Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15435

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,345,663	-		DZA65_RS15425	0.87	-1.3
3,345,696	+				+1.1
3,345,727	+				+0.3
3,345,727	+				+0.7
3,345,727	+				+0.0
3,345,727	+				+0.8
3,345,727	+				+0.6
3,345,727	+				+0.2
3,345,727	+				-0.6
3,345,727	+				-1.5
3,345,727	+				+2.1
3,345,727	+				+0.1
3,345,727	+				-1.1
3,345,728	-				-0.5
3,345,728	-				+2.5
3,345,728	-				+0.6
3,345,728	-				-0.2
3,345,728	-				-1.0
3,345,728	-				-0.7
3,345,728	-				-0.3
3,345,728	-				-0.7
3,345,768	-				-1.3
3,345,781	+				-1.1
3,345,781	+				-0.1
3,345,854	+		DZA65_RS15430	0.13	+0.3
3,345,854	+		DZA65_RS15430	0.13	+0.2
3,345,855	-		DZA65_RS15430	0.13	-1.3
3,345,881	+		DZA65_RS15430	0.17	-0.1
3,345,881	+		DZA65_RS15430	0.17	-1.7
3,345,881	+		DZA65_RS15430	0.17	-0.3
3,345,966	+		DZA65_RS15430	0.29	-0.4
3,345,967	-		DZA65_RS15430	0.30	-0.3
3,346,148	+		DZA65_RS15430	0.56	-0.8
3,346,149	-		DZA65_RS15430	0.56	-2.0
3,346,192	+		DZA65_RS15430	0.63	+0.3
3,346,193	-		DZA65_RS15430	0.63	+0.1
3,346,234	-		DZA65_RS15430	0.69	-0.0
3,346,267	+		DZA65_RS15430	0.74	-1.0
3,346,341	+		DZA65_RS15430	0.85	-0.3
3,346,349	+		DZA65_RS15430	0.86	+0.3
3,346,349	+		DZA65_RS15430	0.86	+0.2
3,346,349	+		DZA65_RS15430	0.86	+0.4
3,346,349	+		DZA65_RS15430	0.86	+1.7
3,346,349	+				-0.7
3,346,349	+		DZA65_RS15430	0.86	+0.1
3,346,349	+		DZA65_RS15430	0.86	+0.1
3,346,349	+		DZA65_RS15430	0.86	+0.3
3,346,349	+		DZA65_RS15430	0.86	+0.1
3,346,349	+		DZA65_RS15430	0.86	-0.1
3,346,349	+		DZA65_RS15430	0.86	+0.5
3,346,350	-		DZA65_RS15430	0.86	-0.1
3,346,350	-		DZA65_RS15430	0.86	+1.1
3,346,350	-		DZA65_RS15430	0.86	-0.3
3,346,350	-		DZA65_RS15430	0.86	+1.3
3,346,350	-		DZA65_RS15430	0.86	-0.2
3,346,350	-		DZA65_RS15430	0.86	+1.2
3,346,350	-		DZA65_RS15430	0.86	+0.6
3,346,350	-		DZA65_RS15430	0.86	-0.3
3,346,350	-		DZA65_RS15430	0.86	-0.1
3,346,350	-		DZA65_RS15430	0.86	+0.6
3,346,350	-		DZA65_RS15430	0.86	-0.4
3,346,350	-		DZA65_RS15430	0.86	-0.3
3,346,350	-		DZA65_RS15430	0.86	+1.0
3,346,350	-		DZA65_RS15430	0.86	+0.4
3,346,350	-		DZA65_RS15430	0.86	+0.7
3,346,352	+		DZA65_RS15430	0.86	+0.3
3,346,352	+		DZA65_RS15430	0.86	-0.9
3,346,393	-				+0.1
3,346,398	+				-1.7
3,346,399	-				-0.8
3,346,399	-				+0.3
3,346,399	-				-0.9
3,346,399	-				-0.5
