Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21510

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,652,610	+		DZA65_RS21505	0.50	-0.5
4,652,610	+		DZA65_RS21505	0.50	+0.6
4,652,611	-		DZA65_RS21505	0.50	+3.3
4,652,611	-		DZA65_RS21505	0.50	+0.0
4,652,656	+		DZA65_RS21505	0.54	+1.0
4,652,656	+		DZA65_RS21505	0.54	-1.2
4,652,656	+		DZA65_RS21505	0.54	-1.5
4,652,656	+		DZA65_RS21505	0.54	-0.5
4,652,656	+		DZA65_RS21505	0.54	-0.5
4,652,657	-		DZA65_RS21505	0.54	-0.3
4,652,657	-		DZA65_RS21505	0.54	-0.5
4,652,657	-		DZA65_RS21505	0.54	+0.5
4,652,657	-		DZA65_RS21505	0.54	+0.3
4,652,657	-		DZA65_RS21505	0.54	+0.4
4,652,657	-		DZA65_RS21505	0.54	-0.2
4,652,804	-		DZA65_RS21505	0.65	-1.8
4,652,804	-		DZA65_RS21505	0.65	+0.7
4,652,804	-		DZA65_RS21505	0.65	-1.5
4,652,804	-		DZA65_RS21505	0.65	+0.5
4,652,804	-		DZA65_RS21505	0.65	-0.9
4,652,965	+		DZA65_RS21505	0.77	+0.1
4,652,965	+		DZA65_RS21505	0.77	-0.4
4,652,965	+		DZA65_RS21505	0.77	-1.2
4,652,965	+		DZA65_RS21505	0.77	+1.1
4,652,966	-		DZA65_RS21505	0.77	-0.8
4,652,966	-		DZA65_RS21505	0.77	-1.2
4,652,966	-		DZA65_RS21505	0.77	+0.3
4,652,966	-		DZA65_RS21505	0.77	-0.8
4,652,966	-		DZA65_RS21505	0.77	+0.3
4,652,966	-		DZA65_RS21505	0.77	-0.7
4,653,002	+		DZA65_RS21505	0.80	+0.2
4,653,002	+		DZA65_RS21505	0.80	-0.8
4,653,002	+		DZA65_RS21505	0.80	-0.2
4,653,003	-		DZA65_RS21505	0.80	-0.2
4,653,003	-		DZA65_RS21505	0.80	+1.4
4,653,127	+		DZA65_RS21505	0.89	-1.3
4,653,127	+		DZA65_RS21505	0.89	+0.6
4,653,127	+		DZA65_RS21505	0.89	-1.4
4,653,127	+		DZA65_RS21505	0.89	-0.9
4,653,127	+		DZA65_RS21505	0.89	-0.4
4,653,127	+		DZA65_RS21505	0.89	-0.2
4,653,128	-		DZA65_RS21505	0.89	+1.2
4,653,128	-		DZA65_RS21505	0.89	+0.3
4,653,156	+				+2.2
4,653,156	+				-0.6
4,653,156	+				+0.8
4,653,156	+				-1.8
4,653,157	-				-2.1
4,653,157	-				+0.0
4,653,157	-				-1.8
4,653,162	-				-0.2
4,653,162	-				+0.8
4,653,209	+				+0.0
4,653,209	+				-2.6
4,653,209	+				+0.1
4,653,210	-				+2.2
4,653,210	-				-0.2
4,653,210	-				+0.2
4,653,210	-				-1.2
4,653,210	-				-1.0
4,653,210	-				+1.2
4,653,210	-				+0.6
4,653,214	-				+0.5
4,653,214	-				-0.6
4,653,214	-				+3.3
4,653,262	+				+0.1
4,653,263	-				-1.7
4,653,263	-				+0.1
4,653,267	+				-1.3
4,653,267	+				-1.2
4,653,267	+				+0.3
4,653,267	+				+0.0
