Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21240

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,586,837	+		DZA65_RS21230	0.83	-2.4
4,586,838	-		DZA65_RS21230	0.83	-0.6
4,586,882	+		DZA65_RS21230	0.87	-1.5
4,586,882	+		DZA65_RS21230	0.87	+0.4
4,586,882	+		DZA65_RS21230	0.87	+0.8
4,586,882	+		DZA65_RS21230	0.87	-1.2
4,586,882	+		DZA65_RS21230	0.87	+0.2
4,586,883	-		DZA65_RS21230	0.87	-2.0
4,586,883	-		DZA65_RS21230	0.87	+1.0
4,586,883	-		DZA65_RS21230	0.87	-2.2
4,586,883	-		DZA65_RS21230	0.87	-0.2
4,586,883	-		DZA65_RS21230	0.87	-0.2
4,586,901	+		DZA65_RS21230	0.89	+0.1
4,586,901	+		DZA65_RS21230	0.89	-0.2
4,586,902	-		DZA65_RS21230	0.89	-1.5
4,586,980	+				+1.2
4,586,980	+				-1.8
4,586,980	+				+0.7
4,586,980	+				-0.2
4,586,980	+				-0.4
4,586,980	+				+1.0
4,586,980	+				+0.4
4,586,980	+				+0.1
4,586,980	+				+0.8
4,586,980	+				+1.2
4,586,980	+				+0.4
4,586,980	+				+0.6
4,586,980	+				-0.3
4,586,981	-				+1.1
4,586,981	-				-0.5
4,586,981	-				+0.8
4,586,981	-				-1.2
4,586,981	-				-0.9
4,586,981	-				+0.3
4,586,981	-				-0.8
4,586,981	-				-0.2
4,586,981	-				-1.4
4,586,981	-				+0.8
4,586,982	+				-1.0
4,586,982	+				-0.2
4,586,982	+				+0.0
4,586,982	+				+1.3
4,586,982	+				-2.6
4,586,982	+				+0.8
4,586,982	+				+0.8
4,586,982	+				+0.7
4,586,982	+				+0.5
4,586,982	+				-1.2
4,586,982	+				+0.8
4,586,982	+				+0.1
4,586,983	-				-0.4
4,586,983	-				-0.2
4,586,983	-				-0.1
4,586,983	-				-0.2
4,586,983	-				-0.8
4,586,983	-				-0.8
4,586,983	-				+0.2
4,586,983	-				+0.5
4,586,983	-				+0.0
4,586,983	-				+0.4
4,586,983	-				+1.8
4,586,983	-				-2.3
4,586,983	-				+0.1
4,586,983	-				+0.6
4,586,983	-				+0.4
4,586,983	-				+0.2
4,586,983	-				-0.3
4,586,983	-				-0.3
4,586,983	-				-0.8
4,587,016	+				+0.6
4,587,017	-				-1.1
4,587,017	-				-0.3
4,587,071	-				+0.4
4,587,079	+				-1.6
4,587,115	+				-0.7
4,587,115	+				-2.2
4,587,116	-				-0.5
4,587,116	-				-0.7
4,587,116	-				+0.8
4,587,116	-				+0.7
4,587,123	+				-0.4
4,587,123	+				-2.4
4,587,124	-				-0.2
4,587,388	+		DZA65_RS21235	0.46	+0.6
4,587,388	+		DZA65_RS21235	0.46	-1.4
4,587,639	+		DZA65_RS21235	0.82	-0.2
4,587,639	+		DZA65_RS21235	0.82	-1.6
4,587,639	+		DZA65_RS21235	0.82	+1.3
4,587,640	-		DZA65_RS21235	0.82	+0.5
4,587,640	-		DZA65_RS21235	0.82	+1.0
4,587,640	-		DZA65_RS21235	0.82	-0.5
4,587,640	-		DZA65_RS21235	0.82	-0.8
4,587,640	-		DZA65_RS21235	0.82	+0.6
4,587,640	-		DZA65_RS21235	0.82	+0.0
4,587,640	-		DZA65_RS21235	0.82	-0.6
4,587,640	-		DZA65_RS21235	0.82	-0.8
4,587,640	-		DZA65_RS21235	0.82	+0.3
4,587,640	-		DZA65_RS21235	0.82	-0.6
