Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20995

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,539,456	+		DZA65_RS20990	0.69	+0.6
4,539,456	+		DZA65_RS20990	0.69	-0.4
4,539,845	+				+0.8
4,539,845	+				-0.9
4,539,845	+				-0.5
4,539,847	+				-0.1
4,539,847	+				+0.6
4,539,847	+				-2.3
4,539,847	+				-2.2
4,539,847	+				-0.1
4,539,850	+				+2.4
4,539,885	+				+0.3
4,539,886	-				-0.2
4,539,901	+				+0.2
4,539,901	+				+0.1
4,539,901	+				+0.2
4,539,901	+				+2.0
4,539,902	-				+0.3
4,539,903	-				-0.1
4,539,940	+				-1.2
4,539,941	-				-0.6
4,539,941	-				-0.1
4,539,954	+				-0.2
4,539,954	+				+0.8
4,539,954	+				-0.3
4,539,954	+				+0.4
4,539,955	-				+0.1
4,539,955	-				+0.3
4,539,955	-				-2.4
4,539,955	-				-0.2
4,539,958	+				+0.8
4,539,958	+				+0.5
4,539,958	+				-0.6
4,539,959	-				+1.1
4,539,959	-				-0.3
4,539,959	-				-1.0
4,539,959	-				+0.2
4,539,977	+				-1.2
4,539,978	-				+0.9
4,539,978	-				-2.0
4,539,981	+				-0.4
4,539,981	+				-0.4
4,539,981	+				+0.7
4,539,981	+				-0.9
4,539,981	+				-0.1
4,539,981	+				-1.0
4,539,981	+				+0.8
4,539,981	+				-1.1
4,539,981	+				-1.3
4,539,981	+				-0.4
4,539,981	+				+1.3
4,539,981	+				-0.5
4,539,982	-				+1.4
4,539,982	-				+0.8
4,539,982	-				+1.1
4,539,982	-				+1.0
4,539,982	-				+0.8
4,539,982	-				+1.3
4,539,982	-				+2.3
4,539,982	-				+0.2
4,539,982	-				-1.2
4,539,982	-				-0.2
4,539,982	-				-1.4
4,539,982	-				-0.4
4,539,982	-				-0.9
4,539,982	-				+0.1
4,539,982	-				+0.8
4,539,982	-				-1.3
4,539,985	+				+0.8
4,539,985	+				+1.3
4,539,985	+				-0.8
4,539,985	+				+1.2
4,539,985	+				+0.2
4,539,985	+				+0.2
4,539,985	+				-1.4
4,539,985	+				-1.5
4,539,985	+				+0.1
4,539,985	+				+0.2
4,539,985	+				-0.9
4,539,985	+				-0.4
4,539,985	+				-0.3
4,539,985	+				-0.0
4,539,985	+				+1.2
4,539,985	+				+0.1
4,539,986	-				-1.8
4,539,986	-				+0.2
4,539,986	-				-0.8
4,539,986	-				-0.1
4,539,986	-				-0.2
4,539,986	-				-0.1
4,539,986	-				+0.2
4,539,986	-				-2.4
4,539,986	-				-0.1
4,539,986	-				+0.2
4,539,986	-				-0.6
4,539,986	-				-0.1
4,539,986	-				-1.2
4,539,986	-				+2.7
4,539,986	-				+0.1
4,539,986	-				-3.2
4,539,986	-				+0.5
4,539,986	-				+0.1
4,539,986	-				-0.8
4,539,987	+				-1.7
4,539,987	+				-0.9
4,539,987	+				+2.3
4,539,987	+				+0.8
4,539,987	+				-0.3
4,539,987	+				+0.6
4,539,987	+				-2.4
4,539,987	+				+0.1
4,539,987	+				-0.4
4,539,988	-				-1.5
4,539,988	-				+0.8
4,539,988	-				+1.3
4,539,988	-				-0.1
4,539,988	-				-0.5
4,539,988	-				-1.9
4,539,988	-				+0.6
4,539,988	-				-0.6
4,539,988	-				+0.5
