Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00200 and DZA65_RS00205 overlap by 4 nucleotides DZA65_RS00205 and DZA65_RS00210 are separated by 239 nucleotides DZA65_RS00210 and DZA65_RS00215 are separated by 144 nucleotides
DZA65_RS00200: DZA65_RS00200 - N-acetyltransferase, at 46,767 to 47,222
_RS00200
DZA65_RS00205: DZA65_RS00205 - DNA-3-methyladenine glycosylase I, at 47,219 to 47,779
_RS00205
DZA65_RS00210: DZA65_RS00210 - sulfite exporter TauE/SafE family protein, at 48,019 to 48,825
_RS00210
DZA65_RS00215: DZA65_RS00215 - glycine--tRNA ligase subunit alpha, at 48,970 to 49,884
_RS00215
Position (kb) 48
49 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 47.065 kb on + strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.065 kb on + strand, within DZA65_RS00200 at 47.092 kb on + strand, within DZA65_RS00200 at 47.092 kb on + strand, within DZA65_RS00200 at 47.093 kb on - strand, within DZA65_RS00200 at 47.093 kb on - strand, within DZA65_RS00200 at 47.141 kb on + strand, within DZA65_RS00200 at 47.142 kb on - strand, within DZA65_RS00200 at 47.176 kb on - strand, within DZA65_RS00200 at 47.176 kb on - strand, within DZA65_RS00200 at 47.285 kb on - strand, within DZA65_RS00205 at 47.312 kb on - strand, within DZA65_RS00205 at 47.405 kb on - strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.434 kb on + strand, within DZA65_RS00205 at 47.435 kb on - strand, within DZA65_RS00205 at 47.435 kb on - strand, within DZA65_RS00205 at 47.495 kb on - strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.497 kb on + strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.498 kb on - strand, within DZA65_RS00205 at 47.522 kb on + strand, within DZA65_RS00205 at 47.522 kb on + strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.523 kb on - strand, within DZA65_RS00205 at 47.733 kb on + strand at 47.733 kb on + strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.734 kb on - strand at 47.742 kb on + strand at 47.743 kb on - strand at 47.819 kb on + strand at 47.819 kb on + strand at 47.820 kb on - strand at 47.820 kb on - strand at 47.820 kb on - strand at 47.835 kb on + strand at 47.836 kb on - strand at 47.836 kb on - strand at 47.852 kb on - strand at 47.852 kb on - strand at 47.861 kb on + strand at 47.862 kb on - strand at 47.870 kb on + strand at 47.925 kb on + strand at 47.926 kb on - strand at 47.926 kb on - strand at 47.926 kb on - strand at 47.972 kb on + strand at 47.972 kb on + strand at 47.972 kb on + strand at 47.973 kb on - strand at 47.973 kb on - strand at 47.998 kb on + strand at 47.998 kb on + strand at 47.999 kb on - strand at 47.999 kb on - strand at 47.999 kb on - strand at 47.999 kb on - strand at 48.000 kb on + strand at 48.001 kb on - strand at 48.001 kb on - strand at 48.017 kb on + strand at 48.017 kb on + strand at 48.018 kb on - strand at 48.018 kb on - strand at 48.018 kb on - strand at 48.043 kb on + strand at 48.044 kb on - strand at 48.044 kb on - strand at 48.072 kb on + strand at 48.072 kb on + strand at 48.073 