4,587,640	-		DZA65_RS21235	0.82	-0.2
4,587,640	-		DZA65_RS21235	0.82	-1.5
4,587,646	+		DZA65_RS21235	0.83	-0.2
4,587,646	+		DZA65_RS21235	0.83	+1.6
4,587,647	-		DZA65_RS21235	0.83	-0.0
4,587,710	+				-0.4
4,587,710	+				-1.0
4,587,710	+				-0.3
4,587,711	-				+1.1
4,587,711	-				-0.1
4,587,711	-				-0.6
4,587,711	-				+0.5
4,587,767	+				-1.7
4,587,767	+				-0.8
4,587,767	+				-0.2
4,587,767	+				+1.2
4,587,767	+				-0.5
4,587,767	+				+0.8
4,587,767	+				-0.2
4,587,767	+				+0.5
4,587,767	+				+0.3
4,587,767	+				-1.8
4,587,767	+				-0.1
4,587,768	-				-0.6
4,587,768	-				+0.4
4,587,768	-				+1.6
4,587,768	-				+1.7
4,587,768	-				-0.6
4,587,768	-				-0.9
4,587,768	-				-2.2
4,587,768	-				+0.1
4,587,768	-				-0.6
4,587,768	-				-1.4
4,587,768	-				-1.4
4,587,768	-				-0.6
4,587,768	-				-0.9
4,587,768	-				-0.2
4,587,768	-				-0.8
4,587,768	-				-0.8
4,587,768	-				+1.0
4,587,768	-				-0.8
4,587,768	-				+0.1
4,587,768	-				+0.5
4,587,768	-				-0.1
4,587,988	+		DZA65_RS21240	0.14	-1.4
4,587,988	+		DZA65_RS21240	0.14	-0.4
4,587,989	-		DZA65_RS21240	0.14	-0.0
4,587,989	-		DZA65_RS21240	0.14	-1.3
4,587,989	-		DZA65_RS21240	0.14	-0.5
4,588,115	+		DZA65_RS21240	0.24	-0.3
4,588,115	+		DZA65_RS21240	0.24	-0.2
4,588,116	-		DZA65_RS21240	0.24	+1.6
4,588,116	-		DZA65_RS21240	0.24	-1.7
4,588,116	-		DZA65_RS21240	0.24	-0.8
4,588,132	+		DZA65_RS21240	0.25	+0.4
4,588,133	-		DZA65_RS21240	0.25	-1.5
4,588,163	-		DZA65_RS21240	0.27	-0.0
4,588,163	-		DZA65_RS21240	0.27	-3.0
4,588,258	+		DZA65_RS21240	0.35	+0.1
4,588,259	-		DZA65_RS21240	0.35	-1.5
4,588,311	-		DZA65_RS21240	0.39	+0.1
4,588,315	+		DZA65_RS21240	0.39	+0.6
4,588,316	-		DZA65_RS21240	0.40	-0.5
4,588,316	-		DZA65_RS21240	0.40	-1.0
4,588,316	-		DZA65_RS21240	0.40	-0.3
4,588,412	-		DZA65_RS21240	0.47	-0.5
4,588,415	+		DZA65_RS21240	0.47	-3.1
4,588,415	+		DZA65_RS21240	0.47	-1.4
4,588,416	-		DZA65_RS21240	0.47	-1.1
4,588,416	-		DZA65_RS21240	0.47	-1.1
4,588,416	-		DZA65_RS21240	0.47	+0.7
4,588,416	-		DZA65_RS21240	0.47	-0.0
4,588,416	-		DZA65_RS21240	0.47	+0.6
4,588,477	+		DZA65_RS21240	0.52	-0.8
4,588,477	+		DZA65_RS21240	0.52	-1.0
4,588,477	+		DZA65_RS21240	0.52	-0.2
4,588,477	+		DZA65_RS21240	0.52	-0.2
4,588,478	-		DZA65_RS21240	0.52	+0.5
4,588,478	-		DZA65_RS21240	0.52	-0.1
4,588,478	-		DZA65_RS21240	0.52	-1.1
4,588,478	-		DZA65_RS21240	0.52	+0.5
4,588,506	+		DZA65_RS21240	0.55	+1.6
4,588,507	-		DZA65_RS21240	0.55	-1.8
4,588,615	-		DZA65_RS21240	0.63	+0.2
4,588,615	-		DZA65_RS21240	0.63	+0.8
4,588,615	-		DZA65_RS21240	0.63	+0.2
4,588,674	-		DZA65_RS21240	0.68	+0.1
