -0.5 52,679 + DZA65_RS00225 0.15 -0.4 52,679 + DZA65_RS00225 0.15 -0.0 52,680 - DZA65_RS00225 0.15 -0.1 52,706 + DZA65_RS00225 0.18 -2.3 52,707 - DZA65_RS00225 0.18 +0.5 52,707 - DZA65_RS00225 0.18 +0.1 52,759 + DZA65_RS00225 0.25 +0.8 52,759 + DZA65_RS00225 0.25 +3.8 52,760 - DZA65_RS00225 0.25 +1.3 52,760 - DZA65_RS00225 0.25 -0.6 52,766 - DZA65_RS00225 0.26 -0.1 52,776 + DZA65_RS00225 0.27 +0.4 52,776 + DZA65_RS00225 0.27 -0.3 52,777 - DZA65_RS00225 0.27 -1.2 52,777 - DZA65_RS00225 0.27 -0.5 52,777 - DZA65_RS00225 0.27 -0.9 52,777 - DZA65_RS00225 0.27 +0.5 52,778 + DZA65_RS00225 0.28 -2.3 52,779 - DZA65_RS00225 0.28 +1.1 52,779 - DZA65_RS00225 0.28 +0.3 52,806 + DZA65_RS00225 0.31 -0.3 52,806 + DZA65_RS00225 0.31 +0.5 52,806 + DZA65_RS00225 0.31 -1.1 52,818 + DZA65_RS00225 0.33 -0.5 52,833 + DZA65_RS00225 0.35 -0.3 52,833 + DZA65_RS00225 0.35 -0.4 52,867 + DZA65_RS00225 0.39 +0.3 52,867 + DZA65_RS00225 0.39 +1.3 52,873 + DZA65_RS00225 0.40 -1.3 52,874 - DZA65_RS00225 0.40 +0.1 52,882 - DZA65_RS00225 0.41 -0.4 52,926 + DZA65_RS00225 0.47 -1.3 52,949 + DZA65_RS00225 0.50 -0.7 52,949 + DZA65_RS00225 0.50 -0.0 52,949 + DZA65_RS00225 0.50 +1.5 52,950 - DZA65_RS00225 0.50 -0.5 52,954 + DZA65_RS00225 0.50 -1.6 52,954 + DZA65_RS00225 0.50 -0.3 52,954 + DZA65_RS00225 0.50 +1.7 52,955 - DZA65_RS00225 0.51 -0.2 52,957 + DZA65_RS00225 0.51 -0.7 52,957 + DZA65_RS00225 0.51 +1.7 52,957 + DZA65_RS00225 0.51 -0.1 52,958 - DZA65_RS00225 0.51 +0.4 52,958 - DZA65_RS00225 0.51 -1.7 52,958 - DZA65_RS00225 0.51 +1.9 53,000 - DZA65_RS00225 0.56 +0.0 53,110 + DZA65_RS00225 0.71 -0.9 53,223 - DZA65_RS00225 0.85 +0.1 53,224 + DZA65_RS00225 0.85 -0.3 53,224 + DZA65_RS00225 0.85 +0.7 53,224 + DZA65_RS00225 0.85 +2.3 53,225 - DZA65_RS00225 0.86 -0.4 53,225 - DZA65_RS00225 0.86 -1.6 53,225 - DZA65_RS00225 0.86 +0.9 53,226 + DZA65_RS00225 0.86 -0.0 53,226 + DZA65_RS00225 0.86 -0.9 53,227 - DZA65_RS00225 0.86 -0.7 53,227 - DZA65_RS00225 0.86 -2.4 53,227 - DZA65_RS00225 0.86 +0.7 53,227 - DZA65_RS00225 0.86 +2.6 53,227 - DZA65_RS00225 0.86 -0.1 53,227 - DZA65_RS00225 0.86 -0.7 53,269 + -1.6 53,269 + -2.3 53,269 + -0.0 53,270 - -0.0 53,270 - -0.4 53,279 + -1.0 53,280 - +1.1 53,324 + +0.4 53,324 + -1.7 53,325 - -0.5 53,325 - +0.2 53,325 - +1.1 53,325 - -0.7 53,326 + -0.5 53,343 - +0.4 53,383 - -0.0 53,383 - +0.1 53,394 - -0.3 53,396 + +1.6 53,402 + -0.1 53,402 + -1.0 53,403 - +0.9 53,483 + +0.3 53,483 + -0.0 53,484 - +0.0 53,484 - +1.5 53,506 + -0.9 53,506 + -1.6 53,507 - -1.9 53,525 + -0.2 53,526 - +3.9 53,526 - -1.5 53,532 + +0.7 53,533 - -1.6 53,625 - +1.3 53,637 + -0.9 53,637 + -0.8 53,637 + -0.0 53,637 + -3.3 53,637 + +0.7 53,637 + +0.3 53,637 + +0.2 53,637 + -0.4 53,637 + -1.6 53,638 - -0.6 53,638 - -3.3 53,638 - +0.4 53,638 - +0.9 53,643 + +0.1 53,643 + +0.5 53,643 + -1.7 53,643 + +0.4 53,644 - +0.0 53,644 - +1.5 53,703 + -1.1 53,703 + -0.5 53,703 + +2.1 53,704 - +0.1 53,704 - -0.4 53,754 - -1.6 53,862 + +0.3 53,863 - -0.9 53,863 - +0.4 54,061 + DZA65_RS00230 0.11 +0.4 54,160 + DZA65_RS00230 0.14 +0.3 54,160 + DZA65_RS00230 0.14 +0.3 54,160 + DZA65_RS00230 0.14 -0.6 54,240 + DZA65_RS00230 0.16 -1.3 54,240 + DZA65_RS00230 0.16 -0.5 54,240 + DZA65_RS00230 0.16 -1.9 54,240 + DZA65_RS00230 0.16 -1.0 54,240 + DZA65_RS00230 0.16 -2.1 54,241 - DZA65_RS00230 0.16 +2.1 54,241 - DZA65_RS00230 0.16 +0.5 54,241 - DZA65_RS00230 0.16 -1.1 54,241 - DZA65_RS00230 0.16 -0.4 54,241 - DZA65_RS00230 0.16 -0.3 54,241 - DZA65_RS00230 0.16 +0.1 54,286 + DZA65_RS00230 0.17 +1.6 54,286 + DZA65_RS00230 0.17 +0.3 54,286 + DZA65_RS00230 0.17 -0.9 54,287 - DZA65_RS00230 0.17 -0.4 54,287 - DZA65_RS00230 0.17 +0.2 54,287 - DZA65_RS00230 0.17 -0.5 54,287 - DZA65_RS00230 0.17 -0.6 54,287 - DZA65_RS00230 0.17 +0.1 54,288 + DZA65_RS00230 0.17 -0.7 54,288 + DZA65_RS00230 0.17 +0.5 54,288 + DZA65_RS00230 0.17 -0.4 54,288 + DZA65_RS00230 0.17 +2.1 54,289 - DZA65_RS00230 0.17 -2.4 54,289 - DZA65_RS00230 0.17 -0.8 54,289 - DZA65_RS00230 0.17 -0.3 54,289 - DZA65_RS00230 0.17 -2.1 54,289 - DZA65_RS00230 0.17 +1.2 54,289 - DZA65_RS00230 0.17 -0.0 54,289 - DZA65_RS00230 0.17 +0.9 54,289 - DZA65_RS00230 0.17 -1.1 54,298 + DZA65_RS00230 0.17 +0.1 54,298 + DZA65_RS00230 0.17 -2.0
Or see this region's nucleotide sequence