Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20855

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,499,722	+		DZA65_RS20850	0.58	-0.1
4,499,722	+		DZA65_RS20850	0.58	+0.2
4,499,722	+		DZA65_RS20850	0.58	-0.8
4,499,722	+		DZA65_RS20850	0.58	+1.3
4,499,722	+		DZA65_RS20850	0.58	-0.1
4,499,722	+		DZA65_RS20850	0.58	-0.8
4,499,722	+		DZA65_RS20850	0.58	-0.0
4,499,722	+		DZA65_RS20850	0.58	-1.4
4,499,722	+		DZA65_RS20850	0.58	+1.8
4,499,722	+		DZA65_RS20850	0.58	-1.2
4,499,722	+		DZA65_RS20850	0.58	-0.8
4,499,722	+		DZA65_RS20850	0.58	+0.8
4,499,722	+		DZA65_RS20850	0.58	-0.8
4,499,722	+		DZA65_RS20850	0.58	-1.8
4,499,722	+		DZA65_RS20850	0.58	-0.7
4,499,723	-		DZA65_RS20850	0.58	+0.4
4,499,723	-		DZA65_RS20850	0.58	-0.8
4,499,723	-		DZA65_RS20850	0.58	+1.5
4,499,914	+		DZA65_RS20850	0.67	-1.0
4,499,915	-		DZA65_RS20850	0.67	-2.4
4,499,915	-		DZA65_RS20850	0.67	+1.2
4,499,915	-		DZA65_RS20850	0.67	-0.2
4,499,915	-		DZA65_RS20850	0.67	+0.0
4,499,932	+		DZA65_RS20850	0.68	-0.8
4,499,932	+		DZA65_RS20850	0.68	+0.1
4,499,932	+		DZA65_RS20850	0.68	+0.4
4,499,932	+		DZA65_RS20850	0.68	-1.1
4,499,932	+		DZA65_RS20850	0.68	+2.1
4,499,932	+		DZA65_RS20850	0.68	-0.4
4,499,932	+		DZA65_RS20850	0.68	-0.6
4,499,933	-		DZA65_RS20850	0.68	-0.0
4,499,933	-		DZA65_RS20850	0.68	+0.8
4,499,933	-		DZA65_RS20850	0.68	-0.8
4,499,933	-		DZA65_RS20850	0.68	-0.0
4,499,933	-		DZA65_RS20850	0.68	-1.7
4,499,933	-		DZA65_RS20850	0.68	+0.4
4,499,948	+		DZA65_RS20850	0.69	+0.7
4,499,948	+		DZA65_RS20850	0.69	-0.2
4,499,948	+		DZA65_RS20850	0.69	+0.8
4,499,949	-		DZA65_RS20850	0.69	+0.3
4,499,949	-				+3.4
4,499,949	-		DZA65_RS20850	0.69	-0.1
4,499,949	-		DZA65_RS20850	0.69	-0.4
4,499,949	-		DZA65_RS20850	0.69	-0.3
4,500,019	+		DZA65_RS20850	0.73	+1.5
4,500,019	+		DZA65_RS20850	0.73	+0.2
4,500,019	+		DZA65_RS20850	0.73	-0.3
4,500,020	-		DZA65_RS20850	0.73	-1.5
4,500,020	-		DZA65_RS20850	0.73	-0.0
4,500,020	-		DZA65_RS20850	0.73	+0.9
4,500,020	-		DZA65_RS20850	0.73	+0.8
4,500,020	-		DZA65_RS20850	0.73	+1.1
4,500,051	+		DZA65_RS20850	0.74	+1.4
4,500,051	+		DZA65_RS20850	0.74	-1.0
4,500,052	-		DZA65_RS20850	0.74	-2.0
4,500,052	-		DZA65_RS20850	0.74	+0.9
4,500,178	+		DZA65_RS20850	0.81	-1.2
4,500,178	+		DZA65_RS20850	0.81	+0.8
4,500,179	-		DZA65_RS20850	0.81	-0.9
4,500,179	-		DZA65_RS20850	0.81	+1.6
4,500,179	-		DZA65_RS20850	0.81	+0.1
4,500,179	-		DZA65_RS20850	0.81	+0.2
4,500,179	-		DZA65_RS20850	0.81	+0.4
4,500,179	-		DZA65_RS20850	0.81	+0.0
4,500,184	+		DZA65_RS20850	0.81	+0.8
4,500,184	+		DZA65_RS20850	0.81	-0.1
4,500,184	+		DZA65_RS20850	0.81	+1.5