4,653,267	+				-0.2
4,653,267	+				-1.8
4,653,267	+				-0.8
4,653,267	+				-0.5
4,653,267	+				-0.9
4,653,267	+				-0.8
4,653,267	+				+0.8
4,653,268	-				-0.1
4,653,268	-				-2.2
4,653,268	-				+0.1
4,653,268	-				+1.2
4,653,268	-				-0.8
4,653,268	-				+1.3
4,653,268	-				+0.2
4,653,268	-				+0.6
4,653,269	+				-0.6
4,653,269	+				-0.0
4,653,270	-				+0.8
4,653,270	-				-0.9
4,653,270	-				+0.2
4,653,336	+				-1.2
4,653,356	-				-0.8
4,653,356	-				-0.5
4,653,392	+				+0.4
4,653,393	-				-0.8
4,653,393	-				+0.8
4,653,395	+				-0.4
4,653,395	+				-0.3
4,653,396	-				+0.2
4,653,396	-				-0.8
4,653,396	-				+1.0
4,653,396	-				+0.0
4,653,396	-				-1.2
4,653,405	+				-0.8
4,653,446	+				+0.1
4,653,446	+				-1.5
4,653,446	+				-2.0
4,653,446	+				+0.2
4,653,446	+				+1.2
4,653,446	+				-1.0
4,653,446	+				-2.2
4,653,446	+				+0.3
4,653,447	-				-0.8
4,653,447	-				-1.3
4,653,447	-				-1.2
4,653,447	-				+0.1
4,653,447	-				-0.2
4,653,447	-				-1.6
4,653,447	-				-3.1
4,653,447	-				+0.2
4,653,447	-				-0.9
4,653,447	-				-0.2
4,653,447	-				-0.9
4,653,447	-				-1.8
4,653,447	-				-0.8
4,653,447	-				-0.8
4,653,447	-				-0.5
4,653,447	-				-1.5
4,653,627	+		DZA65_RS21510	0.22	-1.2
4,653,715	+		DZA65_RS21510	0.31	-1.5
4,653,715	+		DZA65_RS21510	0.31	+0.2
4,653,715	+		DZA65_RS21510	0.31	+0.4
4,653,715	+		DZA65_RS21510	0.31	+0.3
4,653,715	+		DZA65_RS21510	0.31	-0.8
4,653,715	+		DZA65_RS21510	0.31	+0.8
4,653,716	-		DZA65_RS21510	0.31	-2.0
4,653,716	-		DZA65_RS21510	0.31	+0.8
4,653,716	-		DZA65_RS21510	0.31	-0.4
4,653,719	+		DZA65_RS21510	0.32	-1.2
4,653,719	+		DZA65_RS21510	0.32	-0.8
4,653,719	+		DZA65_RS21510	0.32	-2.0
4,653,720	-		DZA65_RS21510	0.32	-0.4
4,653,720	-		DZA65_RS21510	0.32	+1.8
4,653,720	-		DZA65_RS21510	0.32	-1.0
4,653,720	-		DZA65_RS21510	0.32	-0.9
4,653,734	+		DZA65_RS21510	0.33	-1.0
4,653,848	+		DZA65_RS21510	0.46	-0.4
4,653,848	+		DZA65_RS21510	0.46	-1.3
4,653,848	+		DZA65_RS21510	0.46	-3.2
4,653,852	+		DZA65_RS21510	0.46	+1.0
4,653,852	+		DZA65_RS21510	0.46	-0.8
4,653,852	+		DZA65_RS21510	0.46	-2.0
4,653,852	+		DZA65_RS21510	0.46	-2.5
4,653,852	+		DZA65_RS21510	0.46	-0.2
4,653,852	+		DZA65_RS21510	0.46	+0.8
4,653,852	+		DZA65_RS21510	0.46	+0.3
4,653,852	+		DZA65_RS21510	0.46	-0.2
4,653,852	+		DZA65_RS21510	0.46	-1.3
4,653,852	+		DZA65_RS21510	0.46	+0.7
