Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18635

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
4,012,117	-				-0.4
4,012,135	+				-1.3
4,012,135	+				+0.5
4,012,135	+				+0.7
4,012,136	-				+0.0
4,012,136	-				+1.8
4,012,136	-				+0.5
4,012,136	-				+0.2
4,012,136	-				+1.5
4,012,136	-				-2.2
4,012,136	-				+0.1
4,012,138	+				+1.5
4,012,176	+				-1.9
4,012,176	+				+0.0
4,012,176	+				+0.8
4,012,177	-				-0.2
4,012,177	-				+0.5
4,012,253	+		DZA65_RS18625	0.12	+0.0
4,012,253	+		DZA65_RS18625	0.12	+0.6
4,012,254	-		DZA65_RS18625	0.12	+1.0
4,012,444	-		DZA65_RS18625	0.81	+0.0
4,012,449	+		DZA65_RS18625	0.83	+1.6
4,012,449	+		DZA65_RS18625	0.83	+0.6
4,012,449	+		DZA65_RS18625	0.83	+0.9
4,012,449	+		DZA65_RS18625	0.83	+0.9
4,012,449	+		DZA65_RS18625	0.83	+0.3
4,012,449	+		DZA65_RS18625	0.83	-0.1
4,012,449	+		DZA65_RS18625	0.83	-0.9
4,012,450	-		DZA65_RS18625	0.83	+2.3
4,012,461	+		DZA65_RS18625	0.87	-0.3
4,012,462	-		DZA65_RS18625	0.87	-2.0
4,012,464	-		DZA65_RS18625	0.88	+0.0
4,012,464	-		DZA65_RS18625	0.88	-0.2
4,012,464	-		DZA65_RS18625	0.88	+1.6
4,012,494	+				-0.1
4,012,494	+				+0.4
4,012,494	+				+0.3
4,012,528	-				+0.4
4,012,535	+				+0.1
4,012,535	+				+0.5
4,012,536	-				+0.6
4,012,536	-				-0.7
4,012,602	+				+1.8
4,012,602	+				+0.3
4,012,603	-				-1.7
4,012,603	-				+0.1
4,012,650	+				+0.6
4,012,650	+				+0.6
4,012,650	+				-0.3
4,012,650	+				-0.3
4,012,651	-				-1.8
4,012,651	-				+0.7
4,012,651	-				-2.7
4,012,654	+				+0.5
4,012,654	+				-0.4
4,012,654	+				-0.2
4,012,654	+				-0.2
4,012,654	+				+0.3
4,012,654	+				-0.7
4,012,655	-				-1.0
4,012,655	-				+0.8
4,012,655	-				+0.9
4,012,655	-				+0.7
4,012,655	-				+0.2
4,012,655	-				-0.7
4,012,655	-				+0.1
4,012,655	-				+1.6
4,012,655	-				+0.2
4,012,656	+				+0.6
4,012,657	-				+3.8
4,012,657	-				-0.5
4,012,657	-				-0.6
4,012,712	+				-2.2
4,012,712	+				-0.1
4,012,712	+				-1.0
4,012,712	+				+1.3
4,012,712	+				+0.9
4,012,712	+				-0.1
4,012,712	+				+0.6
4,012,712	+				+0.6
4,012,712	+				+0.5
4,012,712	+				-1.7
4,012,712	+				+0.1
4,012,712	+				-0.7
4,012,720	+				-1.2
4,012,720	+				-0.4
4,012,720	+				+0.8
4,012,720	+				+0.9
4,012,768	+				+0.4
4,012,768	+				+0.4
4,012,768	+				+1.1
4,012,769	-				-0.2
4,012,769	-				+0.6
4,012,778	-				+0.9
4,012,778	-				-0.7
4,012,779	+				+0.1
4,012,779	+				+0.4
4,012,779	+				+0.1
4,012,779	+				-2.7
4,012,779	+				-0.9
4,012,779	+				-0.2
4,012,779	+				-0.5
4,012,779	+				+0.1
4,012,779	+				+0.3
4,012,779	+				-1.1
4,012,779	+				+1.2
4,012,779	+				+0.7
4,012,779	+				+0.0
4,012,779	+				-0.2
4,012,779	+				-0.6
4,012,779	+				-0.2
4,012,779	+				+0.3
4,012,779	+				+1.6
4,012,779	+				+0.9
4,012,806	+				+1.3