4,539,988	-				-0.4
4,539,988	-				+0.1
4,539,988	-				-1.5
4,539,998	+				+1.6
4,540,008	+				-1.4
4,540,008	+				-2.5
4,540,008	+				-0.2
4,540,034	-				-0.5
4,540,034	-				-1.9
4,540,059	+				-0.3
4,540,060	-				+0.8
4,540,071	-				+0.8
4,540,202	+		DZA65_RS20995	0.20	+2.8
4,540,202	+		DZA65_RS20995	0.20	-0.1
4,540,203	-		DZA65_RS20995	0.20	-0.5
4,540,240	-		DZA65_RS20995	0.25	-0.8
4,540,420	-		DZA65_RS20995	0.51	+0.5
4,540,453	-		DZA65_RS20995	0.56	+2.1
4,540,563	+		DZA65_RS20995	0.71	+1.2
4,540,563	+		DZA65_RS20995	0.71	-0.3
4,540,563	+		DZA65_RS20995	0.71	-3.4
4,540,563	+		DZA65_RS20995	0.71	+0.0
4,540,563	+		DZA65_RS20995	0.71	+0.4
4,540,563	+		DZA65_RS20995	0.71	+0.1
4,540,563	+		DZA65_RS20995	0.71	+0.9
4,540,563	+		DZA65_RS20995	0.71	+0.8
4,540,563	+		DZA65_RS20995	0.71	-0.8
4,540,563	+		DZA65_RS20995	0.71	+0.9
4,540,563	+		DZA65_RS20995	0.71	-1.8
4,540,563	+		DZA65_RS20995	0.71	-2.2
4,540,563	+		DZA65_RS20995	0.71	-0.0
4,540,563	+		DZA65_RS20995	0.71	-0.1
4,540,563	+		DZA65_RS20995	0.71	-0.8
4,540,563	+		DZA65_RS20995	0.71	-2.2
4,540,563	+		DZA65_RS20995	0.71	-1.8
4,540,563	+		DZA65_RS20995	0.71	-1.5
4,540,564	-		DZA65_RS20995	0.72	+1.4
4,540,564	-		DZA65_RS20995	0.72	-1.5
4,540,564	-		DZA65_RS20995	0.72	+1.1
4,540,564	-		DZA65_RS20995	0.72	-0.1
4,540,564	-		DZA65_RS20995	0.72	+0.2
4,540,564	-		DZA65_RS20995	0.72	+1.5
4,540,564	-		DZA65_RS20995	0.72	+0.0
4,540,564	-		DZA65_RS20995	0.72	+0.2
4,540,564	-		DZA65_RS20995	0.72	+1.4
4,540,564	-		DZA65_RS20995	0.72	+2.3
4,540,564	-		DZA65_RS20995	0.72	-0.0
4,540,564	-		DZA65_RS20995	0.72	+2.5
4,540,564	-		DZA65_RS20995	0.72	-1.4
4,540,564	-		DZA65_RS20995	0.72	+0.6
4,540,564	-		DZA65_RS20995	0.72	+0.4
4,540,564	-		DZA65_RS20995	0.72	+0.2
4,540,564	-		DZA65_RS20995	0.72	+0.7
4,540,564	-		DZA65_RS20995	0.72	-0.2
4,540,564	-		DZA65_RS20995	0.72	+1.3
4,540,564	-		DZA65_RS20995	0.72	-0.7
4,540,674	+		DZA65_RS20995	0.87	+1.0
4,540,674	+		DZA65_RS20995	0.87	-1.1
4,540,674	+		DZA65_RS20995	0.87	+2.1
4,540,674	+		DZA65_RS20995	0.87	-0.9
4,540,675	-		DZA65_RS20995	0.87	+0.4
4,540,675	-		DZA65_RS20995	0.87	+1.8
4,540,675	-		DZA65_RS20995	0.87	-1.2
4,540,678	-		DZA65_RS20995	0.88	+0.8
4,540,696	+				-1.2
4,540,697	-				+0.7
4,540,723	+				-1.2
4,540,724	-				-0.8
4,540,724	-				+0.5
4,540,724	-				-1.2
4,540,751	+				-0.2
4,540,751	+				+0.8
4,540,752	-				-1.5
4,540,752	-				-1.2
4,540,755	+				+3.6
4,540,755	+				+0.1
4,540,755	+				+1.4
4,540,756	-				+0.4
4,540,756	-				-0.6
4,540,756	-				+0.4
4,540,793	+				-0.1
4,540,794	-				+0.1
4,540,811	-				-1.8
4,540,838	-				-2.2
4,541,052	+				-1.0
