Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18810

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,052,838	+		DZA65_RS18795	0.85	-0.4
4,052,959	+				+2.6
4,052,959	+				-0.6
4,052,959	+				-0.0
4,052,959	+				-0.3
4,052,960	-				-1.4
4,053,104	+				-0.5
4,053,104	+				-2.0
4,053,104	+				+0.3
4,053,104	+				+0.1
4,053,104	+				+1.4
4,053,104	+				-0.6
4,053,104	+				+1.1
4,053,104	+				+0.0
4,053,105	-				+0.3
4,053,105	-				-0.2
4,053,105	-				-2.0
4,053,105	-				-2.0
4,053,105	-				+0.0
4,053,105	-				-1.4
4,053,105	-				+1.0
4,053,105	-				-0.6
4,053,105	-				-0.3
4,053,105	-				+2.0
4,053,105	-				-1.7
4,053,107	+				+0.1
4,053,108	-				-0.4
4,053,108	-				+0.5
4,053,108	-				+0.2
4,053,116	-				-0.7
4,053,130	+				-0.5
4,053,130	+				-1.4
4,053,130	+				-0.5
4,053,130	+				+0.3
4,053,130	+				-0.1
4,053,130	+				-0.2
4,053,130	+				+0.6
4,053,131	-				-0.1
4,053,131	-				-0.5
4,053,131	-				+0.8
4,053,131	-				+0.6
4,053,131	-				-1.2
4,053,131	-				+1.3
4,053,131	-				-0.6
4,053,131	-				-1.6
4,053,151	+				+0.6
4,053,151	+				+1.5
4,053,151	+				-0.4
4,053,151	+				-0.2
4,053,151	+				+0.6
4,053,151	+				+0.1
4,053,152	-				-0.7
4,053,152	-				+0.1
4,053,152	-				-0.1
4,053,152	-				-0.7
4,053,152	-				+0.6
4,053,152	-				+0.6
4,053,152	-				-1.4
4,053,152	-				-1.0
4,053,152	-				-2.8
4,053,310	+				+1.6
4,053,391	+				+0.6
4,053,391	+				+2.2
4,053,398	+				+0.4
4,053,430	+				+0.0
4,053,430	+				-0.6
4,053,430	+				+1.8
4,053,430	+				-1.0
4,053,430	+				+1.2
4,053,430	+				-0.2
4,053,430	+				-0.5
4,053,430	+				-2.5
4,053,430	+				-1.0
4,053,430	+				+1.3
4,053,430	+				+1.2
4,053,430	+				-0.7
4,053,430	+				-0.7
4,053,430	+				-0.3
4,053,430	+				+0.1
4,053,430	+				+1.6
4,053,430	+				+0.9
4,053,430	+				-1.2
4,053,430	+				+0.2
4,053,430	+				+2.5
4,053,430	+				-0.5
4,053,430	+				-1.5
4,053,430	+				-0.0
4,053,430	+				+1.3
4,053,430	+				-1.5
4,053,430	+				-0.5
4,053,430	+				+2.6
4,053,430	+				+0.4
4,053,430	+				-1.0
4,053,430	+				-0.1
4,053,430	+				-0.8
4,053,430	+				-0.6
4,053,430	+				-0.8
4,053,430	+				-0.0
4,053,430	+				+0.3
4,053,430	+				+0.2
4,053,430	+				+1.0
4,053,430	+				+0.4
4,053,430	+				+1.6
4,053,431	-				-0.1
4,053,431	-				-0.5
4,053,431	-				-1.4
4,053,431	-				-0.0
4,053,431	-				+0.0
4,053,431	-				-0.4
4,053,431	-				-1.3
4,053,431	-				+0.2
4,053,431	-				+1.6
4,053,431	-				-1.0
4,053,431	-				-0.2
4,053,431	-				-0.2
4,053,431	-				+0.8
4,053,431	-				+2.2
4,053,431	-				+0.4
4,053,431	-				+0.6
4,053,431	-				-2.0
4,053,431	-				-0.4
4,053,431	-				-1.3
4,053,431	-				+0.2
4,053,431	-				+0.4
4,053,431	-				+1.1
4,053,431	-				-2.4
4,053,431	-				+1.0
4,053,431	-				+2.1
4,053,431	-				+1.0
4,053,431	-				-0.6
4,053,431	-				-0.1
4,053,431	-				-0.2
4,053,431	-				+0.1
4,053,431	-				-1.4
4,053,431	-				-0.5
4,053,431	-				-0.2
4,053,431	-				+0.3
4,053,431	-				-2.2
4,053,431	-				+0.4
4,053,431	-				+0.5
4,053,436	+				+0.0
4,053,436	+				-0.2
4,053,436	+				-3.1
4,053,436	+				-0.8
4,053,436	+				+1.2
4,053,436	+				-1.0
4,053,436	+				+0.6
4,053,436	+				+1.0
4,053,436	+				+2.1
4,053,436	+				-1.0
4,053,437	-				-1.2
4,053,437	-				-0.6
4,053,437	-				+0.6
4,053,437	-				+0.6
4,053,437	-				+0.7
4,053,437	-				-0.2
4,053,437	-				+0.0
4,053,437	-				+0.4
4,053,437	-				-0.6
4,053,437	-				-0.3
4,053,437	-				+1.2
