Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16150

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,497,494	-				-0.5
3,497,515	+				-1.2
3,497,516	-				-0.2
3,497,555	+				-0.4
3,497,555	+				-0.0
3,497,555	+				+0.4
3,497,557	+				+1.0
3,497,558	-				+0.4
3,497,584	+				+0.4
3,497,612	+				+0.9
3,497,613	-				-0.1
3,497,639	+				+1.4
3,497,639	+				+0.2
3,497,639	+				-0.6
3,497,639	+				-0.1
3,497,644	+				-1.2
3,497,644	+				-1.0
3,497,644	+				-3.1
3,497,644	+				+1.3
3,497,645	-				+0.6
3,497,645	-				+0.4
3,497,645	-				+0.8
3,497,645	-				-1.2
3,497,700	+				+0.1
3,497,701	-				-1.6
3,497,701	-				-0.0
3,497,739	+				+1.1
3,497,739	+				+0.2
3,497,739	+				+0.2
3,497,765	+				-0.6
3,497,765	+				-0.1
3,497,765	+				+0.8
3,497,765	+				-0.9
3,497,766	-				+0.3
3,497,766	-				+0.1
3,497,846	-				-1.9
3,497,846	-				-0.1
3,497,982	-				-0.6
3,497,990	+				+0.4
3,497,990	+				+0.4
3,497,990	+				+0.3
3,497,990	+				-1.4
3,497,991	-				-0.6
3,497,992	+				-0.8
3,497,992	+				+0.4
3,497,992	+				-0.3
3,497,992	+				-0.3
3,497,992	+				+0.8
3,497,992	+				-0.6
3,497,992	+				+0.4
3,497,993	-				+0.6
3,497,993	-				+1.0
3,497,993	-				+0.6
3,497,993	-				-0.4
3,497,993	-				+0.4
3,497,993	-				-0.3
3,497,993	-				-0.2
3,497,993	-				-1.9
3,497,994	+				-1.3
3,497,994	+				-0.4
3,497,994	+				-0.5
3,498,001	+				-0.1
3,498,001	+				-2.4
3,498,002	-				-0.6
3,498,037	-				+2.0
3,498,043	-				-1.9
3,498,048	-				+1.1
3,498,048	-				-0.2
3,498,053	+				-0.5
3,498,067	+				+0.6
3,498,067	+				-0.6
3,498,098	+				-0.0
3,498,098	+				-0.4
3,498,098	+				-0.5
3,498,099	-				-2.4
3,498,101	+				-0.6
3,498,101	+				-0.3
3,498,102	-				+0.4
3,498,108	+				+0.2
3,498,114	-				+0.4
3,498,114	-				-0.3
3,498,167	+				+1.1
3,498,217	+				-0.0
3,498,218	-				+1.7
3,498,385	+				-0.5
3,498,385	+				-0.0
3,498,385	+				-1.1
3,498,386	-				+0.7
3,498,422	+				+0.2
3,498,422	+				+0.8
3,498,422	+				+1.7
3,498,422	+				-0.6
3,498,423	-				-0.4
3,498,423	-				+1.0
3,498,444	-				+0.1
3,498,444	-				-0.6
3,498,449	+				-0.6
3,498,449	+				-1.2
3,498,449	+				-1.7
3,498,449	+				-0.1
3,498,449	+				+1.4
3,498,450	-				+0.2
3,498,454	+				+0.4
3,498,454	+				+0.1
3,498,454	+				+0.1
3,498,454	+				-0.8
3,498,455	-				+0.4
3,498,455	-				-2.3
3,498,455	-				-0.2
3,498,682	+		DZA65_RS16150	0.23	-0.4
3,498,683	-		DZA65_RS16150	0.24	-0.0
3,498,683	-		DZA65_RS16150	0.24	-0.0
3,498,740	-		DZA65_RS16150	0.29	-0.2
3,498,772	+		DZA65_RS16150	0.33	-0.4
3,498,772	+		DZA65_RS16150	0.33	-0.6
3,498,773	-		DZA65_RS16150	0.33	-2.2
3,498,775	+		DZA65_RS16150	0.33	-1.5
3,498,776	-		DZA65_RS16150	0.33	-0.1