4,541,053	-				-0.2
4,541,056	+				-1.0
4,541,056	+				-0.2
4,541,056	+				-0.2
4,541,056	+				+2.7
4,541,056	+				+1.3
4,541,056	+				+0.1
4,541,056	+				-0.0
4,541,057	-				+0.8
4,541,057	-				+1.7
4,541,057	-				-0.7
4,541,057	-				-0.9
4,541,057	-				-0.2
4,541,057	-				+1.8
4,541,057	-				+2.9
4,541,057	-				-2.0
4,541,057	-				-1.8
4,541,057	-				+0.7
4,541,057	-				-1.5
4,541,057	-				+0.3
4,541,059	+				+0.1
4,541,059	+				+0.4
4,541,059	+				+0.1
4,541,129	+				+0.3
4,541,129	+				+0.4
4,541,129	+				+0.2
4,541,130	-				-0.2
4,541,179	+				+2.6
4,541,262	+				-0.0
4,541,262	+				-0.2
4,541,263	-				-1.0
4,541,307	+				+0.7
4,541,307	+				-0.9
4,541,311	+				+0.4
4,541,311	+				+1.0
4,541,311	+				+0.5
4,541,311	+				-1.8
4,541,312	-				-0.0
4,541,312	-				+1.1
4,541,315	-				-1.4
4,541,315	-				+0.2
4,541,385	+				+3.1
4,541,409	-				-1.8
4,541,413	+				+0.5
4,541,413	+				-0.1
4,541,413	+				+0.6
4,541,413	+				-0.5
4,541,413	+				+0.3
4,541,414	-				-0.5
4,541,414	-				-0.1
4,541,414	-				-0.4
4,541,520	-		DZA65_RS21005	0.11	-0.4
4,541,550	+		DZA65_RS21005	0.14	-0.1
4,541,550	+		DZA65_RS21005	0.14	-0.1
4,541,550	+		DZA65_RS21005	0.14	-0.0
4,541,551	-		DZA65_RS21005	0.14	+0.2
4,541,571	+		DZA65_RS21005	0.16	+1.0
4,541,571	+		DZA65_RS21005	0.16	-1.0
4,541,571	+		DZA65_RS21005	0.16	-0.5
4,541,572	-		DZA65_RS21005	0.16	+0.8
4,541,572	-		DZA65_RS21005	0.16	+0.4
4,541,572	-		DZA65_RS21005	0.16	-0.5
4,541,572	-		DZA65_RS21005	0.16	-0.0
4,541,572	-		DZA65_RS21005	0.16	-1.8
4,541,572	-		DZA65_RS21005	0.16	-1.0
4,541,572	-		DZA65_RS21005	0.16	+1.8
4,541,572	-		DZA65_RS21005	0.16	-0.5
4,541,650	+		DZA65_RS21005	0.22	-0.0
4,541,650	+		DZA65_RS21005	0.22	+0.2
4,541,651	-		DZA65_RS21005	0.22	-2.5
4,541,652	+		DZA65_RS21005	0.22	+0.6
4,541,652	+		DZA65_RS21005	0.22	+1.8
4,541,652	+		DZA65_RS21005	0.22	-2.0
4,541,652	+		DZA65_RS21005	0.22	-1.0
4,541,652	+		DZA65_RS21005	0.22	-2.8
4,541,652	+		DZA65_RS21005	0.22	-0.5
4,541,652	+		DZA65_RS21005	0.22	-1.7
4,541,653	-		DZA65_RS21005	0.22	+0.1
4,541,653	-		DZA65_RS21005	0.22	+0.3
4,541,653	-		DZA65_RS21005	0.22	-0.8
4,541,653	-		DZA65_RS21005	0.22	+0.8
4,541,653	-		DZA65_RS21005	0.22	-1.8
4,541,653	-		DZA65_RS21005	0.22	-0.9
4,541,653	-		DZA65_RS21005	0.22	+0.3
4,541,653	-		DZA65_RS21005	0.22	+0.1
4,541,653	-		DZA65_RS21005	0.22	+1.2
4,541,668	+		DZA65_RS21005	0.24	-0.9
4,541,668	+		DZA65_RS21005	0.24	-0.6
4,541,694	+		DZA65_RS21005	0.26	+1.4
4,541,694	+		DZA65_RS21005	0.26	+1.0
4,541,694	+		DZA65_RS21005	0.26	+0.5
4,541,694	+		DZA65_RS21005	0.26	-0.2
4,541,695	-		DZA65_RS21005	0.26	-1.2