4,500,184	+		DZA65_RS20850	0.81	-0.2
4,500,184	+		DZA65_RS20850	0.81	+0.3
4,500,184	+		DZA65_RS20850	0.81	+0.5
4,500,184	+		DZA65_RS20850	0.81	+0.2
4,500,184	+		DZA65_RS20850	0.81	-1.8
4,500,184	+		DZA65_RS20850	0.81	-3.0
4,500,184	+		DZA65_RS20850	0.81	-0.1
4,500,185	-		DZA65_RS20850	0.81	-2.0
4,500,185	-		DZA65_RS20850	0.81	+1.1
4,500,185	-		DZA65_RS20850	0.81	-1.9
4,500,185	-		DZA65_RS20850	0.81	-0.6
4,500,185	-		DZA65_RS20850	0.81	-1.4
4,500,249	+		DZA65_RS20850	0.84	-0.6
4,500,249	+		DZA65_RS20850	0.84	+1.4
4,500,249	+		DZA65_RS20850	0.84	-1.5
4,500,249	+		DZA65_RS20850	0.84	+0.3
4,500,249	+		DZA65_RS20850	0.84	+0.6
4,500,249	+		DZA65_RS20850	0.84	+0.2
4,500,250	-		DZA65_RS20850	0.84	-0.3
4,500,250	-		DZA65_RS20850	0.84	-2.5
4,500,250	-		DZA65_RS20850	0.84	+0.6
4,500,250	-		DZA65_RS20850	0.84	-1.3
4,500,250	-		DZA65_RS20850	0.84	-1.0
4,500,250	-		DZA65_RS20850	0.84	-1.8
4,500,271	+		DZA65_RS20850	0.85	-0.7
4,500,271	+		DZA65_RS20850	0.85	+0.1
4,500,271	+		DZA65_RS20850	0.85	+0.2
4,500,272	-		DZA65_RS20850	0.85	-0.9
4,500,272	-		DZA65_RS20850	0.85	-0.7
4,500,272	-		DZA65_RS20850	0.85	+1.2
4,500,272	-		DZA65_RS20850	0.85	+0.5
4,500,272	-		DZA65_RS20850	0.85	-0.2
4,500,277	+		DZA65_RS20850	0.86	+0.6
4,500,277	+		DZA65_RS20850	0.86	-2.0
4,500,277	+		DZA65_RS20850	0.86	+0.2
4,500,277	+		DZA65_RS20850	0.86	+0.5
4,500,278	-		DZA65_RS20850	0.86	+0.3
4,500,278	-		DZA65_RS20850	0.86	-1.5
4,500,301	+		DZA65_RS20850	0.87	-0.7
4,500,322	-		DZA65_RS20850	0.88	+0.3
4,500,322	-		DZA65_RS20850	0.88	-0.2
4,500,361	+		DZA65_RS20850	0.90	-1.0
4,500,361	+		DZA65_RS20850	0.90	+1.4
4,500,362	-		DZA65_RS20850	0.90	-2.0
4,500,362	-		DZA65_RS20850	0.90	-0.2
4,500,380	+				-0.6
4,500,380	+				-0.2
4,500,380	+				-1.5
4,500,381	-				-1.2
4,500,421	+				+1.4
4,500,422	-				+0.4
4,500,562	+				-1.3
4,500,562	+				-1.2
4,500,562	+				+0.6
4,500,562	+				-0.2
4,500,562	+				-1.7
4,500,562	+				-0.2
4,500,562	+				-2.0
4,500,562	+				+2.0
4,500,562	+				+0.6
4,500,562	+				+0.1
4,500,562	+				-0.0
4,500,563	-				+0.3
4,500,563	-				+1.0
4,500,563	-				+2.4
4,500,563	-				-0.0
4,500,617	-				+0.5
4,500,617	-				+1.2
4,500,632	+				-0.4
4,500,633	-				-1.2
4,500,664	+				+0.8
4,500,664	+				+1.9
4,500,664	+				+0.4
4,500,664	+				-0.2
4,500,664	+				-2.0
4,500,664	+				+0.4
4,500,665	-				-0.4
4,500,665	-				-0.2
4,500,665	-				-1.4
4,500,665	-				-0.3
4,500,665	-				+1.0
4,500,665	-				+0.8
4,500,665	-				+0.7
4,500,665	-				-0.4
4,500,665	-				-0.8
4,500,686	+				-0.4
4,500,704	+				-1.2
4,500,718	+				+0.5
4,500,718	+				+0.8
4,500,718	+				-2.5
