Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17330

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,735,745	+				-2.1
3,735,746	-				+2.2
3,735,763	+				+0.7
3,735,763	+				+0.0
3,735,764	-				-1.4
3,735,774	-				-1.0
3,735,774	-				+0.5
3,735,774	-				+0.6
3,735,775	+				-2.5
3,735,775	+				+0.9
3,735,775	+				-0.2
3,735,775	+				-1.5
3,735,775	+				+1.0
3,735,775	+				+0.9
3,735,775	+				-2.5
3,735,775	+				-0.2
3,735,775	+				-1.0
3,735,775	+				-0.3
3,735,775	+				+0.7
3,735,775	+				+0.1
3,735,775	+				+0.9
3,735,775	+				+0.5
3,735,775	+				+0.6
3,735,775	+				-2.5
3,735,776	-				-0.3
3,735,776	-				-0.4
3,735,776	-				-0.3
3,735,776	-				+0.5
3,735,776	-				+0.5
3,735,776	-				+0.3
3,735,776	-				+0.5
3,735,776	-				+1.6
3,735,776	-				+1.3
3,735,776	-				+0.1
3,735,776	-				-1.3
3,735,776	-				+0.3
3,735,776	-				-0.4
3,735,776	-				-0.7
3,735,776	-				+0.3
3,735,776	-				-1.1
3,735,776	-				-0.2
3,735,776	-				-0.2
3,735,776	-				+1.0
3,735,776	-				-0.4
3,735,776	-				+0.3
3,735,776	-				+0.8
3,735,776	-				+0.8
3,735,776	-				+0.5
3,735,776	-				-0.3
3,735,776	-				-0.3
3,735,776	-				-0.5
3,735,779	+				-0.0
3,735,779	+				-0.1
3,735,779	+				+0.4
3,735,780	-				-0.5
3,735,780	-				-0.7
3,735,780	-				+1.5
3,735,780	-				+0.8
3,735,780	-				+0.2
3,735,805	+				+0.6
3,735,805	+				-2.5
3,735,806	-				+2.6
3,735,806	-				+0.5
3,735,847	+				+0.5
3,735,848	-				+0.4
3,735,848	-				+0.5
3,735,850	+				+2.0
3,735,850	+				-0.1
3,735,851	-				-0.1
3,735,853	+				-0.8
3,735,854	-				-1.3
3,735,854	-				+0.5
3,735,895	+				-0.1
3,735,900	+				-1.4
3,735,900	+				+0.5
3,735,901	-				-0.2
3,735,901	-				+0.2
3,735,901	-				+1.4
3,735,902	+				+0.7
3,735,903	-				+0.6
3,735,903	-				+0.3
3,735,903	-				+0.3
3,735,903	-				+3.6
3,735,925	+				-0.5
3,735,925	+				+0.3
3,735,926	-				+0.5
3,735,926	-				-2.2
3,735,982	+		DZA65_RS17325	0.11	+0.3
3,735,982	+		DZA65_RS17325	0.11	-0.5
3,735,983	-		DZA65_RS17325	0.12	-0.3
3,735,983	-		DZA65_RS17325	0.12	-0.6
3,735,983	-		DZA65_RS17325	0.12	-0.5
3,735,983	-		DZA65_RS17325	0.12	+2.0
3,735,983	-		DZA65_RS17325	0.12	+0.8
3,735,983	-		DZA65_RS17325	0.12	-0.5
3,735,983	-		DZA65_RS17325	0.12	+0.2
3,735,983	-		DZA65_RS17325	0.12	+0.1
3,735,983	-		DZA65_RS17325	0.12	-0.9
3,736,025	+		DZA65_RS17325	0.17	-1.5
3,736,031	+		DZA65_RS17325	0.18	+0.5
3,736,031	+		DZA65_RS17325	0.18	-0.1
3,736,048	-		DZA65_RS17325	0.21	-1.7
3,736,048	-		DZA65_RS17325	0.21	-0.1
3,736,048	-		DZA65_RS17325	0.21	+0.7
3,736,052	-		DZA65_RS17325	0.21	-1.5
3,736,052	-		DZA65_RS17325	0.21	-0.3
3,736,052	-		DZA65_RS17325	0.21	+0.9
3,736,052	-		DZA65_RS17325	0.21	+0.6