4,012,806	+				-1.4
4,012,806	+				-0.1
4,012,806	+				-1.4
4,012,806	+				-2.3
4,012,806	+				+0.2
4,012,806	+				-1.0
4,012,807	-				+0.4
4,012,807	-				+0.7
4,012,807	-				-0.9
4,012,807	-				+0.0
4,012,848	+				-0.6
4,012,848	+				-0.8
4,012,853	+				-0.7
4,012,853	+				+0.5
4,012,853	+				+1.5
4,012,854	-				-1.2
4,012,854	-				-0.3
4,012,854	-				-0.5
4,012,857	+				-0.0
4,012,857	+				+0.6
4,012,857	+				+1.8
4,012,857	+				+0.0
4,012,857	+				+1.0
4,012,857	+				+0.2
4,012,857	+				+1.1
4,012,857	+				+0.6
4,012,857	+				+0.3
4,012,857	+				+1.6
4,012,857	+				-0.6
4,012,858	-				-1.1
4,012,858	-				-0.9
4,012,858	-				+0.6
4,012,858	-				-0.6
4,012,858	-				+0.6
4,012,858	-				-0.3
4,012,858	-				-2.2
4,012,858	-				-1.7
4,012,858	-				-0.1
4,012,858	-				-1.0
4,012,872	+				+0.6
4,012,873	-				+1.1
4,012,873	-				-2.2
4,012,873	-				+0.8
4,012,900	+				+1.0
4,012,925	-				+0.8
4,012,927	+				-0.7
4,012,927	+				-1.4
4,012,928	-				-0.0
4,012,928	-				-2.1
4,013,003	+				-0.1
4,013,003	+				-0.6
4,013,003	+				-0.9
4,013,003	+				-0.3
4,013,003	+				-0.4
4,013,003	+				-0.7
4,013,004	-				+2.6
4,013,021	+				+0.2
4,013,021	+				-0.7
4,013,021	+				+1.4
4,013,021	+				-0.4
4,013,021	+				+1.8
4,013,021	+				-0.3
4,013,021	+				-0.4
4,013,022	-				+0.1
4,013,022	-				-0.8
4,013,022	-				+0.0
4,013,022	-				-0.7
4,013,032	-				+1.6
4,013,032	-				-0.7
4,013,085	+				+1.1
4,013,085	+				+1.1
4,013,086	-				+0.0
4,013,086	-				+0.6
4,013,202	-		DZA65_RS18635	0.12	+1.3
4,013,421	+		DZA65_RS18635	0.28	-1.7
4,013,421	+		DZA65_RS18635	0.28	+0.4
4,013,422	-		DZA65_RS18635	0.28	-0.2
4,013,422	-		DZA65_RS18635	0.28	+0.8
4,013,443	+		DZA65_RS18635	0.29	+0.1
4,013,444	-				+1.2
4,013,460	+		DZA65_RS18635	0.30	-0.9
4,013,460	+		DZA65_RS18635	0.30	-1.8
4,013,460	+		DZA65_RS18635	0.30	+0.0
4,013,460	+		DZA65_RS18635	0.30	-3.2
4,013,460	+		DZA65_RS18635	0.30	-0.4
4,013,460	+		DZA65_RS18635	0.30	+0.5
4,013,460	+		DZA65_RS18635	0.30	-0.4
4,013,460	+		DZA65_RS18635	0.30	-1.8
4,013,460	+		DZA65_RS18635	0.30	-0.5
4,013,460	+		DZA65_RS18635	0.30	+2.2
4,013,460	+		DZA65_RS18635	0.30	+0.3
4,013,460	+		DZA65_RS18635	0.30	+0.0
4,013,461	-		DZA65_RS18635	0.30	+0.3
4,013,461	-		DZA65_RS18635	0.30	+2.0
4,013,461	-		DZA65_RS18635	0.30	+0.1
4,013,461	-		DZA65_RS18635	0.30	-0.2
4,013,461	-		DZA65_RS18635	0.30	+0.8
4,013,461	-		DZA65_RS18635	0.30	-0.1
4,013,461	-		DZA65_RS18635	0.30	-1.0
4,013,461	-		DZA65_RS18635	0.30	-0.1
4,013,461	-		DZA65_RS18635	0.30	+1.6
4,013,461	-		DZA65_RS18635	0.30	+0.0
4,013,461	-		DZA65_RS18635	0.30	+0.9
4,013,485	+		DZA65_RS18635	0.32	+0.6
4,013,605	+		DZA65_RS18635	0.41	-1.0
4,013,606	-		DZA65_RS18635	0.41	-0.4
4,013,606	-		DZA65_RS18635	0.41	-0.6
4,013,617	+		DZA65_RS18635	0.42	-0.4