3,346,435	+				+2.1
3,346,435	+				+0.8
3,346,436	-				+0.7
3,346,436	-				+0.0
3,346,446	+				-0.7
3,346,447	-				+1.4
3,346,447	-				-0.5
3,346,447	-				-0.4
3,346,476	+				+0.2
3,346,476	+				-0.7
3,346,476	+				+0.8
3,346,476	+				-1.8
3,346,476	+				-1.7
3,346,476	+				-1.1
3,346,480	+				-0.1
3,346,480	+				+0.6
3,346,480	+				+0.0
3,346,480	+				+0.2
3,346,480	+				+0.3
3,346,480	+				+0.6
3,346,480	+				-0.0
3,346,480	+				-0.7
3,346,481	-				-1.8
3,346,481	-				+0.7
3,346,523	+				+1.1
3,346,523	+				-0.4
3,346,523	+				-0.4
3,346,524	-				+0.6
3,346,524	-				+2.3
3,346,524	-				+1.5
3,346,524	-				+0.2
3,346,524	-				+2.0
3,346,537	-				-0.7
3,346,554	-				+0.3
3,346,594	-				-1.3
3,346,595	+				+0.3
3,346,595	+				+1.9
3,346,595	+				-0.7
3,346,595	+				+0.1
3,346,596	-				-1.3
3,346,663	-				+0.1
3,346,663	-				-0.1
3,346,833	-		DZA65_RS15435	0.20	+0.9
3,346,833	-		DZA65_RS15435	0.20	-0.5
3,346,833	-		DZA65_RS15435	0.20	+0.3
3,346,836	-		DZA65_RS15435	0.20	-0.7
3,346,836	-		DZA65_RS15435	0.20	+1.5
3,346,836	-		DZA65_RS15435	0.20	-0.7
3,346,868	+		DZA65_RS15435	0.22	+0.3
3,346,868	+		DZA65_RS15435	0.22	-0.4
3,346,869	-		DZA65_RS15435	0.22	+0.2
3,346,869	-		DZA65_RS15435	0.22	+0.1
3,346,869	-		DZA65_RS15435	0.22	-0.7
3,346,938	+		DZA65_RS15435	0.27	-3.1
3,346,938	+		DZA65_RS15435	0.27	-1.0
3,346,939	-		DZA65_RS15435	0.27	-1.5
3,346,939	-		DZA65_RS15435	0.27	+0.7
3,346,947	+		DZA65_RS15435	0.28	-3.5
3,346,947	+		DZA65_RS15435	0.28	+0.2
3,346,947	+		DZA65_RS15435	0.28	-0.5
3,346,947	+		DZA65_RS15435	0.28	+1.3
3,347,087	+		DZA65_RS15435	0.38	-0.8
3,347,087	+		DZA65_RS15435	0.38	-0.9
3,347,087	+		DZA65_RS15435	0.38	-0.7
3,347,088	-		DZA65_RS15435	0.38	-2.3
3,347,088	-		DZA65_RS15435	0.38	-1.0
3,347,088	-		DZA65_RS15435	0.38	-0.3
3,347,100	+		DZA65_RS15435	0.39	-0.1
3,347,101	-		DZA65_RS15435	0.39	+0.1
3,347,101	-		DZA65_RS15435	0.39	+0.5
3,347,101	-		DZA65_RS15435	0.39	+0.3
3,347,101	-		DZA65_RS15435	0.39	-1.1
3,347,101	-		DZA65_RS15435	0.39	+0.1
3,347,104	-		DZA65_RS15435	0.39	-1.7
3,347,104	-		DZA65_RS15435	0.39	-1.5
3,347,104	-		DZA65_RS15435	0.39	+1.3
3,347,112	+		DZA65_RS15435	0.39	-0.1
3,347,115	-		DZA65_RS15435	0.40	-2.3
3,347,115	-		DZA65_RS15435	0.40	-0.3
3,347,164	-		DZA65_RS15435	0.43	-0.4
3,347,210	+		DZA65_RS15435	0.46	-1.3
