Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17085

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,687,117	+		DZA65_RS17080	0.32	+0.6
3,687,118	-		DZA65_RS17080	0.32	-0.9
3,687,150	+		DZA65_RS17080	0.35	-1.6
3,687,150	+		DZA65_RS17080	0.35	-0.4
3,687,150	+		DZA65_RS17080	0.35	+0.4
3,687,150	+		DZA65_RS17080	0.35	+1.0
3,687,150	+		DZA65_RS17080	0.35	-0.6
3,687,150	+		DZA65_RS17080	0.35	+1.4
3,687,150	+		DZA65_RS17080	0.35	-1.1
3,687,151	-		DZA65_RS17080	0.35	+0.2
3,687,151	-		DZA65_RS17080	0.35	-1.4
3,687,151	-		DZA65_RS17080	0.35	+0.2
3,687,151	-		DZA65_RS17080	0.35	-0.1
3,687,151	-		DZA65_RS17080	0.35	+0.9
3,687,151	-		DZA65_RS17080	0.35	+1.2
3,687,353	+		DZA65_RS17080	0.52	-1.1
3,687,353	+		DZA65_RS17080	0.52	+1.3
3,687,353	+		DZA65_RS17080	0.52	+0.3
3,687,353	+		DZA65_RS17080	0.52	-0.6
3,687,354	-		DZA65_RS17080	0.52	+0.4
3,687,354	-		DZA65_RS17080	0.52	-1.3
3,687,354	-		DZA65_RS17080	0.52	-1.0
3,687,354	-		DZA65_RS17080	0.52	+0.1
3,687,374	+		DZA65_RS17080	0.54	+0.4
3,687,802	+				+0.2
3,687,803	-				-0.6
3,687,803	-				+0.7
3,687,897	+				-0.0
3,687,898	-				-1.4
3,687,923	+				-1.1
3,687,924	-				+0.1
3,687,924	-				-0.4
3,687,924	-				-0.1
3,687,964	-				+0.9
3,688,082	+				+0.0
3,688,113	-				+0.3
3,688,120	-				+0.4
3,688,120	-				-2.1
3,688,120	-				+0.0
3,688,168	+				+0.1
3,688,169	-				+1.4
3,688,286	-		DZA65_RS17085	0.13	+1.0
3,688,313	+		DZA65_RS17085	0.14	-0.6
3,688,313	+		DZA65_RS17085	0.14	+0.7
3,688,313	+		DZA65_RS17085	0.14	-1.5
3,688,313	+		DZA65_RS17085	0.14	-1.1
3,688,314	-		DZA65_RS17085	0.15	-1.7
3,688,321	+		DZA65_RS17085	0.15	-1.1
3,688,400	+		DZA65_RS17085	0.20	-0.9
3,688,400	+		DZA65_RS17085	0.20	+0.8
3,688,400	+		DZA65_RS17085	0.20	-1.7
3,688,401	-				+0.0
3,688,625	-		DZA65_RS17085	0.36	+0.1
3,688,625	-		DZA65_RS17085	0.36	-0.1
3,688,686	+		DZA65_RS17085	0.40	-1.1
3,688,687	-		DZA65_RS17085	0.40	+0.7
3,688,720	+		DZA65_RS17085	0.42	+0.1
3,688,721	-		DZA65_RS17085	0.43	+0.2
3,688,723	+		DZA65_RS17085	0.43	-1.0
3,688,805	-		DZA65_RS17085	0.48	+0.4
3,688,872	+		DZA65_RS17085	0.53	-1.0
3,688,872	+		DZA65_RS17085	0.53	-0.8
3,688,873	-		DZA65_RS17085	0.53	-0.1
3,688,873	-		DZA65_RS17085	0.53	+0.0
3,688,873	-		DZA65_RS17085	0.53	+0.3
3,688,912	+		DZA65_RS17085	0.56	-1.1
3,688,912	+		DZA65_RS17085	0.56	-1.1
3,688,912	+		DZA65_RS17085	0.56	+0.4
3,688,913	-		DZA65_RS17085	0.56	-0.9
3,688,913	-				+0.4
3,688,913	-		DZA65_RS17085	0.56	-1.0
3,688,969	-		DZA65_RS17085	0.60	-1.1
3,688,969	-				+0.4
3,688,969	-		DZA65_RS17085	0.60	-1.0
3,689,005	+		DZA65_RS17085	0.62	-0.1
3,689,005	+		DZA65_RS17085	0.62	-0.6
3,689,005	+		DZA65_RS17085	0.62	-0.2
3,689,005	+		DZA65_RS17085	0.62	-0.2
3,689,006	-		DZA65_RS17085	0.62	-0.2
3,689,006	-		DZA65_RS17085	0.62	-0.4
3,689,006	-		DZA65_RS17085	0.62	+0.7
3,689,048	+		DZA65_RS17085	0.65	+0.1