4,013,617	+		DZA65_RS18635	0.42	-0.1
4,013,617	+		DZA65_RS18635	0.42	+1.5
4,013,617	+		DZA65_RS18635	0.42	-0.4
4,013,618	-		DZA65_RS18635	0.42	-1.6
4,013,618	-		DZA65_RS18635	0.42	+2.2
4,013,618	-		DZA65_RS18635	0.42	-1.7
4,013,618	-		DZA65_RS18635	0.42	+1.0
4,013,618	-		DZA65_RS18635	0.42	-0.7
4,013,618	-		DZA65_RS18635	0.42	-0.6
4,013,637	-		DZA65_RS18635	0.43	+1.8
4,013,716	+		DZA65_RS18635	0.49	-0.2
4,013,716	+		DZA65_RS18635	0.49	-0.3
4,013,717	-		DZA65_RS18635	0.49	+1.3
4,013,776	+		DZA65_RS18635	0.53	+1.3
4,013,776	+		DZA65_RS18635	0.53	-0.4
4,013,776	+		DZA65_RS18635	0.53	+1.0
4,013,776	+		DZA65_RS18635	0.53	-1.4
4,013,776	+		DZA65_RS18635	0.53	+2.1
4,013,777	-		DZA65_RS18635	0.53	+0.6
4,013,777	-		DZA65_RS18635	0.53	+0.4
4,013,777	-		DZA65_RS18635	0.53	-0.2
4,013,777	-		DZA65_RS18635	0.53	-1.0
4,013,845	+		DZA65_RS18635	0.58	-1.4
4,013,845	+		DZA65_RS18635	0.58	+0.0
4,013,967	-		DZA65_RS18635	0.66	+1.0
4,013,969	+		DZA65_RS18635	0.67	+0.5
4,013,970	-		DZA65_RS18635	0.67	-2.6
4,013,977	+		DZA65_RS18635	0.67	-1.2
4,013,978	-		DZA65_RS18635	0.67	+2.2
4,013,989	+		DZA65_RS18635	0.68	+0.0
4,013,989	+		DZA65_RS18635	0.68	+0.0
4,013,989	+		DZA65_RS18635	0.68	-1.2
4,013,989	+		DZA65_RS18635	0.68	+1.3
4,014,090	+		DZA65_RS18635	0.75	+0.5
4,014,096	+		DZA65_RS18635	0.76	+0.5
4,014,211	+		DZA65_RS18635	0.84	-0.1
4,014,212	-		DZA65_RS18635	0.84	-0.6
4,014,256	+		DZA65_RS18635	0.87	+1.3
4,014,327	+				-0.8
4,014,327	+				+0.3
4,014,327	+				-0.2
4,014,328	-				+1.3
4,014,328	-				-1.1
4,014,353	+				+1.1
4,014,353	+				+0.4
4,014,353	+				-0.5
4,014,354	-				-0.0
4,014,354	-				+0.4
4,014,354	-				+0.6
4,014,354	-				-1.6
4,014,374	+				+1.1
4,014,375	-				+1.3
4,014,375	-				-1.8
4,014,378	+				+1.2
4,014,378	+				-1.2
4,014,378	+				-1.6
4,014,379	-				+0.4
4,014,379	-				-0.0
4,014,379	-				-0.1
4,014,379	-				-0.1
4,014,381	+				-0.5
4,014,381	+				+1.0
4,014,381	+				-0.4
4,014,381	+				-0.2
4,014,381	+				-2.1
4,014,381	+				+1.6
4,014,381	+				+1.1
4,014,381	+				-2.4
4,014,381	+				+0.3
4,014,382	-				+0.8
4,014,382	-				+0.6
4,014,382	-				-1.9
4,014,382	-				-1.6
4,014,382	-				-0.4
4,014,382	-				-1.5
4,014,382	-				+0.3
4,014,382	-				+1.1
4,014,382	-				+2.4
4,014,382	-				-0.7
4,014,382	-				+1.0
4,014,382	-				+0.8
4,014,439	+				+0.1
4,014,440	-				-0.7
4,014,463	+				-0.5
4,014,463	+				+0.2
4,014,463	+				-2.0
4,014,464	-				-0.4
4,014,506	-				+1.4
4,014,506	-				+0.3
4,014,506	-				+0.4
4,014,621	+				+0.4
4,014,679	-				+1.1
4,014,701	-				+1.2
4,014,732	+				-0.8
4,014,732	+				+0.0
4,014,732	+				-1.1
4,014,732	+				+1.0
4,014,732	+				-0.8
4,014,732	+				-2.0
4,014,732	+				-1.0
4,014,733	-				+0.2
4,014,733	-				-1.0
