Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19110

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS19105 and DZA65_RS19110 overlap by 4 nucleotidesDZA65_RS19110 and DZA65_RS19115 are separated by 164 nucleotides DZA65_RS19105: DZA65_RS19105 - cell division protein FtsA, at 4,129,366 to 4,130,622 _RS19105 DZA65_RS19110: DZA65_RS19110 - cell division protein FtsQ, at 4,130,619 to 4,131,473 _RS19110 DZA65_RS19115: DZA65_RS19115 - UDP-N-acetylmuramate--L-alanine ligase, at 4,131,638 to 4,133,098 _RS19115 Position (kb) 4130 4131 4132Strain fitness (log2 ratio) -2 -1 0 1 2at 4130.658 kb on - strandat 4130.697 kb on - strandat 4131.474 kb on - strandat 4131.474 kb on - strandat 4131.477 kb on - strandat 4131.477 kb on - strandat 4131.477 kb on - strandat 4131.477 kb on - strandat 4131.500 kb on - strandat 4131.500 kb on - strandat 4131.500 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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4,130,658 - -1.1
4,130,697 - +0.4
4,131,474 - -1.5
4,131,474 - +0.7
4,131,477 - -1.7
4,131,477 - -2.3
4,131,477 - +2.2
4,131,477 - -0.9
4,131,500 - +0.5
4,131,500 - -0.1
4,131,500 - -0.2

Or see this region's nucleotide sequence