3,347,210	+		DZA65_RS15435	0.46	-0.3
3,347,210	+		DZA65_RS15435	0.46	-1.3
3,347,211	-		DZA65_RS15435	0.46	+0.3
3,347,211	-		DZA65_RS15435	0.46	+0.1
3,347,211	-				+0.3
3,347,211	-		DZA65_RS15435	0.46	+0.3
3,347,242	-		DZA65_RS15435	0.49	-0.0
3,347,305	+		DZA65_RS15435	0.53	-1.8
3,347,305	+		DZA65_RS15435	0.53	-0.2
3,347,305	+		DZA65_RS15435	0.53	-0.3
3,347,334	+		DZA65_RS15435	0.55	-0.9
3,347,391	+		DZA65_RS15435	0.59	+1.6
3,347,401	+		DZA65_RS15435	0.60	-0.8
3,347,656	+		DZA65_RS15435	0.78	-0.4
3,347,656	+		DZA65_RS15435	0.78	+0.4
3,347,657	-		DZA65_RS15435	0.78	-0.9
3,347,657	-		DZA65_RS15435	0.78	-0.1
3,347,657	-		DZA65_RS15435	0.78	+1.5
3,347,720	+		DZA65_RS15435	0.82	+0.2
3,347,720	+		DZA65_RS15435	0.82	-0.4
3,347,720	+		DZA65_RS15435	0.82	+0.3
3,347,720	+		DZA65_RS15435	0.82	-0.4
3,347,720	+		DZA65_RS15435	0.82	-0.9
3,347,720	+		DZA65_RS15435	0.82	+2.3
3,347,720	+		DZA65_RS15435	0.82	-0.1
3,347,720	+		DZA65_RS15435	0.82	-2.3
3,347,720	+		DZA65_RS15435	0.82	-0.1
3,347,720	+		DZA65_RS15435	0.82	+1.3
3,347,720	+		DZA65_RS15435	0.82	-0.4
3,347,720	+		DZA65_RS15435	0.82	-0.1
3,347,721	-		DZA65_RS15435	0.82	-2.3
3,347,721	-		DZA65_RS15435	0.82	-1.0
3,347,721	-		DZA65_RS15435	0.82	+0.5
3,347,721	-		DZA65_RS15435	0.82	-0.2
3,347,721	-		DZA65_RS15435	0.82	+0.9
3,347,760	+				+1.6
3,347,761	-		DZA65_RS15435	0.85	-1.2
3,347,761	-		DZA65_RS15435	0.85	-2.3
3,347,761	-		DZA65_RS15435	0.85	-1.7
3,347,780	+		DZA65_RS15435	0.87	-0.7
3,347,781	-		DZA65_RS15435	0.87	-0.2
3,347,781	-		DZA65_RS15435	0.87	-0.9
3,347,831	+				-0.4
3,347,831	+				-0.5
3,347,831	+				-1.3
3,347,832	-				-2.0
3,347,832	-				+0.1
3,347,832	-				-1.1
3,347,860	+				-1.3
3,347,932	+				-0.3
3,348,123	-				-0.7
3,348,132	+				+1.3
3,348,299	+		DZA65_RS15440	0.15	+0.6
3,348,299	+		DZA65_RS15440	0.15	+0.1
3,348,300	-		DZA65_RS15440	0.15	+1.0
3,348,330	+		DZA65_RS15440	0.19	+0.3
3,348,330	+				+0.3
3,348,331	-		DZA65_RS15440	0.19	-0.7
3,348,498	-		DZA65_RS15440	0.37	-0.4
3,348,538	+		DZA65_RS15440	0.41	+0.8
3,348,539	-		DZA65_RS15440	0.42	+2.4
3,348,539	-		DZA65_RS15440	0.42	+0.9
3,348,571	+		DZA65_RS15440	0.45	+0.5
3,348,572	-		DZA65_RS15440	0.45	+0.7
3,348,736	+		DZA65_RS15440	0.63	+0.0
3,348,736	+		DZA65_RS15440	0.63	-0.5
3,348,736	+		DZA65_RS15440	0.63	+0.5
3,348,736	+		DZA65_RS15440	0.63	-1.5
