Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18670

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,021,117	+		DZA65_RS18665	0.63	+0.0
4,021,118	-		DZA65_RS18665	0.63	-0.2
4,021,189	+		DZA65_RS18665	0.68	+0.5
4,021,190	-		DZA65_RS18665	0.68	+1.6
4,021,190	-		DZA65_RS18665	0.68	+0.4
4,021,190	-		DZA65_RS18665	0.68	-1.8
4,021,196	+		DZA65_RS18665	0.68	-0.1
4,021,197	-		DZA65_RS18665	0.69	-0.8
4,021,197	-		DZA65_RS18665	0.69	+2.0
4,021,221	-		DZA65_RS18665	0.70	+1.2
4,021,285	+		DZA65_RS18665	0.75	+0.3
4,021,285	+		DZA65_RS18665	0.75	+0.9
4,021,285	+		DZA65_RS18665	0.75	-2.0
4,021,285	+		DZA65_RS18665	0.75	-1.0
4,021,285	+		DZA65_RS18665	0.75	+2.6
4,021,285	+		DZA65_RS18665	0.75	-1.2
4,021,285	+		DZA65_RS18665	0.75	-0.1
4,021,285	+		DZA65_RS18665	0.75	+1.0
4,021,285	+		DZA65_RS18665	0.75	+1.2
4,021,285	+		DZA65_RS18665	0.75	+1.1
4,021,285	+		DZA65_RS18665	0.75	-0.9
4,021,285	+		DZA65_RS18665	0.75	+1.0
4,021,285	+		DZA65_RS18665	0.75	+0.6
4,021,286	-		DZA65_RS18665	0.75	-0.1
4,021,286	-		DZA65_RS18665	0.75	-1.0
4,021,286	-		DZA65_RS18665	0.75	-1.4
4,021,286	-		DZA65_RS18665	0.75	+1.5
4,021,286	-		DZA65_RS18665	0.75	+0.5
4,021,286	-		DZA65_RS18665	0.75	+0.2
4,021,286	-		DZA65_RS18665	0.75	-0.1
4,021,286	-		DZA65_RS18665	0.75	+0.4
4,021,286	-		DZA65_RS18665	0.75	+0.5
4,021,286	-		DZA65_RS18665	0.75	-1.4
4,021,286	-		DZA65_RS18665	0.75	+2.8
4,021,286	-		DZA65_RS18665	0.75	-1.3
4,021,286	-		DZA65_RS18665	0.75	-2.4
4,021,286	-		DZA65_RS18665	0.75	-1.0
4,021,286	-		DZA65_RS18665	0.75	-0.4
4,021,286	-		DZA65_RS18665	0.75	-0.6
4,021,286	-		DZA65_RS18665	0.75	+0.1
4,021,327	+		DZA65_RS18665	0.78	-2.2
4,021,327	+		DZA65_RS18665	0.78	-0.4
4,021,327	+		DZA65_RS18665	0.78	+0.6
4,021,327	+		DZA65_RS18665	0.78	+1.3
4,021,327	+		DZA65_RS18665	0.78	-0.1
4,021,327	+		DZA65_RS18665	0.78	+1.9
4,021,327	+		DZA65_RS18665	0.78	+0.6
4,021,327	+		DZA65_RS18665	0.78	+0.6
4,021,327	+		DZA65_RS18665	0.78	+0.7
4,021,327	+		DZA65_RS18665	0.78	-1.1
4,021,327	+		DZA65_RS18665	0.78	+1.9
4,021,327	+		DZA65_RS18665	0.78	-1.8
4,021,327	+		DZA65_RS18665	0.78	-0.3
4,021,328	-		DZA65_RS18665	0.78	-1.2
4,021,328	-		DZA65_RS18665	0.78	-3.1
4,021,328	-		DZA65_RS18665	0.78	-0.8
4,021,328	-		DZA65_RS18665	0.78	+0.7
4,021,328	-		DZA65_RS18665	0.78	+1.1
4,021,328	-		DZA65_RS18665	0.78	-0.1
4,021,328	-		DZA65_RS18665	0.78	-1.0
4,021,328	-		DZA65_RS18665	0.78	+0.6
4,021,328	-		DZA65_RS18665	0.78	+0.6
4,021,328	-		DZA65_RS18665	0.78	+0.9
4,021,328	-		DZA65_RS18665	0.78	+0.5
4,021,328	-		DZA65_RS18665	0.78	+1.8
4,021,328	-		DZA65_RS18665	0.78	+0.0
4,021,328	-		DZA65_RS18665	0.78	+0.9
4,021,328	-		DZA65_RS18665	0.78	+0.0
