Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16070

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,483,386	+				-0.1
3,483,386	+				+0.7
3,483,387	-				-0.6
3,483,387	-				+0.6
3,483,388	+				-0.4
3,483,388	+				-0.3
3,483,388	+				+0.7
3,483,388	+				+1.0
3,483,389	-				-2.4
3,483,408	-				-0.9
3,483,539	+		DZA65_RS16060	0.42	-0.6
3,483,539	+		DZA65_RS16060	0.42	-0.4
3,483,540	-		DZA65_RS16060	0.42	-0.2
3,483,609	+		DZA65_RS16060	0.68	+0.3
3,483,609	+		DZA65_RS16060	0.68	+0.3
3,483,657	-		DZA65_RS16060	0.86	-0.8
3,483,657	-		DZA65_RS16060	0.86	+0.4
3,483,687	+				-1.5
3,483,741	+				+0.9
3,483,741	+				-0.8
3,483,741	+				-0.4
3,483,741	+				-0.4
3,483,741	+				-0.4
3,483,742	-				-0.9
3,483,742	-				+1.4
3,483,742	-				-0.9
3,483,742	-				+0.1
3,483,746	+				+1.9
3,483,747	-				+1.7
3,483,808	-		DZA65_RS16065	0.16	+0.5
3,483,808	-		DZA65_RS16065	0.16	+1.9
3,483,808	-		DZA65_RS16065	0.16	-0.2
3,483,845	+		DZA65_RS16065	0.24	-0.0
3,483,845	+		DZA65_RS16065	0.24	+1.1
3,483,845	+		DZA65_RS16065	0.24	-0.1
3,483,845	+		DZA65_RS16065	0.24	-0.9
3,483,845	+				+1.2
3,483,845	+		DZA65_RS16065	0.24	+1.0
3,483,845	+		DZA65_RS16065	0.24	-0.3
3,483,845	+				+1.4
3,483,845	+		DZA65_RS16065	0.24	+0.0
3,483,846	-		DZA65_RS16065	0.25	-1.1
3,483,846	-		DZA65_RS16065	0.25	-0.4
3,483,846	-		DZA65_RS16065	0.25	+0.1
3,483,907	+		DZA65_RS16065	0.39	+0.4
3,483,955	+		DZA65_RS16065	0.50	+1.5
3,483,955	+		DZA65_RS16065	0.50	+1.5
3,483,955	+		DZA65_RS16065	0.50	-0.5
3,483,956	-		DZA65_RS16065	0.50	-0.6
3,483,956	-		DZA65_RS16065	0.50	-0.5
3,483,956	-		DZA65_RS16065	0.50	-2.6
3,483,956	-		DZA65_RS16065	0.50	+1.4
3,483,956	-		DZA65_RS16065	0.50	-0.1
3,483,956	-		DZA65_RS16065	0.50	-0.3
3,484,139	-				+0.8
3,484,151	+				+0.5
3,484,152	-				+0.2
3,484,152	-				-0.0
3,484,162	+				-0.4
3,484,162	+				-1.0
3,484,162	+				-1.8
3,484,162	+				+0.2
3,484,163	-				+1.5
3,484,164	+				-0.1
3,484,164	+				+0.1
3,484,164	+				+0.2
3,484,164	+				-0.6
3,484,164	+				-0.1
3,484,164	+				+0.7
3,484,164	+				-0.9
3,484,164	+				+0.4
3,484,164	+				-0.6
3,484,164	+				+1.1
3,484,164	+				-0.3
3,484,164	+				-0.6
3,484,164	+				+0.5
3,484,164	+				-0.3
3,484,164	+				-1.6
3,484,164	+				+0.4
3,484,164	+				-0.1
3,484,165	-				-0.4
3,484,165	-				+0.2
3,484,165	-				+0.4
3,484,165	-				-2.9
3,484,165	-				-1.2
3,484,165	-				+0.2
3,484,165	-				+0.9
3,484,165	-				-0.6