3,736,067	-		DZA65_RS17325	0.23	+0.5
3,736,067	-		DZA65_RS17325	0.23	+2.5
3,736,081	+		DZA65_RS17325	0.25	+1.7
3,736,081	+		DZA65_RS17325	0.25	+0.8
3,736,081	+		DZA65_RS17325	0.25	-0.4
3,736,082	-		DZA65_RS17325	0.25	+0.2
3,736,114	+		DZA65_RS17325	0.30	+0.2
3,736,114	+		DZA65_RS17325	0.30	-0.3
3,736,114	+		DZA65_RS17325	0.30	-0.9
3,736,114	+		DZA65_RS17325	0.30	+0.8
3,736,114	+		DZA65_RS17325	0.30	-0.3
3,736,114	+		DZA65_RS17325	0.30	-1.0
3,736,114	+		DZA65_RS17325	0.30	-0.3
3,736,114	+		DZA65_RS17325	0.30	-0.5
3,736,114	+		DZA65_RS17325	0.30	+1.5
3,736,114	+		DZA65_RS17325	0.30	+0.4
3,736,114	+		DZA65_RS17325	0.30	-0.1
3,736,115	-		DZA65_RS17325	0.30	-0.5
3,736,115	-		DZA65_RS17325	0.30	-0.9
3,736,115	-		DZA65_RS17325	0.30	-3.1
3,736,115	-		DZA65_RS17325	0.30	+0.4
3,736,115	-		DZA65_RS17325	0.30	-0.5
3,736,115	-		DZA65_RS17325	0.30	+0.5
3,736,115	-		DZA65_RS17325	0.30	+0.3
3,736,115	-		DZA65_RS17325	0.30	+0.3
3,736,115	-		DZA65_RS17325	0.30	-0.5
3,736,214	+		DZA65_RS17325	0.43	+1.8
3,736,214	+		DZA65_RS17325	0.43	-1.2
3,736,214	+		DZA65_RS17325	0.43	+0.7
3,736,215	-		DZA65_RS17325	0.44	-0.3
3,736,215	-		DZA65_RS17325	0.44	+0.2
3,736,354	+		DZA65_RS17325	0.63	-2.2
3,736,354	+		DZA65_RS17325	0.63	-0.5
3,736,354	+		DZA65_RS17325	0.63	-0.2
3,736,354	+				+0.0
3,736,354	+		DZA65_RS17325	0.63	-1.9
3,736,354	+		DZA65_RS17325	0.63	+1.0
3,736,354	+		DZA65_RS17325	0.63	-0.9
3,736,354	+		DZA65_RS17325	0.63	+2.7
3,736,354	+		DZA65_RS17325	0.63	+1.0
3,736,354	+		DZA65_RS17325	0.63	+0.7
3,736,354	+		DZA65_RS17325	0.63	-0.6
3,736,355	-		DZA65_RS17325	0.63	-0.0
3,736,355	-		DZA65_RS17325	0.63	-0.5
3,736,355	-		DZA65_RS17325	0.63	-0.5
3,736,355	-		DZA65_RS17325	0.63	-0.5
3,736,355	-		DZA65_RS17325	0.63	-1.0
3,736,355	-		DZA65_RS17325	0.63	-0.3
3,736,355	-		DZA65_RS17325	0.63	-2.1
3,736,355	-		DZA65_RS17325	0.63	+1.2
3,736,355	-		DZA65_RS17325	0.63	+0.3
3,736,355	-		DZA65_RS17325	0.63	-1.1
3,736,355	-		DZA65_RS17325	0.63	+0.7
3,736,355	-		DZA65_RS17325	0.63	-1.2
3,736,355	-		DZA65_RS17325	0.63	-1.0
3,736,355	-		DZA65_RS17325	0.63	-0.3
3,736,356	+		DZA65_RS17325	0.63	-1.1
3,736,356	+		DZA65_RS17325	0.63	-0.2
3,736,356	+		DZA65_RS17325	0.63	+0.0
3,736,357	-		DZA65_RS17325	0.63	-0.8
3,736,357	-		DZA65_RS17325	0.63	+1.0
3,736,357	-		DZA65_RS17325	0.63	-0.5
3,736,539	+		DZA65_RS17325	0.88	+0.6
3,736,539	+		DZA65_RS17325	0.88	-1.7
3,736,539	+		DZA65_RS17325	0.88	+1.0
3,736,539	+		DZA65_RS17325	0.88	+0.5
3,736,540	-		DZA65_RS17325	0.88	+0.7
3,736,540	-		DZA65_RS17325	0.88	-2.0
3,736,540	-		DZA65_RS17325	0.88	-0.0
3,736,578	+				-0.1
3,736,578	+				-0.5
3,736,579	-				-0.5
3,736,579	-				+0.9
3,736,617	-				+1.3