4,021,328	-		DZA65_RS18665	0.78	-0.4
4,021,328	-		DZA65_RS18665	0.78	+0.2
4,021,328	-				-0.4
4,021,339	+		DZA65_RS18665	0.79	-0.2
4,021,339	+		DZA65_RS18665	0.79	+1.6
4,021,340	-		DZA65_RS18665	0.79	-0.4
4,021,355	+		DZA65_RS18665	0.80	+0.0
4,021,355	+		DZA65_RS18665	0.80	-1.7
4,021,355	+		DZA65_RS18665	0.80	+0.8
4,021,355	+		DZA65_RS18665	0.80	-1.5
4,021,356	-		DZA65_RS18665	0.80	-0.4
4,021,356	-		DZA65_RS18665	0.80	+0.5
4,021,378	+		DZA65_RS18665	0.82	-0.9
4,021,448	+				+1.4
4,021,568	+				+0.6
4,021,568	+				-0.5
4,021,568	+				+0.4
4,021,569	-				-2.7
4,021,569	-				+0.9
4,021,652	+				-1.0
4,021,652	+				-1.0
4,021,652	+				-1.0
4,021,653	-				+0.2
4,021,653	-				-1.2
4,021,653	-				-0.0
4,021,666	+				+1.8
4,021,666	+				+2.0
4,021,666	+				+0.5
4,021,667	-				-0.6
4,021,667	-				-0.4
4,021,676	+				+0.1
4,021,676	+				-1.2
4,021,676	+				+0.6
4,021,676	+				-0.2
4,021,676	+				+1.0
4,021,677	-				+1.1
4,021,677	-				-0.1
4,021,686	-				+1.4
4,021,707	-				+0.8
4,021,707	-				+0.6
4,021,754	-				+0.2
4,021,800	-				-0.2
4,021,835	-				+1.1
4,021,883	+				-0.6
4,021,883	+				+0.3
4,021,884	-				+0.3
4,021,884	-				-0.1
4,021,884	-				+0.9
4,021,884	-				+0.6
4,021,884	-				+0.2
4,021,888	+				+0.9
4,021,940	+				+0.6
4,021,940	+				-2.4
4,021,940	+				+0.4
4,021,941	-				+1.1
4,021,982	+				+0.1
4,021,982	+				-1.4
4,021,999	-				-0.6
4,021,999	-				+0.9
4,022,018	+				+0.6
4,022,018	+				+0.2
4,022,019	-				+0.6
4,022,019	-				-1.0
4,022,019	-				-1.7
4,022,019	-				-0.5
4,022,019	-				-1.0
4,022,019	-				-2.8
4,022,019	-				-0.9
4,022,022	+				+0.6
4,022,022	+				-1.0
4,022,022	+				+0.4
4,022,022	+				+0.6
4,022,022	+				-3.0
4,022,022	+				+0.1
4,022,022	+				-1.2
4,022,022	+				-0.4
4,022,022	+				+1.3
4,022,022	+				-1.3
4,022,022	+				-2.0
4,022,022	+				-2.0
4,022,022	+				-0.1
4,022,023	-				-0.4
4,022,023	-				-1.2
4,022,023	-				+1.5
4,022,023	-				+1.3
4,022,023	-				+0.4
4,022,023	-				-1.0
4,022,023	-				-1.0
4,022,023	-				-0.4
4,022,023	-				+1.6
4,022,081	+		DZA65_RS18670	0.13	+0.6
4,022,081	+		DZA65_RS18670	0.13	+0.5
4,022,081	+		DZA65_RS18670	0.13	-0.2
4,022,082	-		DZA65_RS18670	0.13	-0.5
4,022,082	-		DZA65_RS18670	0.13	+1.7
4,022,082	-		DZA65_RS18670	0.13	-0.6
4,022,082	-		DZA65_RS18670	0.13	+1.6
4,022,082	-		DZA65_RS18670	0.13	+0.8
4,022,142	-		DZA65_RS18670	0.26	-1.7
4,022,243	+		DZA65_RS18670	0.47	+1.0
4,022,243	+		DZA65_RS18670	0.47	-0.6
4,022,244	-		DZA65_RS18670	0.47	+0.1
4,022,263	+		DZA65_RS18670	0.51	-0.8
4,022,263	+		DZA65_RS18670	0.51	-2.6
4,022,264	-				-1.7
4,022,264	-		DZA65_RS18670	0.51	+1.0
4,022,264	-		DZA65_RS18670	0.51	-0.1
4,022,313	+		DZA65_RS18670	0.62	-1.7