4,653,852	+		DZA65_RS21510	0.46	-1.3
4,653,852	+		DZA65_RS21510	0.46	-1.3
4,653,853	-		DZA65_RS21510	0.46	-0.7
4,653,853	-		DZA65_RS21510	0.46	-0.5
4,653,853	-		DZA65_RS21510	0.46	+0.8
4,653,853	-		DZA65_RS21510	0.46	-1.5
4,653,853	-		DZA65_RS21510	0.46	-1.3
4,653,853	-		DZA65_RS21510	0.46	-2.3
4,653,853	-		DZA65_RS21510	0.46	-2.5
4,653,854	+		DZA65_RS21510	0.46	-0.9
4,653,879	+		DZA65_RS21510	0.49	+1.1
4,653,879	+		DZA65_RS21510	0.49	-1.3
4,653,879	+		DZA65_RS21510	0.49	+0.4
4,653,879	+		DZA65_RS21510	0.49	+0.1
4,653,879	+		DZA65_RS21510	0.49	-0.6
4,653,879	+		DZA65_RS21510	0.49	-0.2
4,653,879	+		DZA65_RS21510	0.49	-0.8
4,653,879	+		DZA65_RS21510	0.49	-0.6
4,653,879	+		DZA65_RS21510	0.49	-0.2
4,653,879	+		DZA65_RS21510	0.49	-0.6
4,653,880	-		DZA65_RS21510	0.49	+1.4
4,653,880	-		DZA65_RS21510	0.49	-1.8
4,653,880	-		DZA65_RS21510	0.49	+0.0
4,653,880	-		DZA65_RS21510	0.49	-0.8
4,653,942	+				-1.2
4,653,943	-		DZA65_RS21510	0.56	-0.0
4,653,945	+		DZA65_RS21510	0.56	-0.4
4,653,945	+		DZA65_RS21510	0.56	-0.6
4,653,945	+		DZA65_RS21510	0.56	+1.2
4,653,945	+		DZA65_RS21510	0.56	+0.2
4,653,946	-		DZA65_RS21510	0.56	-2.0
4,653,946	-		DZA65_RS21510	0.56	-1.7
4,653,946	-		DZA65_RS21510	0.56	+0.8
4,653,946	-		DZA65_RS21510	0.56	+1.8
4,653,946	-		DZA65_RS21510	0.56	+0.4
4,654,118	+		DZA65_RS21510	0.75	+0.7
4,654,118	+		DZA65_RS21510	0.75	-1.2
4,654,119	-		DZA65_RS21510	0.75	-1.3
4,654,119	-		DZA65_RS21510	0.75	+2.0
4,654,171	-		DZA65_RS21510	0.81	-0.5
4,654,171	-		DZA65_RS21510	0.81	-0.5
4,654,171	-		DZA65_RS21510	0.81	-0.2
4,654,171	-		DZA65_RS21510	0.81	-2.2
4,654,178	+		DZA65_RS21510	0.82	-2.6
4,654,178	+		DZA65_RS21510	0.82	+0.2
4,654,178	+		DZA65_RS21510	0.82	-1.8
4,654,178	+		DZA65_RS21510	0.82	-1.8
4,654,178	+		DZA65_RS21510	0.82	-2.0
4,654,179	-		DZA65_RS21510	0.82	-1.3
4,654,179	-		DZA65_RS21510	0.82	-2.5
4,654,179	-		DZA65_RS21510	0.82	-2.3
4,654,179	-		DZA65_RS21510	0.82	-1.3
4,654,179	-		DZA65_RS21510	0.82	-0.8
4,654,199	+		DZA65_RS21510	0.84	-2.0
4,654,199	+		DZA65_RS21510	0.84	+0.1
4,654,199	+		DZA65_RS21510	0.84	-1.2
4,654,199	+		DZA65_RS21510	0.84	-1.2
4,654,334	-				+0.6
4,654,344	+				-0.4
4,654,345	-				-1.8
4,654,382	-				-0.4
4,654,463	+				+0.4
4,654,463	+				-1.0
4,654,463	+				-1.8
4,654,463	+				+1.6
4,654,464	-				-0.9