3,498,829	+		DZA65_RS16150	0.39	+0.2
3,498,829	+		DZA65_RS16150	0.39	-0.2
3,498,830	-		DZA65_RS16150	0.39	+0.2
3,498,844	+		DZA65_RS16150	0.40	+1.1
3,498,844	+				-0.2
3,498,844	+		DZA65_RS16150	0.40	+0.5
3,498,844	+		DZA65_RS16150	0.40	+0.1
3,498,845	-		DZA65_RS16150	0.40	-1.9
3,498,845	-		DZA65_RS16150	0.40	+0.6
3,498,853	+		DZA65_RS16150	0.41	+1.0
3,498,853	+		DZA65_RS16150	0.41	-0.6
3,498,854	-		DZA65_RS16150	0.41	-1.9
3,498,854	-		DZA65_RS16150	0.41	+0.6
3,498,874	+		DZA65_RS16150	0.43	-0.6
3,498,934	+		DZA65_RS16150	0.50	-0.9
3,498,935	-		DZA65_RS16150	0.50	+0.5
3,498,935	-		DZA65_RS16150	0.50	+0.1
3,498,935	-		DZA65_RS16150	0.50	+2.7
3,498,935	-		DZA65_RS16150	0.50	+0.0
3,498,935	-		DZA65_RS16150	0.50	-1.6
3,498,957	+		DZA65_RS16150	0.52	+0.4
3,499,014	-		DZA65_RS16150	0.58	+0.5
3,499,019	+		DZA65_RS16150	0.58	+0.9
3,499,019	+		DZA65_RS16150	0.58	-0.2
3,499,019	+		DZA65_RS16150	0.58	-0.6
3,499,019	+		DZA65_RS16150	0.58	+0.8
3,499,020	-		DZA65_RS16150	0.59	-0.0
3,499,039	+		DZA65_RS16150	0.61	+0.1
3,499,039	+		DZA65_RS16150	0.61	+0.3
3,499,049	+		DZA65_RS16150	0.62	+0.6
3,499,049	+		DZA65_RS16150	0.62	-1.6
3,499,050	-		DZA65_RS16150	0.62	+0.5
3,499,051	+		DZA65_RS16150	0.62	-1.2
3,499,051	+		DZA65_RS16150	0.62	+0.5
3,499,051	+		DZA65_RS16150	0.62	-0.4
3,499,051	+		DZA65_RS16150	0.62	-0.2
3,499,051	+		DZA65_RS16150	0.62	+1.5
3,499,051	+		DZA65_RS16150	0.62	+0.0
3,499,051	+		DZA65_RS16150	0.62	+0.3
3,499,052	-		DZA65_RS16150	0.62	-0.4
3,499,052	-		DZA65_RS16150	0.62	+1.0
3,499,097	+		DZA65_RS16150	0.67	+0.2
3,499,097	+		DZA65_RS16150	0.67	+0.1
3,499,097	+		DZA65_RS16150	0.67	+0.6
3,499,098	-		DZA65_RS16150	0.67	+1.1
3,499,098	-		DZA65_RS16150	0.67	-0.2
3,499,099	+		DZA65_RS16150	0.67	-2.2
3,499,099	+		DZA65_RS16150	0.67	+1.4
3,499,099	+		DZA65_RS16150	0.67	-1.6
3,499,099	+		DZA65_RS16150	0.67	+0.6
3,499,099	+		DZA65_RS16150	0.67	+2.0
3,499,099	+		DZA65_RS16150	0.67	-1.2
3,499,100	-		DZA65_RS16150	0.67	-1.5
3,499,100	-		DZA65_RS16150	0.67	-0.1
3,499,100	-		DZA65_RS16150	0.67	+0.7
3,499,100	-		DZA65_RS16150	0.67	+0.2
3,499,100	-		DZA65_RS16150	0.67	-0.3
3,499,143	+		DZA65_RS16150	0.71	+1.7
3,499,143	+		DZA65_RS16150	0.71	+0.5
3,499,157	+		DZA65_RS16150	0.73	+0.5
3,499,157	+		DZA65_RS16150	0.73	+1.8
3,499,158	-		DZA65_RS16150	0.73	-0.1
3,499,161	+		DZA65_RS16150	0.73	-1.2
3,499,227	-		DZA65_RS16150	0.80	+1.1
3,499,249	+		DZA65_RS16150	0.82	-0.6
3,499,249	+		DZA65_RS16150	0.82	-0.1
3,499,250	-		DZA65_RS16150	0.82	+1.3
3,499,268	+		DZA65_RS16150	0.84	-1.6
3,499,268	+		DZA65_RS16150	0.84	-0.1
3,499,268	+		DZA65_RS16150	0.84	+0.4
3,499,269	-		DZA65_RS16150	0.84	+0.3