4,500,718	+				+0.3
4,500,718	+				-1.0
4,500,718	+				+0.5
4,500,718	+				-1.2
4,500,718	+				+0.1
4,500,718	+				+1.8
4,500,718	+				-0.9
4,500,718	+				+1.4
4,500,718	+				-0.2
4,500,718	+				+0.1
4,500,718	+				+1.0
4,500,719	-				-0.1
4,500,719	-				+0.4
4,500,719	-				-1.2
4,500,719	-				-1.4
4,500,719	-				+0.5
4,500,719	-				-0.2
4,500,719	-				+0.2
4,500,719	-				-0.2
4,500,719	-				-1.0
4,500,719	-				-0.1
4,500,719	-				-1.5
4,500,719	-				-0.5
4,500,719	-				+0.5
4,500,719	-				-1.4
4,500,719	-				-0.2
4,500,719	-				+1.5
4,500,719	-				+0.0
4,500,719	-				-0.4
4,500,748	+				-0.5
4,500,748	+				+1.3
4,500,748	+				+0.1
4,500,748	+				+0.5
4,500,748	+				+0.0
4,500,748	+				+0.2
4,500,749	-				-0.0
4,500,749	-				-0.2
4,500,749	-				+0.9
4,500,749	-				-1.4
4,500,749	-				+0.8
4,500,749	-				-0.8
4,500,749	-				-0.2
4,500,749	-				-0.2
4,500,819	+				+0.2
4,500,819	+				+0.2
4,500,819	+				-0.0
4,500,819	+				-0.2
4,500,895	+		DZA65_RS20855	0.10	+1.0
4,500,895	+		DZA65_RS20855	0.10	+2.0
4,500,895	+		DZA65_RS20855	0.10	-0.5
4,500,895	+		DZA65_RS20855	0.10	+0.0
4,500,895	+		DZA65_RS20855	0.10	+0.2
4,500,895	+		DZA65_RS20855	0.10	-0.3
4,500,895	+		DZA65_RS20855	0.10	+0.5
4,500,895	+		DZA65_RS20855	0.10	+1.2
4,500,895	+		DZA65_RS20855	0.10	+1.0
4,500,895	+		DZA65_RS20855	0.10	-0.7
4,500,896	-		DZA65_RS20855	0.10	+0.3
4,501,058	+		DZA65_RS20855	0.20	-0.2
4,501,058	+		DZA65_RS20855	0.20	-0.5
4,501,058	+		DZA65_RS20855	0.20	-0.1
4,501,058	+		DZA65_RS20855	0.20	-0.4
4,501,058	+		DZA65_RS20855	0.20	+0.4
4,501,058	+		DZA65_RS20855	0.20	+0.2
4,501,059	-		DZA65_RS20855	0.20	-1.0
4,501,059	-		DZA65_RS20855	0.20	-1.2
4,501,059	-		DZA65_RS20855	0.20	+2.4
4,501,059	-		DZA65_RS20855	0.20	+0.4
4,501,060	+		DZA65_RS20855	0.20	+0.9
4,501,060	+		DZA65_RS20855	0.20	+1.4
4,501,060	+		DZA65_RS20855	0.20	+2.7
4,501,060	+		DZA65_RS20855	0.20	-0.2
4,501,060	+		DZA65_RS20855	0.20	-0.5
4,501,061	-		DZA65_RS20855	0.20	+0.7
4,501,061	-		DZA65_RS20855	0.20	+1.4
4,501,061	-		DZA65_RS20855	0.20	+0.0
4,501,061	-		DZA65_RS20855	0.20	+0.0
4,501,061	-		DZA65_RS20855	0.20	+1.3
4,501,061	-		DZA65_RS20855	0.20	+1.4
4,501,061	-		DZA65_RS20855	0.20	+0.5
4,501,061	-		DZA65_RS20855	0.20	-0.8
4,501,061	-		DZA65_RS20855	0.20	-0.4
4,501,243	+		DZA65_RS20855	0.31	-0.6
4,501,244	-		DZA65_RS20855	0.31	+0.0
4,501,301	-		DZA65_RS20855	0.34	+0.3
4,501,301	-		DZA65_RS20855	0.34	+1.4
4,501,301	-		DZA65_RS20855	0.34	+0.0
4,501,301	-		DZA65_RS20855	0.34	-0.3
4,501,301	-		DZA65_RS20855	0.34	+0.5
4,501,316	+		DZA65_RS20855	0.35	-0.5
4,501,316	+		DZA65_RS20855	0.35	-1.2