3,484,165	-				-0.1
3,484,165	-				+0.1
3,484,196	-				-0.7
3,484,196	-				+1.1
3,484,197	+				-0.2
3,484,197	+				-1.1
3,484,198	-				-2.2
3,484,198	-				+1.8
3,484,208	+				-1.3
3,484,208	+				+0.8
3,484,208	+				-0.4
3,484,209	-				+0.6
3,484,246	-				-0.2
3,484,335	+				-0.6
3,484,335	+				+1.0
3,484,335	+				+0.4
3,484,336	-				+1.0
3,484,339	-				-0.1
3,484,339	-				-1.6
3,484,464	-		DZA65_RS16070	0.23	+1.0
3,484,471	+		DZA65_RS16070	0.25	+0.4
3,484,471	+		DZA65_RS16070	0.25	-0.9
3,484,471	+		DZA65_RS16070	0.25	+0.5
3,484,491	+		DZA65_RS16070	0.31	+2.0
3,484,491	+		DZA65_RS16070	0.31	-0.6
3,484,491	+		DZA65_RS16070	0.31	+0.4
3,484,492	-		DZA65_RS16070	0.31	+1.2
3,484,492	-				-0.2
3,484,685	+		DZA65_RS16070	0.84	-0.9
3,484,685	+		DZA65_RS16070	0.84	-0.6
3,484,685	+		DZA65_RS16070	0.84	+1.2
3,484,685	+		DZA65_RS16070	0.84	-2.4
3,484,685	+		DZA65_RS16070	0.84	+1.4
3,484,685	+		DZA65_RS16070	0.84	+0.3
3,484,685	+		DZA65_RS16070	0.84	+0.4
3,484,685	+		DZA65_RS16070	0.84	-0.0
3,484,685	+		DZA65_RS16070	0.84	+0.9
3,484,685	+				-1.2
3,484,685	+		DZA65_RS16070	0.84	+0.2
3,484,685	+		DZA65_RS16070	0.84	-0.7
3,484,685	+		DZA65_RS16070	0.84	+0.8
3,484,685	+				-1.6
3,484,685	+		DZA65_RS16070	0.84	+0.5
3,484,685	+		DZA65_RS16070	0.84	-1.7
3,484,686	-		DZA65_RS16070	0.85	-0.3
3,484,686	-		DZA65_RS16070	0.85	-0.9
3,484,686	-		DZA65_RS16070	0.85	+1.3
3,484,686	-		DZA65_RS16070	0.85	+1.2
3,484,686	-		DZA65_RS16070	0.85	+1.1
3,484,686	-		DZA65_RS16070	0.85	-1.0
3,484,686	-		DZA65_RS16070	0.85	-1.3
3,484,686	-		DZA65_RS16070	0.85	-0.1
3,484,686	-		DZA65_RS16070	0.85	-0.9
3,484,686	-		DZA65_RS16070	0.85	+1.3
3,484,686	-				+1.4
3,484,686	-		DZA65_RS16070	0.85	+0.4
3,484,686	-		DZA65_RS16070	0.85	+1.0
3,484,686	-		DZA65_RS16070	0.85	+0.8
3,484,686	-		DZA65_RS16070	0.85	-1.9
3,484,686	-		DZA65_RS16070	0.85	-0.9
3,484,686	-		DZA65_RS16070	0.85	+0.1
3,484,686	-		DZA65_RS16070	0.85	+1.1
3,484,686	-		DZA65_RS16070	0.85	-0.2
3,484,686	-		DZA65_RS16070	0.85	+0.3
3,484,687	+		DZA65_RS16070	0.85	-1.4
3,484,687	+		DZA65_RS16070	0.85	+0.5
3,484,687	+		DZA65_RS16070	0.85	-1.2
3,484,819	+		DZA65_RS16075	0.13	-0.3
3,484,819	+		DZA65_RS16075	0.13	+0.2
3,484,820	-		DZA65_RS16075	0.13	+0.5
3,484,855	+		DZA65_RS16075	0.19	-0.4
3,484,855	+		DZA65_RS16075	0.19	-1.3
3,484,855	+		DZA65_RS16075	0.19	+1.2
3,484,855	+		DZA65_RS16075	0.19	+2.7
3,484,856	-		DZA65_RS16075	0.20	-0.6