4,022,313	+		DZA65_RS18670	0.62	+0.4
4,022,314	-				+0.9
4,022,314	-		DZA65_RS18670	0.62	-1.4
4,022,314	-		DZA65_RS18670	0.62	-0.0
4,022,315	+		DZA65_RS18670	0.62	+0.6
4,022,315	+		DZA65_RS18670	0.62	+1.4
4,022,315	+		DZA65_RS18670	0.62	+1.5
4,022,315	+		DZA65_RS18670	0.62	-0.6
4,022,315	+		DZA65_RS18670	0.62	-0.4
4,022,316	-		DZA65_RS18670	0.62	+1.2
4,022,337	+		DZA65_RS18670	0.67	-0.1
4,022,337	+		DZA65_RS18670	0.67	+0.9
4,022,337	+		DZA65_RS18670	0.67	+0.2
4,022,337	+		DZA65_RS18670	0.67	+0.7
4,022,337	+		DZA65_RS18670	0.67	-0.5
4,022,337	+		DZA65_RS18670	0.67	+0.1
4,022,337	+		DZA65_RS18670	0.67	+1.2
4,022,337	+		DZA65_RS18670	0.67	+0.4
4,022,337	+		DZA65_RS18670	0.67	-2.7
4,022,337	+		DZA65_RS18670	0.67	+0.3
4,022,337	+		DZA65_RS18670	0.67	+0.5
4,022,337	+		DZA65_RS18670	0.67	+1.4
4,022,337	+		DZA65_RS18670	0.67	-1.0
4,022,337	+		DZA65_RS18670	0.67	+0.4
4,022,337	+		DZA65_RS18670	0.67	-1.0
4,022,337	+		DZA65_RS18670	0.67	+1.2
4,022,338	-		DZA65_RS18670	0.67	-0.6
4,022,338	-		DZA65_RS18670	0.67	+0.2
4,022,338	-		DZA65_RS18670	0.67	-1.4
4,022,338	-		DZA65_RS18670	0.67	+0.0
4,022,338	-		DZA65_RS18670	0.67	-0.3
4,022,338	-		DZA65_RS18670	0.67	+0.0
4,022,338	-		DZA65_RS18670	0.67	-0.1
4,022,338	-		DZA65_RS18670	0.67	+0.8
4,022,338	-		DZA65_RS18670	0.67	-2.0
4,022,338	-		DZA65_RS18670	0.67	+0.9
4,022,338	-		DZA65_RS18670	0.67	+1.9
4,022,338	-		DZA65_RS18670	0.67	-1.3
4,022,338	-		DZA65_RS18670	0.67	+0.8
4,022,467	+				+0.7
4,022,535	+				-0.8
4,022,536	-				-0.5
4,022,536	-				-0.7
4,022,549	+				+1.4
4,022,557	-				+0.0
4,022,557	-				-0.2
4,022,558	+				+0.0
4,022,559	-				-0.5
4,022,570	-				-0.8
4,022,579	-				-0.1
4,022,582	+				+0.8
4,022,615	-				-0.5
4,022,638	-				-0.4
4,022,718	+				+2.2
4,022,719	-				-0.4
4,022,719	-				-1.0
4,022,766	+				-0.4
4,022,796	+				+1.3
4,022,796	+				+0.6
4,022,796	+				-0.7
4,022,796	+				+0.3
4,022,796	+				-1.3
4,022,796	+				+0.9
4,022,796	+				+0.4
4,022,796	+				+0.4
4,022,797	-				-3.1
4,022,797	-				-2.7
4,022,797	-				-0.8
4,022,797	-				-0.4
4,022,797	-				-1.0
4,022,797	-				+0.6
4,022,797	-				+0.1
4,022,797	-				-0.8
4,022,797	-				-1.0
4,022,797	-				+0.7
4,022,797	-				+0.1
4,022,797	-				+0.3
4,022,797	-				+0.9
4,022,797	-				+1.5
4,022,797	-				-0.4
4,022,859	+		DZA65_RS18675	0.16	-1.6
4,022,859	+		DZA65_RS18675	0.16	-0.8
4,022,859	+		DZA65_RS18675	0.16	+1.4
4,022,859	+		DZA65_RS18675	0.16	-0.8
4,022,859	+		DZA65_RS18675	0.16	+0.6
4,022,860	-		DZA65_RS18675	0.16	-0.7
4,022,860	-		DZA65_RS18675	0.16	+0.1
4,022,860	-		DZA65_RS18675	0.16	-0.6
4,022,860	-		DZA65_RS18675	0.16	-1.4
4,022,860	-		DZA65_RS18675	0.16	-1.4
4,022,860	-				-0.7