kb on - strand at 48.073 kb on - strand at 48.073 kb on - strand at 48.084 kb on - strand at 48.084 kb on - strand at 48.090 kb on + strand at 48.105 kb on + strand, within DZA65_RS00210 at 48.105 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.108 kb on + strand, within DZA65_RS00210 at 48.109 kb on - strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.183 kb on + strand, within DZA65_RS00210 at 48.184 kb on - strand, within DZA65_RS00210 at 48.228 kb on + strand, within DZA65_RS00210 at 48.229 kb on - strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.373 kb on + strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.374 kb on - strand, within DZA65_RS00210 at 48.607 kb on + strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.608 kb on - strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.658 kb on + strand, within DZA65_RS00210 at 48.659 kb on - strand, within DZA65_RS00210 at 48.659 kb on - strand, within DZA65_RS00210 at 48.659 kb on - strand, within DZA65_RS00210 at 48.776 kb on + strand at 48.776 kb on + strand at 48.776 kb on + strand at 48.858 kb on + strand at 48.858 kb on + strand at 48.858 kb on + strand at 48.858 kb on + strand at 48.859 kb on - strand at 48.859 kb on - strand at 48.865 kb on + strand at 48.866 kb on - strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.899 kb on + strand at 48.900 kb on - strand at 48.900 kb on - strand at 48.900 kb on - strand at 48.900 kb on - strand at 48.900 kb on - strand at 48.900 kb on - strand at 48.901 kb on + strand at 48.901 kb on + strand at 48.901 kb on + strand at 48.901 kb on + strand at 48.901 kb on + strand at 48.901 kb on + strand at 48.901 kb on + strand at 48.919 kb on + strand at 48.919 kb on + strand at 48.921 kb on + strand at 48.921 kb on + strand at 48.938 kb on + strand at 48.938 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 47,065 + DZA65_RS00200 0.65 +0.9 47,065 + DZA65_RS00200 0.65 +0.7 47,065 + DZA65_RS00200 0.65 +2.3 47,065 + DZA65_RS00200 0.65 -1.6 47,092 + DZA65_RS00200 0.71 +0.7 47,092 + DZA65_RS00200 0.71 +0.0 47,093 - DZA65_RS00200 0.71 -0.2 47,093 - DZA65_RS00200 0.71 -0.3 47,141 + DZA65_RS00200 0.82 -1.5 47,142 - DZA65_RS00200 0.82 +0.5 47,176 - DZA65_RS00200 0.90 +0.3 47,176 - DZA65_RS00200 0.90 -0.5 47,285 - DZA65_RS00205 0.12 +1.5 47,312 - DZA65_RS00205 0.17 -2.3 47,405 - DZA65_RS00205 0.33 +1.1 47,434 + DZA65_RS00205 0.38 +1.0 47,434 + DZA65_RS00205 0.38 -0.0 47,434 + DZA65_RS00205 0.38 +0.5 47,434 + DZA65_RS00205 0.38 +0.0 47,435 - DZA65_RS00205 0.39 -0.5 47,435 - DZA65_RS00205 0.39 -0.4 47,495 - DZA65_RS00205 0.49 -2.3 47,497 + DZA65_RS00205 0.50 +1.0 47,497 + DZA65_RS00205 0.50 +0.7 47,497 + DZA65_RS00205 0.50 +0.3 47,497 + DZA65_RS00205 0.50 -1.9 47,497 + DZA65_RS00205 0.50 +0.3 47,498 - DZA65_RS00205 0.50 +1.3 47,498 - DZA65_RS00205 0.50 -0.4 47,498 - DZA65_RS00205 0.50 -0.3 47,498 - DZA65_RS00205 0.50 +1.7 47,498 - DZA65_RS00205 0.50 -0.4 47,522 + DZA65_RS00205 0.54 -1.1 47,522 + DZA65_RS00205 0.54 +2.5 47,523 - DZA65_RS00205 0.54 -0.4 