4,588,674	-		DZA65_RS21240	0.68	+0.6
4,588,674	-		DZA65_RS21240	0.68	-0.2
4,588,674	-		DZA65_RS21240	0.68	-1.5
4,588,674	-		DZA65_RS21240	0.68	+0.0
4,588,820	+		DZA65_RS21240	0.79	-1.0
4,588,821	-		DZA65_RS21240	0.79	-0.5
4,588,821	-		DZA65_RS21240	0.79	-1.4
4,588,840	+		DZA65_RS21240	0.81	-0.8
4,588,840	+		DZA65_RS21240	0.81	-1.0
4,588,841	-		DZA65_RS21240	0.81	-1.2
4,588,880	+		DZA65_RS21240	0.84	-0.9
4,588,880	+		DZA65_RS21240	0.84	-0.2
4,588,880	+		DZA65_RS21240	0.84	-0.8
4,588,880	+		DZA65_RS21240	0.84	+1.8
4,588,880	+		DZA65_RS21240	0.84	-2.4
4,588,881	-		DZA65_RS21240	0.84	+0.2
4,588,881	-		DZA65_RS21240	0.84	+1.1
4,588,881	-		DZA65_RS21240	0.84	-2.0
4,588,881	-		DZA65_RS21240	0.84	+0.7
4,588,884	+		DZA65_RS21240	0.84	-1.0
4,588,884	+		DZA65_RS21240	0.84	+1.0
4,588,884	+		DZA65_RS21240	0.84	-0.1
4,588,884	+		DZA65_RS21240	0.84	-0.3
4,588,884	+		DZA65_RS21240	0.84	+0.4
4,588,885	-		DZA65_RS21240	0.85	+0.3
4,588,885	-		DZA65_RS21240	0.85	-0.8
4,588,885	-		DZA65_RS21240	0.85	-0.6
4,588,936	+		DZA65_RS21240	0.89	-0.2
4,588,936	+		DZA65_RS21240	0.89	+1.2
4,588,937	-		DZA65_RS21240	0.89	-0.5
4,588,937	-		DZA65_RS21240	0.89	-0.8
4,588,937	-		DZA65_RS21240	0.89	-1.2
4,588,942	+		DZA65_RS21240	0.89	+0.8
4,588,942	+		DZA65_RS21240	0.89	+0.6
4,588,942	+		DZA65_RS21240	0.89	+1.1
4,588,943	-		DZA65_RS21240	0.89	+0.8
4,589,024	-				-0.6
4,589,043	+				+0.0
4,589,043	+				-0.2
4,589,043	+				+1.1
4,589,044	-				+1.4
4,589,071	+				-1.0
4,589,148	+				+0.2
4,589,156	+				+0.6
4,589,156	+				-2.9
4,589,156	+				+0.8
4,589,156	+				+1.4
4,589,156	+				+0.1
4,589,156	+				+1.6
4,589,156	+				-0.8
4,589,156	+				+0.8
4,589,156	+				+0.8
4,589,156	+				+0.8
4,589,157	-				-0.2
4,589,157	-				-1.6
4,589,157	-				-2.6
4,589,157	-				+0.4
4,589,157	-				+1.0
4,589,171	+				-2.0
4,589,171	+				-1.0
4,589,212	-		DZA65_RS21245	0.12	-0.3
4,589,375	+		DZA65_RS21245	0.26	-0.6
4,589,376	-		DZA65_RS21245	0.26	-1.4
4,589,376	-		DZA65_RS21245	0.26	+0.2
4,589,376	-		DZA65_RS21245	0.26	-1.1
4,589,376	-		DZA65_RS21245	0.26	+1.4
4,589,376	-		DZA65_RS21245	0.26	+0.0
4,589,376	-		DZA65_RS21245	0.26	+2.1
4,589,390	+		DZA65_RS21245	0.28	-0.2
4,589,390	+		DZA65_RS21245	0.28	+0.3
4,589,390	+		DZA65_RS21245	0.28	-1.2
4,589,390	+		DZA65_RS21245	0.28	-1.8
4,589,390	+		DZA65_RS21245	0.28	+0.2
4,589,390	+		DZA65_RS21245	0.28	+1.0
4,589,391	-		DZA65_RS21245	0.28	-1.5
4,589,391	-		DZA65_RS21245	0.28	+0.2
4,589,391	-		DZA65_RS21245	0.28	-0.8
4,589,391	-				+0.8
4,589,436	+		DZA65_RS21245	0.32	+0.5
4,589,436	+		DZA65_RS21245	0.32	+0.0
4,589,436	+		DZA65_RS21245	0.32	+0.7