4,501,316	+		DZA65_RS20855	0.35	-0.0
4,501,316	+		DZA65_RS20855	0.35	-1.8
4,501,316	+		DZA65_RS20855	0.35	-0.1
4,501,317	-		DZA65_RS20855	0.35	+1.2
4,501,317	-		DZA65_RS20855	0.35	+1.1
4,501,317	-		DZA65_RS20855	0.35	+0.7
4,501,317	-		DZA65_RS20855	0.35	+0.1
4,501,317	-		DZA65_RS20855	0.35	+0.5
4,501,317	-		DZA65_RS20855	0.35	+0.8
4,501,317	-		DZA65_RS20855	0.35	+0.5
4,501,334	+		DZA65_RS20855	0.36	+1.4
4,501,334	+				+1.8
4,501,335	-		DZA65_RS20855	0.36	+0.9
4,501,335	-		DZA65_RS20855	0.36	-0.5
4,501,335	-		DZA65_RS20855	0.36	-2.5
4,501,335	-		DZA65_RS20855	0.36	+0.2
4,501,335	-		DZA65_RS20855	0.36	+1.3
4,501,335	-		DZA65_RS20855	0.36	-0.2
4,501,335	-		DZA65_RS20855	0.36	-0.6
4,501,539	+		DZA65_RS20855	0.48	+1.8
4,501,568	-		DZA65_RS20855	0.50	+2.4
4,501,626	-		DZA65_RS20855	0.53	+1.8
4,501,631	+		DZA65_RS20855	0.53	-2.2
4,501,632	-		DZA65_RS20855	0.53	+0.0
4,501,652	+		DZA65_RS20855	0.55	-0.8
4,501,652	+		DZA65_RS20855	0.55	-0.2
4,501,652	+		DZA65_RS20855	0.55	-0.1
4,501,652	+		DZA65_RS20855	0.55	-2.9
4,501,652	+		DZA65_RS20855	0.55	+0.8
4,501,652	+		DZA65_RS20855	0.55	-0.2
4,501,652	+		DZA65_RS20855	0.55	-0.5
4,501,652	+		DZA65_RS20855	0.55	+0.6
4,501,652	+		DZA65_RS20855	0.55	-0.4
4,501,653	-		DZA65_RS20855	0.55	+0.9
4,501,653	-		DZA65_RS20855	0.55	-1.4
4,501,653	-		DZA65_RS20855	0.55	+0.4
4,501,653	-		DZA65_RS20855	0.55	+1.0
4,501,653	-		DZA65_RS20855	0.55	+0.1
4,501,653	-		DZA65_RS20855	0.55	+0.5
4,501,653	-		DZA65_RS20855	0.55	-0.4
4,501,653	-		DZA65_RS20855	0.55	-1.4
4,501,653	-		DZA65_RS20855	0.55	+0.7
4,501,653	-		DZA65_RS20855	0.55	+0.2
4,501,660	+		DZA65_RS20855	0.55	-1.1
4,501,660	+		DZA65_RS20855	0.55	+2.7
4,501,661	-		DZA65_RS20855	0.55	-1.8
4,501,661	-		DZA65_RS20855	0.55	-1.2
4,501,758	-		DZA65_RS20855	0.61	+0.6
4,501,758	-		DZA65_RS20855	0.61	+0.5
4,501,855	+		DZA65_RS20855	0.66	-0.5
4,501,862	+		DZA65_RS20855	0.67	-1.0
4,501,863	-		DZA65_RS20855	0.67	-1.4
4,501,863	-		DZA65_RS20855	0.67	-1.0
4,501,863	-		DZA65_RS20855	0.67	-0.1
4,501,870	+		DZA65_RS20855	0.67	-1.1
4,501,870	+		DZA65_RS20855	0.67	-3.2
4,501,871	-		DZA65_RS20855	0.67	-0.5
4,501,871	-		DZA65_RS20855	0.67	+2.4
4,501,871	-		DZA65_RS20855	0.67	+0.6
4,501,871	-		DZA65_RS20855	0.67	-0.8
4,501,939	+		DZA65_RS20855	0.71	-0.1
4,501,940	-		DZA65_RS20855	0.71	-1.5
4,501,940	-		DZA65_RS20855	0.71	+0.5
4,501,952	+		DZA65_RS20855	0.72	+1.2
4,501,952	+		DZA65_RS20855	0.72	-1.5
4,501,953	-		DZA65_RS20855	0.72	-1.1
4,501,953	-		DZA65_RS20855	0.72	-0.8
4,501,976	+		DZA65_RS20855	0.74	+0.9
4,501,977	-		DZA65_RS20855	0.74	+0.1
4,501,977	-		DZA65_RS20855	0.74	-1.2