4,654,464	-				+1.4
4,654,464	-				-0.9
4,654,465	+				+0.8
4,654,465	+				-1.3
4,654,465	+				-0.2
4,654,465	+				+1.4
4,654,465	+				+2.9
4,654,465	+				+0.1
4,654,466	-				-1.5
4,654,466	-				+0.3
4,654,466	-				-0.9
4,654,466	-				-0.0
4,654,466	-				-1.3
4,654,466	-				-0.8
4,654,466	-				+2.6
4,654,466	-				-0.7
4,654,466	-				+0.3
4,654,466	-				-0.3
4,654,499	+				+0.0
4,654,499	+				+0.8
4,654,499	+				+1.6
4,654,500	-				+2.1
4,654,500	-				+0.8
4,654,500	-				+0.9
4,654,500	-				+0.8
4,654,505	+				+2.5
4,654,505	+				+0.6
4,654,506	-				-0.4
4,654,512	+				+0.3
4,654,512	+				+0.2
4,654,512	+				-0.4
4,654,513	-				+0.3
4,654,513	-				+0.1
4,654,513	-				-1.8
4,654,513	-				-0.4
4,654,513	-				-2.0
4,654,513	-				-0.1
4,654,517	+				-0.2
4,654,517	+				-0.7
4,654,517	+				-0.3
4,654,518	-				+0.1
4,654,518	-				+1.0
4,654,518	-				-3.1
4,654,518	-				-0.8
4,654,535	+				-0.7
4,654,535	+				+0.8
4,654,535	+				-0.8
4,654,535	+				+0.8
4,654,535	+				+1.4
4,654,535	+				-2.2
4,654,535	+				-1.0
4,654,535	+				+1.5
4,654,536	-				+0.4
4,654,536	-				-0.8
4,654,536	-				-0.4
4,654,539	+				-0.2
4,654,539	+				-0.2
4,654,539	+				+1.1
4,654,539	+				+0.8
4,654,539	+				+0.9
4,654,539	+				+0.5
4,654,539	+				+1.5
4,654,539	+				-0.3
4,654,539	+				-0.4
4,654,540	-				+0.8
4,654,540	-				+0.6
4,654,540	-				-0.1
4,654,540	-				+0.1
4,654,540	-				+0.1
4,654,540	-				-0.8
4,654,540	-				-1.2
4,654,540	-				+0.8
4,654,540	-				+0.0
4,654,540	-				-1.2
4,654,540	-				-0.9
4,654,540	-				-0.3
4,654,540	-				+0.2
4,654,592	+		DZA65_RS21515	0.18	-2.2
4,654,592	+		DZA65_RS21515	0.18	-0.5
4,654,592	+		DZA65_RS21515	0.18	-3.2
4,654,592	+		DZA65_RS21515	0.18	-0.5
4,654,592	+		DZA65_RS21515	0.18	+0.2
4,654,593	-		DZA65_RS21515	0.18	+0.4
4,654,593	-		DZA65_RS21515	0.18	+0.8
4,654,593	-		DZA65_RS21515	0.18	+0.5
4,654,593	-		DZA65_RS21515	0.18	-1.0
4,654,593	-		DZA65_RS21515	0.18	+1.6
4,654,593	-		DZA65_RS21515	0.18	+0.2
4,654,783	-		DZA65_RS21515	0.57	+0.5
4,654,783	-		DZA65_RS21515	0.57	-0.2
4,654,802	-		DZA65_RS21515	0.61	-0.4
4,654,802	-		DZA65_RS21515	0.61	-0.4
4,654,938	+		DZA65_RS21515	0.89	+0.2
4,654,938	+		DZA65_RS21515	0.89	-0.9
4,654,938	+		DZA65_RS21515	0.89	-0.4
4,654,938	+		DZA65_RS21515	0.89	+0.8
4,654,938	+		DZA65_RS21515	0.89	-0.0