47,523 - DZA65_RS00205 0.54 +0.9 47,523 - DZA65_RS00205 0.54 +0.2 47,523 - DZA65_RS00205 0.54 +2.5 47,733 + -0.1 47,733 + +0.7 47,734 - +0.3 47,734 - +0.5 47,734 - +0.3 47,734 - -0.5 47,734 - -1.9 47,734 - -0.1 47,742 + -1.6 47,743 - +0.6 47,819 + -0.0 47,819 + -1.9 47,820 - +0.6 47,820 - +0.3 47,820 - +0.4 47,835 + -0.9 47,836 - -2.7 47,836 - -2.1 47,852 - +1.1 47,852 - +0.6 47,861 + -1.9 47,862 - +0.1 47,870 + +0.7 47,925 + -0.0 47,926 - -0.6 47,926 - +0.7 47,926 - +1.6 47,972 + -0.2 47,972 + -0.8 47,972 + -1.3 47,973 - -2.1 47,973 - +1.6 47,998 + +0.7 47,998 + -2.0 47,999 - +0.7 47,999 - +1.5 47,999 - +0.7 47,999 - +0.7 48,000 + -0.0 48,001 - -1.2 48,001 - -1.4 48,017 + +0.6 48,017 + +0.3 48,018 - +0.7 48,018 - -0.1 48,018 - +0.7 48,043 + +0.1 48,044 - -0.3 48,044 - +1.1 48,072 + +0.1 48,072 + +0.2 48,073 - +0.1 48,073 - -0.4 48,073 - -1.3 48,084 - -0.2 48,084 - +0.3 48,090 + -1.1 48,105 + DZA65_RS00210 0.11 +0.6 48,105 + DZA65_RS00210 0.11 -0.2 48,108 + DZA65_RS00210 0.11 -0.5 48,108 + DZA65_RS00210 0.11 -1.6 48,108 + DZA65_RS00210 0.11 +1.5 48,108 + DZA65_RS00210 0.11 -1.0 48,108 + DZA65_RS00210 0.11 -0.3 48,109 - DZA65_RS00210 0.11 -0.5 48,183 + DZA65_RS00210 0.20 -0.2 48,183 + DZA65_RS00210 0.20 -1.9 48,183 + DZA65_RS00210 0.20 +0.3 48,183 + DZA65_RS00210 0.20 -0.6 48,183 + DZA65_RS00210 0.20 -0.7 48,184 - DZA65_RS00210 0.20 -0.6 48,228 + DZA65_RS00210 0.26 -1.0 48,229 - DZA65_RS00210 0.26 -0.1 48,373 + DZA65_RS00210 0.44 +0.7 48,373 + DZA65_RS00210 0.44 -0.6 48,373 + DZA65_RS00210 0.44 -0.4 48,373 + DZA65_RS00210 0.44 +1.2 48,373 + DZA65_RS00210 0.44 +1.0 48,373 + DZA65_RS00210 0.44 -0.6 48,373 + DZA65_RS00210 0.44 -0.9 48,374 - DZA65_RS00210 0.44 -0.2 48,374 - DZA65_RS00210 0.44 +1.3 48,374 - DZA65_RS00210 0.44 -0.3 48,374 - DZA65_RS00210 0.44 -1.1 48,374 - DZA65_RS00210 0.44 -0.4 48,374 - DZA65_RS00210 0.44 -0.4 48,374 - DZA65_RS00210 0.44 -0.4 48,607 + DZA65_RS00210 0.73 -0.3 48,608 - DZA65_RS00210 0.73 -1.0 48,608 - DZA65_RS00210 0.73 +0.7 48,608 - DZA65_RS00210 0.73 +0.1 48,608 - DZA65_RS00210 0.73 -2.4 48,608 - DZA65_RS00210 0.73 -1.3 48,608 - DZA65_RS00210 0.73 +0.1 48,658 + DZA65_RS00210 0.79 -0.6 48,658 + DZA65_RS00210 0.79 -0.6 48,658 + DZA65_RS00210 0.79 -0.1 48,658 + DZA65_RS00210 0.79 -2.4 48,658 + DZA65_RS00210 0.79 +1.4 48,658 + DZA65_RS00210 0.79 -0.3 48,659 - DZA65_RS00210 0.79 -1.6 48,659 - DZA65_RS00210 0.79 -2.4 48,659 - DZA65_RS00210 0.79 -0.3 48,776 + -3.9 48,776 + -0.8 48,776 + +4.1 48,858 + +0.2 48,858 + -1.3 48,858 + +0.9 48,858 + -0.2 48,859 - +0.7 48,859 - +2.5 48,865 + +0.7 48,866 - -0.3 48,899 + -0.2 48,899 + -1.4 48,899 + -0.1 48,899 + +0.7 48,899 + +1.1 48,899 + -1.6 48,899 + +1.4 48,899 + -0.6 48,899 + -0.0 48,899 + -0.6 48,899 + +0.3 48,900 - -0.3 48,900 - -0.3 48,900 - -2.7 48,900 - -1.6 48,900 - -0.9 48,900 - +0.2 48,901 + +0.7 48,901 + -1.3 48,901 + +0.7 48,901 + -0.6 48,901 + +0.7 48,901 + -1.7 48,901 + +1.6 48,919 + +0.5 48,919 + -0.6 48,921 + +1.1 48,921 + +0.1 48,938 + -1.0 48,938 + -0.6
Or see this region's nucleotide sequence