4,501,977	-		DZA65_RS20855	0.74	-0.5
4,501,977	-		DZA65_RS20855	0.74	-0.3
4,502,001	-		DZA65_RS20855	0.75	-2.8
4,502,027	+		DZA65_RS20855	0.76	-1.0
4,502,027	+		DZA65_RS20855	0.76	+0.3
4,502,028	-		DZA65_RS20855	0.77	-0.2
4,502,096	+		DZA65_RS20855	0.81	+0.3
4,502,097	-		DZA65_RS20855	0.81	-0.3
4,502,195	+		DZA65_RS20855	0.86	-2.0
4,502,196	-		DZA65_RS20855	0.86	-0.5
4,502,196	-		DZA65_RS20855	0.86	-0.5
4,502,196	-		DZA65_RS20855	0.86	-1.9
4,502,237	-		DZA65_RS20855	0.89	-0.2
4,502,237	-		DZA65_RS20855	0.89	+0.8
4,502,254	+		DZA65_RS20855	0.90	+0.8
4,502,254	+		DZA65_RS20855	0.90	+0.2
4,502,254	+		DZA65_RS20855	0.90	-0.9
4,502,255	-		DZA65_RS20855	0.90	-2.0
4,502,261	+				+0.0
4,502,261	+				-1.3
4,502,261	+				-1.5
4,502,261	+				+0.8
4,502,261	+				-1.5
4,502,261	+				+0.2
4,502,262	-				-0.4
4,502,262	-				-0.4
4,502,262	-				+0.7
4,502,270	+				-0.4
4,502,270	+				-1.7
4,502,299	-				+0.6
4,502,367	+				+0.0
4,502,367	+				+1.5
4,502,367	+				-0.1
4,502,368	-				-1.2
4,502,368	-				+1.5
4,502,390	+				+0.6
4,502,399	+				+0.8
4,502,399	+				+0.3
4,502,399	+				+0.1
4,502,399	+				+0.2
4,502,399	+				-0.5
4,502,399	+				-0.7
4,502,400	-				+0.3
4,502,400	-				+0.3
4,502,400	-				-0.8
4,502,400	-				-0.4
4,502,400	-				+2.2
4,502,402	-				+1.2
4,502,492	-				-1.6
4,502,507	-				-1.0
4,502,508	+				-2.3
4,502,508	+				+0.3
4,502,508	+				+0.1
4,502,508	+				+0.3
4,502,508	+				-0.8
4,502,509	-				+0.5
4,502,509	-				-1.5
4,502,509	-				-0.0
4,502,509	-				+0.6
4,502,509	-				-0.4
4,502,509	-				+0.0
4,502,509	-				+1.3
4,502,509	-				+0.4
4,502,527	+				-0.6
4,502,527	+				-2.5
4,502,545	+				-0.2
4,502,545	+				+0.1
4,502,553	+				-0.8
4,502,556	+				-1.2
4,502,556	+				-0.9
4,502,556	+				-0.8
4,502,556	+				-1.2
4,502,556	+				+0.8
4,502,557	-				-1.1
4,502,562	+				+0.1
4,502,562	+				+1.5
4,502,563	-				-0.4
4,502,563	-				-0.8
4,502,573	+				-1.7
4,502,574	-				-0.2
4,502,579	+				+0.7
4,502,579	+				-0.1
4,502,580	-				-0.8
4,502,594	-				-0.4
4,502,594	-				-0.2
4,502,700	-				-1.8
4,502,735	-				-0.2
4,502,735	-				-0.4
4,502,735	-				-0.4
4,502,735	-				-0.7
4,502,761	-				-0.5
4,502,887	-		DZA65_RS20860	0.13	+1.5
4,502,887	-		DZA65_RS20860	0.13	+1.0
4,502,895	+		DZA65_RS20860	0.13	-1.8
4,502,896	-		DZA65_RS20860	0.14	-0.4
4,502,896	-		DZA65_RS20860	0.14	+0.8
4,502,896	-		DZA65_RS20860	0.14	-0.2
4,503,068	+		DZA65_RS20860	0.21	-1.4
4,503,068	+		DZA65_RS20860	0.21	+0.4
4,503,123	+		DZA65_RS20860	0.23	-0.8
4,503,123	+		DZA65_RS20860	0.23	-0.6
4,503,123	+		DZA65_RS20860	0.23	-2.2
4,503,124	-		DZA65_RS20860	0.23	+0.2