4,022,920	+		DZA65_RS18675	0.26	-0.0
4,022,921	-		DZA65_RS18675	0.26	+0.1
4,022,961	+		DZA65_RS18675	0.33	+1.0
4,022,961	+		DZA65_RS18675	0.33	-1.6
4,022,961	+		DZA65_RS18675	0.33	+0.4
4,022,961	+		DZA65_RS18675	0.33	-1.4
4,022,961	+		DZA65_RS18675	0.33	-0.8
4,022,962	-		DZA65_RS18675	0.33	-0.1
4,022,962	-		DZA65_RS18675	0.33	-2.0
4,022,974	+		DZA65_RS18675	0.35	+0.7
4,022,975	-		DZA65_RS18675	0.35	+0.1
4,022,975	-		DZA65_RS18675	0.35	+0.8
4,022,975	-		DZA65_RS18675	0.35	-1.7
4,022,977	+		DZA65_RS18675	0.35	+1.0
4,023,068	+		DZA65_RS18675	0.50	-0.8
4,023,068	+		DZA65_RS18675	0.50	-0.7
4,023,068	+		DZA65_RS18675	0.50	+0.3
4,023,068	+		DZA65_RS18675	0.50	+1.5
4,023,072	+		DZA65_RS18675	0.51	-0.7
4,023,100	+		DZA65_RS18675	0.55	+1.1
4,023,100	+		DZA65_RS18675	0.55	+0.3
4,023,183	+		DZA65_RS18675	0.69	+0.2
4,023,183	+		DZA65_RS18675	0.69	-0.8
4,023,184	-		DZA65_RS18675	0.69	-0.9
4,023,184	-		DZA65_RS18675	0.69	-0.9
4,023,184	-		DZA65_RS18675	0.69	-1.4
4,023,184	-		DZA65_RS18675	0.69	-0.6
4,023,184	-		DZA65_RS18675	0.69	-0.9
4,023,184	-		DZA65_RS18675	0.69	+1.8
4,023,196	+		DZA65_RS18675	0.71	+0.3
4,023,196	+		DZA65_RS18675	0.71	+0.4
4,023,197	-		DZA65_RS18675	0.71	+1.4
4,023,197	-		DZA65_RS18675	0.71	-0.9
4,023,200	+		DZA65_RS18675	0.71	-0.4
4,023,201	-		DZA65_RS18675	0.72	-0.5
4,023,201	-		DZA65_RS18675	0.72	+0.1
4,023,201	-		DZA65_RS18675	0.72	+2.0
4,023,251	+		DZA65_RS18675	0.80	+1.1
4,023,251	+		DZA65_RS18675	0.80	-2.3
4,023,251	+		DZA65_RS18675	0.80	-0.5
4,023,251	+		DZA65_RS18675	0.80	-0.6
4,023,251	+		DZA65_RS18675	0.80	-0.0
4,023,252	-		DZA65_RS18675	0.80	+0.4
4,023,252	-		DZA65_RS18675	0.80	-0.8
4,023,252	-		DZA65_RS18675	0.80	+0.5
4,023,252	-		DZA65_RS18675	0.80	-0.8
4,023,252	-		DZA65_RS18675	0.80	+0.6
4,023,281	+		DZA65_RS18675	0.85	+1.1
4,023,282	-		DZA65_RS18675	0.85	-0.1
4,023,288	-		DZA65_RS18675	0.86	+0.4
4,023,367	-				+1.0
4,023,367	-				-0.1
4,023,367	-				-1.0
4,023,367	-				+0.0
4,023,367	-				-0.4
4,023,393	+				+0.2
4,023,393	+				-1.9
4,023,393	+				-0.8
4,023,393	+				-1.0
4,023,393	+				+0.4
4,023,393	+				-2.0
4,023,393	+				-0.5
4,023,393	+				+1.4
4,023,393	+				-1.0
4,023,393	+				+1.2
4,023,394	-				-0.7
4,023,394	-				+1.1
4,023,394	-				+0.3
4,023,394	-				-1.0
4,023,394	-				+1.2
4,023,394	-				-1.8
4,023,394	-				+1.0
4,023,394	-				+0.0
4,023,395	+				+1.5
4,023,395	+				+0.6
4,023,395	+				+1.1
4,023,395	+				-1.0
4,023,396	-				-0.1
4,023,396	-				+1.4
4,023,396	-				+1.0
4,023,396	-				+1.4
4,023,396	-				-0.7
4,023,396	-				-0.8
4,023,396	-				+0.4
4,023,396	-				-0.4
4,023,409	+				-2.3
4,023,409	+				-0.2
4,023,452	+				+0.6
4,023,492	-				+1.6