3,736,664	+				+0.8
3,736,686	+				+0.7
3,736,687	-				+0.5
3,736,754	+		DZA65_RS17330	0.11	-1.3
3,736,754	+		DZA65_RS17330	0.11	-1.2
3,736,754	+		DZA65_RS17330	0.11	-0.3
3,736,755	-		DZA65_RS17330	0.11	-0.5
3,736,755	-		DZA65_RS17330	0.11	+0.2
3,736,762	+				+1.2
3,736,820	+		DZA65_RS17330	0.18	+1.5
3,736,865	-		DZA65_RS17330	0.23	-1.0
3,736,865	-		DZA65_RS17330	0.23	-1.1
3,736,895	+		DZA65_RS17330	0.26	-0.5
3,736,896	-		DZA65_RS17330	0.26	-2.9
3,736,896	-		DZA65_RS17330	0.26	-2.3
3,736,959	-		DZA65_RS17330	0.32	+1.1
3,737,043	-		DZA65_RS17330	0.41	-0.1
3,737,111	-		DZA65_RS17330	0.48	+0.5
3,737,111	-		DZA65_RS17330	0.48	+0.5
3,737,235	+		DZA65_RS17330	0.60	-0.3
3,737,294	+		DZA65_RS17330	0.66	-0.1
3,737,331	-		DZA65_RS17330	0.70	-0.8
3,737,331	-		DZA65_RS17330	0.70	-1.9
3,737,359	+		DZA65_RS17330	0.73	-0.5
3,737,360	-		DZA65_RS17330	0.73	-1.5
3,737,471	+		DZA65_RS17330	0.85	+0.5
3,737,472	-		DZA65_RS17330	0.85	-1.9
3,737,472	-		DZA65_RS17330	0.85	-0.3
3,737,562	+				-0.4
3,737,563	-				+0.1
3,737,607	+				-1.5
3,737,607	+				-0.1
3,737,607	+				+0.9
3,737,608	-				-1.6
3,737,608	-				-0.0
3,737,608	-				-0.9
3,737,621	+				-0.5
3,737,621	+				+0.6
3,737,621	+				-0.0
3,737,622	-				-0.6
3,737,622	-				-0.6
3,737,622	-				-0.1
3,737,622	-				-0.4
3,737,622	-				-0.4
3,737,622	-				-2.9
3,737,624	+				-1.0
3,737,624	+				+0.0
3,737,624	+				-1.2
3,737,624	+				-0.5
3,737,624	+				-2.3
3,737,625	-				+1.0
3,737,625	-				+0.6
3,737,625	-				+0.2
3,737,625	-				-0.2
3,737,625	-				-1.1
3,737,625	-				-3.3
3,737,625	-				-1.0
3,737,636	+				+0.2
3,737,636	+				+0.9
3,737,637	-				+0.5
3,737,653	-				-0.1
3,737,673	+				+0.9
3,737,678	+				+0.5
3,737,678	+				-2.3
3,737,678	+				-1.3
3,737,686	+				-0.3
3,737,686	+				-0.5
3,737,686	+				+0.2
3,737,696	+				-1.2
3,737,708	+				-2.0
3,738,507	+				-1.3
3,738,508	-				-0.6
3,738,508	-				+0.1
3,738,508	-				-0.3
3,738,508	-				-0.8
3,738,510	+				+0.7
3,738,511	-				-0.9
3,738,511	-				+0.9
3,738,558	+				+0.9
3,738,558	+				+0.2
3,738,558	+				+0.5
3,738,558	+				+1.5
3,738,558	+				+1.1
3,738,558	+				-0.0
3,738,558	+				-2.1
3,738,558	+				+1.5
3,738,558	+				-1.1
3,738,558	+				-0.0
3,738,558	+				-0.1
3,738,559	-				+0.5
3,738,559	-				-0.1
3,738,559	-				+1.3
3,738,559	-				+0.2
3,738,559	-				-0.5
3,738,559	-				+0.8
3,738,559	-				-1.9
3,738,559	-				+0.8
3,738,579	+				-2.1
3,738,605	+				-0.4
3,738,605	+				+1.1
3,738,606	-				-0.5
3,738,606	-				-0.7
3,738,608	+				+1.5
3,738,609	-				-1.2
3,738,609	-				-0.3
3,738,612	+				+0.9
3,738,612	+				-0.1
3,738,612	+				+1.5
3,738,613	-				+0.5
3,738,613	-				+0.5
3,738,613	-				-2.9
3,738,613	-				-0.9