3,348,736	+		DZA65_RS15440	0.63	-0.4
3,348,737	-		DZA65_RS15440	0.63	+1.2
3,348,738	+		DZA65_RS15440	0.63	-0.3
3,348,739	-		DZA65_RS15440	0.63	-0.3
3,348,762	+		DZA65_RS15440	0.66	-0.1
3,348,780	+		DZA65_RS15440	0.68	+0.1
3,348,781	-		DZA65_RS15440	0.68	-0.3
3,348,781	-		DZA65_RS15440	0.68	-0.2
3,348,781	-		DZA65_RS15440	0.68	+0.3
3,348,815	+		DZA65_RS15440	0.72	+0.0
3,348,815	+		DZA65_RS15440	0.72	-0.8
3,348,815	+		DZA65_RS15440	0.72	+0.6
3,348,816	-		DZA65_RS15440	0.72	-0.0
3,348,816	-		DZA65_RS15440	0.72	-0.6
3,348,816	-		DZA65_RS15440	0.72	-0.2
3,348,816	-		DZA65_RS15440	0.72	+1.1
3,348,827	+		DZA65_RS15440	0.73	+0.1
3,348,827	+		DZA65_RS15440	0.73	+0.1
3,348,827	+		DZA65_RS15440	0.73	+0.7
3,348,828	-		DZA65_RS15440	0.73	+0.5
3,348,828	-		DZA65_RS15440	0.73	-1.7
3,348,845	+		DZA65_RS15440	0.75	-0.4
3,348,845	+		DZA65_RS15440	0.75	-0.2
3,348,845	+		DZA65_RS15440	0.75	-1.8
3,348,846	-		DZA65_RS15440	0.75	+0.3
3,348,846	-		DZA65_RS15440	0.75	+0.3
3,348,846	-		DZA65_RS15440	0.75	+0.3
3,348,883	+		DZA65_RS15440	0.79	+0.7
3,348,883	+		DZA65_RS15440	0.79	-1.1
3,348,884	-		DZA65_RS15440	0.79	-0.5
3,348,898	+		DZA65_RS15440	0.81	+0.9
3,348,898	+		DZA65_RS15440	0.81	-0.1
3,348,898	+		DZA65_RS15440	0.81	-0.1
3,348,898	+				-1.3
3,348,899	-		DZA65_RS15440	0.81	+0.7
3,348,899	-		DZA65_RS15440	0.81	+0.2
3,348,899	-		DZA65_RS15440	0.81	-0.2
3,348,899	-		DZA65_RS15440	0.81	+0.2
3,348,899	-		DZA65_RS15440	0.81	+0.3
3,348,901	-		DZA65_RS15440	0.81	-0.6
3,348,958	+		DZA65_RS15440	0.88	+1.0
3,348,958	+		DZA65_RS15440	0.88	+1.2
3,348,958	+		DZA65_RS15440	0.88	+0.7
3,348,958	+		DZA65_RS15440	0.88	+1.5
3,348,959	-		DZA65_RS15440	0.88	-0.3
3,348,961	+		DZA65_RS15440	0.88	-0.7
3,348,961	+		DZA65_RS15440	0.88	+0.5
3,348,961	+		DZA65_RS15440	0.88	-1.3
3,348,961	+		DZA65_RS15440	0.88	+0.0
3,348,961	+		DZA65_RS15440	0.88	-0.9
3,348,961	+		DZA65_RS15440	0.88	+0.3
3,348,962	-		DZA65_RS15440	0.88	-0.7
3,348,962	-		DZA65_RS15440	0.88	-0.1
3,348,962	-		DZA65_RS15440	0.88	+0.4
3,348,962	-		DZA65_RS15440	0.88	-1.8
3,348,962	-		DZA65_RS15440	0.88	+0.3
3,348,962	-		DZA65_RS15440	0.88	-0.1
3,348,962	-		DZA65_RS15440	0.88	-1.5
3,348,962	-		DZA65_RS15440	0.88	-2.0
3,348,962	-		DZA65_RS15440	0.88	-0.5
3,348,965	+		DZA65_RS15440	0.88	+0.1
3,348,965	+		DZA65_RS15440	0.88	-0.5
3,348,966	-		DZA65_RS15440	0.88	-0.0