4,589,436	+		DZA65_RS21245	0.32	-0.6
4,589,436	+		DZA65_RS21245	0.32	-0.6
4,589,437	-		DZA65_RS21245	0.32	-1.5
4,589,437	-		DZA65_RS21245	0.32	+1.2
4,589,437	-		DZA65_RS21245	0.32	+0.2
4,589,437	-		DZA65_RS21245	0.32	-2.4
4,589,455	+		DZA65_RS21245	0.33	-1.2
4,589,455	+		DZA65_RS21245	0.33	+0.6
4,589,455	+		DZA65_RS21245	0.33	-0.2
4,589,455	+		DZA65_RS21245	0.33	+0.6
4,589,456	-		DZA65_RS21245	0.34	-1.6
4,589,456	-		DZA65_RS21245	0.34	-1.5
4,589,456	-		DZA65_RS21245	0.34	+2.7
4,589,473	+		DZA65_RS21245	0.35	+0.8
4,589,615	+		DZA65_RS21245	0.48	-1.1
4,589,641	+		DZA65_RS21245	0.50	-0.4
4,589,642	-		DZA65_RS21245	0.50	+2.0
4,589,677	+		DZA65_RS21245	0.53	-0.8
4,589,677	+		DZA65_RS21245	0.53	-0.8
4,589,712	+		DZA65_RS21245	0.56	-0.3
4,589,713	-		DZA65_RS21245	0.56	-2.0
4,589,777	+		DZA65_RS21245	0.62	-2.2
4,589,778	-		DZA65_RS21245	0.62	-0.3
4,589,778	-		DZA65_RS21245	0.62	-0.8
4,589,778	-		DZA65_RS21245	0.62	+0.8
4,589,778	-		DZA65_RS21245	0.62	-0.9
4,589,778	-		DZA65_RS21245	0.62	+0.1
4,589,802	+		DZA65_RS21245	0.64	-0.2
4,589,802	+		DZA65_RS21245	0.64	+0.6
4,589,802	+		DZA65_RS21245	0.64	-0.6
4,589,802	+		DZA65_RS21245	0.64	-0.8
4,589,803	-		DZA65_RS21245	0.64	-2.6
4,589,803	-		DZA65_RS21245	0.64	+2.1
4,589,803	-		DZA65_RS21245	0.64	-1.2
4,589,803	-		DZA65_RS21245	0.64	-0.8
4,589,803	-		DZA65_RS21245	0.64	+0.1
4,589,803	-		DZA65_RS21245	0.64	-0.5
4,589,808	+		DZA65_RS21245	0.65	-0.0
4,589,838	+		DZA65_RS21245	0.67	-0.2
4,589,877	+		DZA65_RS21245	0.71	-0.2
4,589,878	-		DZA65_RS21245	0.71	+0.4
4,589,878	-		DZA65_RS21245	0.71	+0.8
4,589,885	+		DZA65_RS21245	0.71	-0.8
4,589,885	+		DZA65_RS21245	0.71	+0.7
4,589,885	+		DZA65_RS21245	0.71	+0.0
4,589,885	+		DZA65_RS21245	0.71	-0.4
4,589,885	+		DZA65_RS21245	0.71	-0.2
4,589,885	+		DZA65_RS21245	0.71	-0.4
4,589,885	+		DZA65_RS21245	0.71	+0.5
4,589,885	+		DZA65_RS21245	0.71	-0.4
4,589,886	-		DZA65_RS21245	0.72	+0.3
4,589,886	-		DZA65_RS21245	0.72	-1.5
4,589,886	-		DZA65_RS21245	0.72	+0.6
4,589,886	-		DZA65_RS21245	0.72	-0.0
4,589,886	-		DZA65_RS21245	0.72	-1.0
4,589,886	-		DZA65_RS21245	0.72	-0.8
4,589,886	-		DZA65_RS21245	0.72	-0.8
4,589,989	-		DZA65_RS21245	0.81	-1.6
4,590,027	+		DZA65_RS21245	0.84	-1.1
4,590,028	-		DZA65_RS21245	0.84	-2.0
4,590,041	+		DZA65_RS21245	0.85	+0.2
4,590,042	-		DZA65_RS21245	0.85	-0.9
4,590,052	+		DZA65_RS21245	0.86	-1.2
4,590,052	+		DZA65_RS21245	0.86	-0.5
4,590,052	+		DZA65_RS21245	0.86	+0.4
4,590,053	-		DZA65_RS21245	0.86	+0.0
4,590,070	+		DZA65_RS21245	0.88	-0.2
4,590,070	+		DZA65_RS21245	0.88	-0.6
4,590,071	-		DZA65_RS21245	0.88	+3.0
4,590,071	-		DZA65_RS21245	0.88	-0.8