4,014,733	-				-1.4
4,014,733	-				+0.6
4,014,733	-				+0.6
4,014,733	-				-0.2
4,014,733	-				-0.7
4,014,733	-				+1.3
4,014,733	-				-0.6
4,014,733	-				+1.6
4,014,735	+				-1.2
4,014,735	+				-0.4
4,014,735	+				+0.3
4,014,735	+				+1.0
4,014,735	+				-2.2
4,014,735	+				-0.3
4,014,822	+				+1.3
4,014,823	-				+0.2
4,014,823	-				+2.4
4,014,823	-				+0.1
4,014,826	+				-1.7
4,014,826	+				+2.2
4,014,826	+				-1.4
4,014,826	+				+1.0
4,014,826	+				+0.4
4,014,827	-				+0.1
4,015,022	-		DZA65_RS18640	0.20	-0.2
4,015,022	-		DZA65_RS18640	0.20	-0.1
4,015,022	-		DZA65_RS18640	0.20	+0.1
4,015,022	-		DZA65_RS18640	0.20	-0.4
4,015,022	-		DZA65_RS18640	0.20	-0.3
4,015,048	+		DZA65_RS18640	0.22	+0.6
4,015,048	+		DZA65_RS18640	0.22	-0.3
4,015,049	-		DZA65_RS18640	0.22	+0.6
4,015,148	+		DZA65_RS18640	0.32	+0.9
4,015,148	+		DZA65_RS18640	0.32	+0.2
4,015,166	+		DZA65_RS18640	0.34	-1.4
4,015,166	+		DZA65_RS18640	0.34	-3.2
4,015,167	-		DZA65_RS18640	0.34	+0.6
4,015,167	-		DZA65_RS18640	0.34	+1.7
4,015,167	-		DZA65_RS18640	0.34	-0.2
4,015,186	+		DZA65_RS18640	0.36	+0.2
4,015,186	+		DZA65_RS18640	0.36	+1.8
4,015,186	+		DZA65_RS18640	0.36	-1.0
4,015,186	+		DZA65_RS18640	0.36	+0.2
4,015,186	+		DZA65_RS18640	0.36	+1.5
4,015,186	+		DZA65_RS18640	0.36	-0.4
4,015,186	+		DZA65_RS18640	0.36	-0.4
4,015,186	+		DZA65_RS18640	0.36	-2.1
4,015,186	+		DZA65_RS18640	0.36	+0.0
4,015,186	+		DZA65_RS18640	0.36	+1.2
4,015,187	-		DZA65_RS18640	0.36	+0.5
4,015,187	-		DZA65_RS18640	0.36	+0.1
4,015,187	-		DZA65_RS18640	0.36	-0.5
4,015,187	-		DZA65_RS18640	0.36	+0.3
4,015,187	-		DZA65_RS18640	0.36	-0.4
4,015,187	-		DZA65_RS18640	0.36	+0.3
4,015,187	-		DZA65_RS18640	0.36	+3.2
4,015,187	-		DZA65_RS18640	0.36	+0.1
4,015,252	+		DZA65_RS18640	0.43	+0.3
4,015,252	+		DZA65_RS18640	0.43	-0.4
4,015,252	+		DZA65_RS18640	0.43	-0.6
4,015,256	+		DZA65_RS18640	0.43	+1.3
4,015,256	+		DZA65_RS18640	0.43	+0.4
4,015,256	+		DZA65_RS18640	0.43	-0.4
4,015,256	+		DZA65_RS18640	0.43	+0.6
4,015,257	-		DZA65_RS18640	0.43	+0.2
4,015,257	-		DZA65_RS18640	0.43	-1.7
4,015,320	+		DZA65_RS18640	0.49	-0.6
4,015,321	-		DZA65_RS18640	0.50	+0.2
4,015,420	+		DZA65_RS18640	0.59	+0.6
4,015,420	+		DZA65_RS18640	0.59	+0.1
4,015,420	+		DZA65_RS18640	0.59	+0.6
4,015,420	+		DZA65_RS18640	0.59	+2.2
4,015,420	+		DZA65_RS18640	0.59	-2.0
4,015,420	+		DZA65_RS18640	0.59	-0.4
4,015,420	+				+1.9
4,015,420	+		DZA65_RS18640	0.59	+0.1
4,015,421	-		DZA65_RS18640	0.59	+0.1
4,015,421	-		DZA65_RS18640	0.59	+0.4
4,015,421	-		DZA65_RS18640	0.59	-0.7
4,015,421	-		DZA65_RS18640	0.59	+0.1
4,015,438	+		DZA65_RS18640	0.61	-1.7
4,015,438	+		DZA65_RS18640	0.61	-1.2
4,015,439	-		DZA65_RS18640	0.61	-0.4
4,015,439	-		DZA65_RS18640	0.61	+2.6
4,015,439	-		DZA65_RS18640	0.61	+0.7