3,499,329	-				+1.1
3,499,373	+				+2.0
3,499,373	+				-0.7
3,499,374	-				+1.0
3,499,374	-				+0.8
3,499,398	+				-0.3
3,499,398	+				+2.7
3,499,398	+				-1.2
3,499,398	+				-0.0
3,499,398	+				-0.5
3,499,398	+				+0.3
3,499,398	+				+0.2
3,499,399	-				+1.5
3,499,399	-				-1.2
3,499,399	-				-0.7
3,499,399	-				-0.1
3,499,399	-				-0.9
3,499,472	+				+0.9
3,499,472	+				-1.5
3,499,506	+				-1.5
3,499,506	+				-0.3
3,499,537	+				-0.6
3,499,537	+				-1.4
3,499,537	+				-0.8
3,499,537	+				-0.4
3,499,537	+				-1.5
3,499,538	-				+0.4
3,499,538	-				+0.4
3,499,558	+				-1.0
3,499,577	+				+0.2
3,499,596	+				+1.1
3,499,596	+				+0.8
3,499,596	+				-0.8
3,499,596	+				-0.4
3,499,596	+				-0.8
3,499,596	+				-1.0
3,499,597	-				-1.6
3,499,597	-				-1.7
3,499,597	-				-0.1
3,499,609	-				+1.2
3,499,609	-				+0.1
3,499,621	+				-0.2
3,499,621	+				-0.8
3,499,621	+				-1.4
3,499,621	+				+0.1
3,499,622	-				+0.9
3,499,625	+				+0.2
3,499,625	+				+0.5
3,499,691	+				-0.8
3,499,766	+				-0.4
3,499,766	+				-0.9
3,499,767	-				-1.3
3,499,767	-				+0.1
3,499,767	-				+0.6
3,499,780	+				+0.4
3,499,804	-		DZA65_RS16155	0.11	-0.2
3,499,815	+		DZA65_RS16155	0.12	+0.1
3,499,816	-		DZA65_RS16155	0.12	+1.0
3,499,925	+		DZA65_RS16155	0.21	+0.4
3,499,925	+		DZA65_RS16155	0.21	-1.0
3,499,925	+		DZA65_RS16155	0.21	-1.0
3,499,926	-		DZA65_RS16155	0.22	-1.5
3,499,948	+		DZA65_RS16155	0.23	-0.6
3,499,949	-				+0.8
3,500,166	+		DZA65_RS16155	0.42	+0.4
3,500,166	+				-0.6
3,500,166	+		DZA65_RS16155	0.42	-0.5
3,500,166	+		DZA65_RS16155	0.42	-1.2
3,500,166	+		DZA65_RS16155	0.42	+1.1
3,500,166	+		DZA65_RS16155	0.42	-0.8
3,500,167	-		DZA65_RS16155	0.42	+0.4
3,500,167	-				+0.4
3,500,167	-		DZA65_RS16155	0.42	+0.4
3,500,167	-		DZA65_RS16155	0.42	+0.2
3,500,167	-		DZA65_RS16155	0.42	+0.7
3,500,167	-		DZA65_RS16155	0.42	+1.1
3,500,167	-		DZA65_RS16155	0.42	+0.1
3,500,171	+		DZA65_RS16155	0.42	+0.3
3,500,171	+		DZA65_RS16155	0.42	+0.7
3,500,172	-		DZA65_RS16155	0.42	+1.8
3,500,172	-		DZA65_RS16155	0.42	+1.7
3,500,220	+		DZA65_RS16155	0.46	+0.0
3,500,220	+		DZA65_RS16155	0.46	+0.4
3,500,220	+		DZA65_RS16155	0.46	-0.7
3,500,220	+		DZA65_RS16155	0.46	+0.4
3,500,220	+		DZA65_RS16155	0.46	+0.4
3,500,220	+		DZA65_RS16155	0.46	-0.1
3,500,221	-		DZA65_RS16155	0.47	+0.9
3,500,221	-		DZA65_RS16155	0.47	+1.4
3,500,221	-		DZA65_RS16155	0.47	+1.4
3,500,221	-		DZA65_RS16155	0.47	-3.2
3,500,244	+		DZA65_RS16155	0.48	+0.1
3,500,245	-		DZA65_RS16155	0.49	+0.4
3,500,245	-		DZA65_RS16155	0.49	-0.8
3,500,311	-		DZA65_RS16155	0.54	+0.1
3,500,388	+		DZA65_RS16155	0.61	+0.1
3,500,388	+		DZA65_RS16155	0.61	-0.4