4,053,437	-				-1.2
4,053,437	-				-0.1
4,053,437	-				-1.5
4,053,437	-				+1.2
4,053,437	-				+1.4
4,053,437	-				+1.8
4,053,438	+				-0.4
4,053,475	+				-1.5
4,053,492	+				+1.1
4,053,492	+				+0.6
4,053,492	+				+1.1
4,053,492	+				+2.8
4,053,492	+				-0.2
4,053,492	+				-1.2
4,053,492	+				-0.0
4,053,493	-				-1.2
4,053,493	-				+0.9
4,053,493	-				-1.0
4,053,493	-				-1.4
4,053,493	-				-0.7
4,053,496	+				+0.0
4,053,496	+				+1.0
4,053,496	+				-0.3
4,053,496	+				-0.3
4,053,497	-				+0.5
4,053,497	-				+0.1
4,053,497	-				+1.9
4,053,525	+				-2.3
4,053,525	+				-2.0
4,053,526	-				-2.0
4,053,526	-				-0.4
4,053,526	-				-0.6
4,053,526	-				-1.4
4,053,526	-				-0.0
4,053,786	+				+1.3
4,053,786	+				+0.6
4,053,787	-				+0.0
4,053,787	-				-0.4
4,053,795	-				-0.4
4,053,795	-				+1.6
4,053,804	-				+1.1
4,053,810	-				+0.6
4,053,810	-				-0.3
4,053,960	+		DZA65_RS18810	0.39	-0.8
4,053,960	+		DZA65_RS18810	0.39	+1.0
4,053,961	-		DZA65_RS18810	0.39	-3.1
4,053,961	-		DZA65_RS18810	0.39	-0.6
4,053,962	-		DZA65_RS18810	0.39	-0.6
4,053,971	+		DZA65_RS18810	0.41	-1.0
4,053,972	-		DZA65_RS18810	0.41	-1.7
4,054,135	-		DZA65_RS18810	0.80	+0.1
4,054,135	-		DZA65_RS18810	0.80	-1.2
4,054,135	-		DZA65_RS18810	0.80	+0.3
4,054,135	-		DZA65_RS18810	0.80	-0.8
4,054,182	+				-0.1
4,054,182	+				-0.9
4,054,182	+				+1.7
4,054,183	-				-0.6
4,054,183	-				+0.0
4,054,183	-				-0.1
4,054,183	-				+1.0
4,054,183	-				-0.0
4,054,292	+				+0.3
4,054,305	-				-0.4
4,054,613	+				+0.2
4,054,626	+				-0.9
4,054,641	+				+0.8
4,054,642	-				+1.0
4,054,674	-				+0.6
4,054,726	+		DZA65_RS18815	0.11	-1.5
4,054,759	-		DZA65_RS18815	0.11	-0.4
4,054,759	-		DZA65_RS18815	0.11	+0.1
4,054,759	-		DZA65_RS18815	0.11	-0.7
4,054,759	-		DZA65_RS18815	0.11	+0.2
4,054,759	-		DZA65_RS18815	0.11	-0.0
4,054,854	+		DZA65_RS18815	0.14	-0.2
4,054,939	+		DZA65_RS18815	0.16	+0.4
4,054,939	+		DZA65_RS18815	0.16	-0.7
4,054,939	+		DZA65_RS18815	0.16	+1.0
4,054,939	+		DZA65_RS18815	0.16	-0.1
4,054,939	+		DZA65_RS18815	0.16	+0.6
4,054,939	+		DZA65_RS18815	0.16	-0.3
4,054,940	-		DZA65_RS18815	0.16	+0.3
4,054,940	-		DZA65_RS18815	0.16	-0.7
4,054,940	-		DZA65_RS18815	0.16	+1.2
4,054,940	-		DZA65_RS18815	0.16	+2.0
4,054,940	-		DZA65_RS18815	0.16	-0.2
4,054,940	-		DZA65_RS18815	0.16	+0.3
4,054,940	-		DZA65_RS18815	0.16	+0.0
4,055,052	+		DZA65_RS18815	0.19	-0.4
4,055,052	+		DZA65_RS18815	0.19	+0.3
4,055,053	-		DZA65_RS18815	0.19	-1.7
4,055,065	+		DZA65_RS18815	0.19	-0.5
4,055,066	-		DZA65_RS18815	0.19	+0.6
4,055,066	-		DZA65_RS18815	0.19	+0.6
4,055,071	+		DZA65_RS18815	0.19	-1.1
4,055,071	+		DZA65_RS18815	0.19	+0.0
4,055,071	+		DZA65_RS18815	0.19	+1.5
4,055,071	+		DZA65_RS18815	0.19	-1.0
4,055,071	+		DZA65_RS18815	0.19	-0.7
4,055,071	+		DZA65_RS18815	0.19	-0.4
4,055,071	+		DZA65_RS18815	0.19	-1.2
4,055,071	+		DZA65_RS18815	0.19	+1.2
4,055,071	+		DZA65_RS18815	0.19	-0.8
4,055,071	+		DZA65_RS18815	0.19	+1.0
4,055,072	-		DZA65_RS18815	0.19	-0.7
4,055,072	-		DZA65_RS18815	0.19	-0.7
4,055,072	-		DZA65_RS18815	0.19	-1.2
4,055,072	-		DZA65_RS18815	0.19	-0.7
4,055,072	-		DZA65_RS18815	0.19	+1.1
4,055,072	-		DZA65_RS18815	0.19	+0.0
4,055,127	+		DZA65_RS18815	0.20	+0.5
4,055,128	-		DZA65_RS18815	0.20	-0.7
4,055,128	-		DZA65_RS18815	0.20	-1.7
4,055,128	-		DZA65_RS18815	0.20	+0.0
4,055,130	+		DZA65_RS18815	0.20	-0.0
4,055,131	-		DZA65_RS18815	0.20	-0.4