3,689,048	+		DZA65_RS17085	0.65	-0.1
3,689,048	+		DZA65_RS17085	0.65	+0.4
3,689,049	-		DZA65_RS17085	0.65	-2.5
3,689,049	-		DZA65_RS17085	0.65	-0.5
3,689,049	-		DZA65_RS17085	0.65	+0.6
3,689,093	-		DZA65_RS17085	0.68	+0.8
3,689,093	-		DZA65_RS17085	0.68	-0.9
3,689,138	+		DZA65_RS17085	0.71	+0.4
3,689,139	-		DZA65_RS17085	0.71	-1.2
3,689,139	-		DZA65_RS17085	0.71	+0.1
3,689,160	+		DZA65_RS17085	0.73	-0.4
3,689,160	+		DZA65_RS17085	0.73	-0.0
3,689,160	+		DZA65_RS17085	0.73	+0.1
3,689,160	+		DZA65_RS17085	0.73	-2.9
3,689,160	+		DZA65_RS17085	0.73	-0.2
3,689,160	+		DZA65_RS17085	0.73	-0.9
3,689,161	-		DZA65_RS17085	0.73	-1.6
3,689,161	-		DZA65_RS17085	0.73	+1.4
3,689,161	-		DZA65_RS17085	0.73	-0.0
3,689,161	-				-0.1
3,689,161	-		DZA65_RS17085	0.73	-0.6
3,689,161	-		DZA65_RS17085	0.73	-1.1
3,689,161	-		DZA65_RS17085	0.73	+0.9
3,689,161	-		DZA65_RS17085	0.73	+0.1
3,689,372	-		DZA65_RS17085	0.87	+0.0
3,689,372	-		DZA65_RS17085	0.87	-1.9
3,689,389	+		DZA65_RS17085	0.89	-1.6
3,689,389	+		DZA65_RS17085	0.89	-0.2
3,689,389	+		DZA65_RS17085	0.89	-2.0
3,689,390	-		DZA65_RS17085	0.89	-1.0
3,689,390	-		DZA65_RS17085	0.89	-0.2
3,689,390	-		DZA65_RS17085	0.89	-0.1
3,689,390	-		DZA65_RS17085	0.89	+0.4
3,689,390	-		DZA65_RS17085	0.89	-0.4
3,689,555	-				+0.9
3,689,555	-				+0.1
3,689,560	+				+0.4
3,689,560	+				-0.3
3,689,561	-				-1.7
3,689,598	+				-1.0
3,689,599	-				+0.5
3,689,599	-				+1.1
3,689,599	-				-0.4
3,689,630	-				-1.9
3,689,649	-				+0.6
3,689,686	+				-0.4
3,689,691	-				+0.2
3,689,743	+				+1.1
3,689,743	+				+0.4
3,689,744	-				-0.1
3,689,753	-				-2.1
3,689,753	-				-0.6
3,689,758	+				+3.4
3,689,758	+				+0.4
3,689,758	+				-1.6
3,689,758	+				+1.4
3,689,758	+				-0.3
3,689,758	+				+0.9
3,689,758	+				-0.6
3,689,758	+				+0.5
3,689,758	+				+0.2
3,689,759	-				-0.6
3,689,759	-				-0.9
3,689,759	-				-0.7
3,689,759	-				-0.4
3,689,759	-				+0.9
3,689,759	-				+0.2
3,689,760	+				-1.3
3,689,760	+				+0.2
3,689,760	+				+1.4
3,689,760	+				-3.1
3,689,760	+				+0.2
3,689,761	-				+0.0
3,689,761	-				-1.6
3,689,761	-				-0.2
3,689,761	-				-0.4
3,689,761	-				+0.2
3,689,761	-				+0.4
3,689,772	-				-0.5
3,689,782	+				-0.9
3,689,782	+				+1.3
3,689,783	-				+0.2
3,689,783	-				-1.1
3,689,783	-				-0.3
3,689,809	+				+1.0
3,689,809	+				-0.6
3,689,809	+				+0.6
3,689,809	+				-0.4
3,689,809	+				+2.0
3,689,809	+				+0.2
3,689,809	+				+0.1
3,689,809	+				+0.3
3,689,809	+				+0.0
3,689,809	+				+0.1
3,689,809	+				-1.2
3,689,810	-				-0.6
3,689,810	-				-2.4
3,689,810	-				-0.0
3,689,810	-				+0.4
3,689,810	-				+2.3
3,689,810	-				+0.4
3,689,810	-				-1.1
3,689,810	-				+0.2
3,689,810	-				+1.0
3,689,810	-				+1.6
3,689,812	+				+0.1
3,689,812	+				+1.4
3,689,813	-				-0.0
3,689,813	-				-1.9
3,689,813	-				+1.0
3,689,872	+		DZA65_RS17090	0.10	-0.6
3,689,905	+		DZA65_RS17090	0.12	+1.3