4,654,939	-		DZA65_RS21515	0.89	+0.8
4,654,939	-		DZA65_RS21515	0.89	-0.2
4,654,939	-		DZA65_RS21515	0.89	+1.4
4,654,939	-		DZA65_RS21515	0.89	-0.2
4,654,939	-		DZA65_RS21515	0.89	+0.5
4,654,990	-				+0.4
4,655,059	-				+0.1
4,655,077	+				+1.0
4,655,078	-				+0.4
4,655,108	+		DZA65_RS21520	0.21	-0.3
4,655,126	+		DZA65_RS21520	0.28	-0.9
4,655,126	+		DZA65_RS21520	0.28	-1.2
4,655,126	+		DZA65_RS21520	0.28	+0.5
4,655,127	-		DZA65_RS21520	0.29	-1.2
4,655,170	+		DZA65_RS21520	0.47	-1.2
4,655,170	+		DZA65_RS21520	0.47	-0.2
4,655,170	+				-0.2
4,655,194	+		DZA65_RS21520	0.56	-0.0
4,655,194	+		DZA65_RS21520	0.56	-1.0
4,655,194	+		DZA65_RS21520	0.56	+0.3
4,655,194	+		DZA65_RS21520	0.56	+1.1
4,655,194	+		DZA65_RS21520	0.56	-0.3
4,655,194	+		DZA65_RS21520	0.56	+0.2
4,655,194	+		DZA65_RS21520	0.56	-0.0
4,655,194	+		DZA65_RS21520	0.56	-2.0
4,655,194	+		DZA65_RS21520	0.56	-0.2
4,655,194	+		DZA65_RS21520	0.56	+1.0
4,655,194	+		DZA65_RS21520	0.56	-1.3
4,655,194	+		DZA65_RS21520	0.56	+1.5
4,655,194	+		DZA65_RS21520	0.56	-1.6
4,655,194	+		DZA65_RS21520	0.56	+2.2
4,655,194	+		DZA65_RS21520	0.56	+0.5
4,655,194	+		DZA65_RS21520	0.56	+1.4
4,655,194	+		DZA65_RS21520	0.56	-0.8
4,655,194	+		DZA65_RS21520	0.56	-0.8
4,655,194	+		DZA65_RS21520	0.56	-0.1
4,655,194	+		DZA65_RS21520	0.56	+2.4
4,655,194	+		DZA65_RS21520	0.56	+0.5
4,655,194	+		DZA65_RS21520	0.56	+0.1
4,655,194	+		DZA65_RS21520	0.56	+1.3
4,655,194	+		DZA65_RS21520	0.56	+0.9
4,655,195	-		DZA65_RS21520	0.57	-0.8
4,655,195	-		DZA65_RS21520	0.57	-0.8
4,655,195	-		DZA65_RS21520	0.57	+2.2
4,655,195	-		DZA65_RS21520	0.57	+0.5
4,655,195	-		DZA65_RS21520	0.57	+0.3
4,655,195	-		DZA65_RS21520	0.57	+1.0
4,655,195	-		DZA65_RS21520	0.57	-0.1
4,655,195	-		DZA65_RS21520	0.57	+1.3
4,655,195	-		DZA65_RS21520	0.57	-0.4
4,655,195	-		DZA65_RS21520	0.57	+0.8
4,655,195	-		DZA65_RS21520	0.57	+0.1
4,655,195	-		DZA65_RS21520	0.57	+0.5
4,655,195	-		DZA65_RS21520	0.57	-0.4
4,655,195	-		DZA65_RS21520	0.57	-0.4
4,655,195	-		DZA65_RS21520	0.57	+0.2
4,655,195	-		DZA65_RS21520	0.57	+1.7
4,655,195	-		DZA65_RS21520	0.57	+1.6
4,655,195	-		DZA65_RS21520	0.57	+3.0
4,655,299	+				-0.4
4,655,299	+				+0.0
4,655,299	+				-0.2
4,655,299	+				-0.8
4,655,299	+				-0.6
4,655,300	-				-0.2
4,655,300	-				-0.8
4,655,317	+				-1.4
4,655,329	+				+0.7
4,655,330	-				-0.2