3,484,856	-		DZA65_RS16075	0.20	+0.3
3,484,907	-		DZA65_RS16075	0.29	+0.4
3,484,923	-		DZA65_RS16075	0.32	+0.7
3,484,935	+		DZA65_RS16075	0.34	-0.3
3,484,977	+		DZA65_RS16075	0.42	+1.4
3,484,978	-		DZA65_RS16075	0.42	+1.2
3,484,978	-		DZA65_RS16075	0.42	-0.1
3,485,003	-		DZA65_RS16075	0.47	-0.2
3,485,003	-		DZA65_RS16075	0.47	-0.4
3,485,053	-		DZA65_RS16075	0.56	-0.6
3,485,085	-		DZA65_RS16075	0.62	+1.2
3,485,221	+		DZA65_RS16075	0.88	-0.2
3,485,221	+		DZA65_RS16075	0.88	-0.5
3,485,221	+		DZA65_RS16075	0.88	-1.6
3,485,222	-		DZA65_RS16075	0.88	-0.0
3,485,222	-		DZA65_RS16075	0.88	-0.8
3,485,222	-		DZA65_RS16075	0.88	+2.2
3,485,222	-		DZA65_RS16075	0.88	+2.2
3,485,222	-		DZA65_RS16075	0.88	-0.6
3,485,276	+				-1.0
3,485,276	+				-0.6
3,485,276	+				-1.4
3,485,276	+				-0.2
3,485,277	-				-0.9
3,485,277	-				-0.5
3,485,277	-				+0.2
3,485,277	-				+0.9
3,485,277	-				-0.5
3,485,319	+				-0.2
3,485,319	+				-2.2
3,485,320	-				+0.7
3,485,324	+				+1.0
3,485,324	+				+1.4
3,485,324	+				+0.3
3,485,324	+				+0.8
3,485,324	+				+0.2
3,485,325	-				+1.4
3,485,325	-				-2.2
3,485,325	-				+0.8
3,485,325	-				+0.4
3,485,325	-				+0.1
3,485,325	-				-1.3
3,485,325	-				-0.2
3,485,325	-				+0.2
3,485,349	+				+0.4
3,485,349	+				+0.6
3,485,349	+				+0.1
3,485,350	-				+0.1
3,485,353	+				-0.0
3,485,353	+				+1.0
3,485,353	+				+0.1
3,485,353	+				-0.6
3,485,353	+				+0.1
3,485,353	+				+0.6
3,485,353	+				+1.1
3,485,353	+				+2.5
3,485,354	-				-0.2
3,485,354	-				+0.3
3,485,354	-				-0.9
3,485,354	-				+1.7
3,485,421	-				+1.2
3,485,421	-				-1.9
3,485,664	+				+0.6
3,485,675	-				+0.4
3,485,675	-				+0.2
3,485,688	+				+0.1
3,485,688	+				+1.1
3,485,688	+				-1.4
3,485,689	-				+0.2
3,485,689	-				-0.3
3,485,689	-				+0.1
3,485,693	+				+0.1
3,485,694	-				+0.4
3,485,702	+				-0.2
3,485,702	+				+0.1
3,485,702	+				+0.2
3,485,702	+				-0.8
3,485,702	+				-0.7
3,485,703	-				+0.7
3,485,703	-				-1.2
3,485,703	-				-0.8
3,485,703	-				-0.0
3,485,706	+				-0.2
3,485,706	+				+0.2
3,485,706	+				+1.4
3,485,707	-				-0.0
3,485,707	-				-0.2
3,485,707	-				+0.5
3,485,707	-				+1.2
3,485,707	-				+2.2
3,485,707	-				+0.1
3,485,707	-				-1.2
3,485,707	-				+0.6
3,485,715	+				-0.3
3,485,722	+				-0.9
3,485,722	+				-0.3
3,485,722	+				-0.8
3,485,722	+				-0.4
3,485,722	+				-0.9
3,485,722	+				+0.6
3,485,723	-				+0.0
3,485,723	-				-1.0
3,485,723	-				-0.3
3,485,737	-				-0.6