3,689,905	+		DZA65_RS17090	0.12	-0.6
3,689,905	+		DZA65_RS17090	0.12	-0.3
3,689,905	+		DZA65_RS17090	0.12	-0.3
3,689,906	-		DZA65_RS17090	0.12	+1.7
3,689,906	-		DZA65_RS17090	0.12	-0.4
3,689,906	-		DZA65_RS17090	0.12	+0.4
3,689,906	-		DZA65_RS17090	0.12	-1.6
3,689,906	-		DZA65_RS17090	0.12	-0.2
3,689,919	+		DZA65_RS17090	0.13	+1.3
3,689,995	+		DZA65_RS17090	0.18	-0.2
3,689,996	-		DZA65_RS17090	0.18	-0.8
3,690,062	+		DZA65_RS17090	0.23	-1.1
3,690,063	-		DZA65_RS17090	0.23	-0.6
3,690,063	-		DZA65_RS17090	0.23	-1.7
3,690,063	-		DZA65_RS17090	0.23	+1.3
3,690,063	-		DZA65_RS17090	0.23	+0.0
3,690,099	+		DZA65_RS17090	0.25	-1.6
3,690,100	-		DZA65_RS17090	0.25	+1.3
3,690,100	-		DZA65_RS17090	0.25	-1.0
3,690,160	+		DZA65_RS17090	0.29	-0.6
3,690,160	+		DZA65_RS17090	0.29	+0.0
3,690,161	-		DZA65_RS17090	0.29	-0.2
3,690,182	+		DZA65_RS17090	0.31	+0.8
3,690,222	-		DZA65_RS17090	0.33	+0.2
3,690,289	+		DZA65_RS17090	0.38	-1.5
3,690,373	+		DZA65_RS17090	0.43	-0.1
3,690,377	+		DZA65_RS17090	0.43	+0.3
3,690,377	+		DZA65_RS17090	0.43	+0.1
3,690,378	-		DZA65_RS17090	0.43	-1.1
3,690,393	+		DZA65_RS17090	0.44	-1.9
3,690,428	+		DZA65_RS17090	0.47	-1.1
3,690,429	-		DZA65_RS17090	0.47	-0.2
3,690,429	-		DZA65_RS17090	0.47	-0.1
3,690,451	+		DZA65_RS17090	0.48	+0.4
3,690,451	+		DZA65_RS17090	0.48	-0.9
3,690,451	+		DZA65_RS17090	0.48	+1.0
3,690,451	+		DZA65_RS17090	0.48	+1.0
3,690,451	+		DZA65_RS17090	0.48	-0.3
3,690,451	+		DZA65_RS17090	0.48	-0.3
3,690,451	+		DZA65_RS17090	0.48	+0.2
3,690,451	+		DZA65_RS17090	0.48	+0.3
3,690,451	+		DZA65_RS17090	0.48	-0.5
3,690,451	+		DZA65_RS17090	0.48	+0.4
3,690,451	+		DZA65_RS17090	0.48	+0.7
3,690,451	+		DZA65_RS17090	0.48	+1.6
3,690,451	+		DZA65_RS17090	0.48	-0.3
3,690,451	+		DZA65_RS17090	0.48	-0.6
3,690,452	-		DZA65_RS17090	0.48	+0.6
3,690,452	-		DZA65_RS17090	0.48	-0.6
3,690,452	-		DZA65_RS17090	0.48	-0.6
3,690,452	-		DZA65_RS17090	0.48	-0.4
3,690,452	-		DZA65_RS17090	0.48	+0.4
3,690,452	-		DZA65_RS17090	0.48	-0.9
3,690,452	-		DZA65_RS17090	0.48	-1.0
3,690,452	-		DZA65_RS17090	0.48	+0.7
3,690,452	-		DZA65_RS17090	0.48	-2.6
3,690,452	-		DZA65_RS17090	0.48	+0.1
3,690,452	-		DZA65_RS17090	0.48	+0.4
3,690,452	-		DZA65_RS17090	0.48	+0.1
3,690,529	+		DZA65_RS17090	0.53	-2.0
3,690,529	+		DZA65_RS17090	0.53	-0.7
3,690,530	-		DZA65_RS17090	0.53	+1.8
3,690,553	+		DZA65_RS17090	0.55	-0.6
3,690,553	+		DZA65_RS17090	0.55	-0.3
3,690,553	+		DZA65_RS17090	0.55	+0.0
3,690,553	+		DZA65_RS17090	0.55	+0.7
3,690,553	+		DZA65_RS17090	0.55	+1.0
3,690,553	+		DZA65_RS17090	0.55	+0.2
3,690,553	+		DZA65_RS17090	0.55	+0.1
3,690,553	+		DZA65_RS17090	0.55	+1.3
3,690,553	+		DZA65_RS17090	0.55	+3.3
3,690,554	-		DZA65_RS17090	0.55	-2.1
3,690,554	-		DZA65_RS17090	0.55	+0.3
3,690,554	-		DZA65_RS17090	0.55	+0.4
3,690,554	-		DZA65_RS17090	0.55	+0.7
3,690,554	-		DZA65_RS17090	0.55	+0.5