Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15230

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS15215 and DZA65_RS15220 are separated by 1 nucleotidesDZA65_RS15220 and DZA65_RS15225 overlap by 11 nucleotidesDZA65_RS15225 and DZA65_RS15230 are separated by 7 nucleotidesDZA65_RS15230 and DZA65_RS15235 are separated by 13 nucleotidesDZA65_RS15235 and DZA65_RS15240 are separated by 15 nucleotides DZA65_RS15215: DZA65_RS15215 - hypothetical protein, at 3,305,617 to 3,305,808 _RS15215 DZA65_RS15220: DZA65_RS15220 - DUF3164 family protein, at 3,305,810 to 3,306,448 _RS15220 DZA65_RS15225: DZA65_RS15225 - hypothetical protein, at 3,306,438 to 3,306,635 _RS15225 DZA65_RS15230: DZA65_RS15230 - hypothetical protein, at 3,306,643 to 3,306,876 _RS15230 DZA65_RS15235: DZA65_RS15235 - AAA family ATPase, at 3,306,890 to 3,307,783 _RS15235 DZA65_RS15240: DZA65_RS15240 - DDE-type integrase/transposase/recombinase, at 3,307,799 to 3,309,826 _RS15240 Position (kb) 3306 3307Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3305.655 kb on - strand, within DZA65_RS15215at 3305.691 kb on + strand, within DZA65_RS15215at 3305.756 kb on + strand, within DZA65_RS15215at 3305.760 kb on + strand, within DZA65_RS15215at 3305.760 kb on + strand, within DZA65_RS15215at 3305.760 kb on + strand, within DZA65_RS15215at 3305.760 kb on + strand, within DZA65_RS15215at 3305.760 kb on + strand, within DZA65_RS15215at 3305.760 kb on + strand, within DZA65_RS15215at 3305.760 kb on + strand, within DZA65_RS15215at 3305.760 kb on + strand, within DZA65_RS15215at 3305.761 kb on - strand, within DZA65_RS15215at 3305.780 kb on + strand, within DZA65_RS15215at 3305.824 kb on + strandat 3305.871 kb on + strandat 3305.871 kb on + strandat 3305.871 kb on + strandat 3305.872 kb on - strandat 3305.883 kb on + strand, within DZA65_RS15220at 3305.883 kb on + strand, within DZA65_RS15220at 3305.884 kb on - strand, within DZA65_RS15220at 3305.893 kb on + strand, within DZA65_RS15220at 3305.956 kb on + strand, within DZA65_RS15220at 3305.956 kb on + strand, within DZA65_RS15220at 3305.956 kb on + strand, within DZA65_RS15220at 3305.960 kb on + strand, within DZA65_RS15220at 3305.960 kb on + strand, within DZA65_RS15220at 3305.960 kb on + strand, within DZA65_RS15220at 3305.960 kb on + strand, within DZA65_RS15220at 3305.961 kb on - strand, within DZA65_RS15220at 3305.961 kb on - strand, within DZA65_RS15220at 3306.097 kb on + strand, within DZA65_RS15220at 3306.156 kb on + strand, within DZA65_RS15220at 3306.168 kb on + strand, within DZA65_RS15220at 3306.168 kb on + strand, within DZA65_RS15220at 3306.168 kb on + strand, within DZA65_RS15220at 3306.168 kb on + strand, within DZA65_RS15220at 3306.169 kb on - strand, within DZA65_RS15220at 3306.174 kb on + strand, within DZA65_RS15220at 3306.174 kb on + strand, within DZA65_RS15220at 3306.174 kb on + strand, within DZA65_RS15220at 3306.175 kb on - strand, within DZA65_RS15220at 3306.175 kb on - strand, within DZA65_RS15220at 3306.217 kb on - strand, within DZA65_RS15220at 3306.217 kb on - strand, within DZA65_RS15220at 3306.271 kb on + strand, within DZA65_RS15220at 3306.271 kb on + strand, within DZA65_RS15220at 3306.272 kb on - strand, within DZA65_RS15220at 3306.355 kb on + strand, within DZA65_RS15220at 3306.378 kb on - strand, within DZA65_RS15220at 3306.433 kb on + strandat 3306.433 kb on + strandat 3306.434 kb on - strandat 3306.436 kb on + strandat 3306.436 kb on + strandat 3306.437 kb on - strandat 3306.437 kb on - strandat 3306.461 kb on + strand, within DZA65_RS15225at 3306.470 kb on + strand, within DZA65_RS15225at 3306.483 kb on + strand, within DZA65_RS15225at 3306.483 kb on + strand, within DZA65_RS15225at 3306.551 kb on + strand, within DZA65_RS15225at 3306.551 kb on + strand, within DZA65_RS15225at 3306.551 kb on + strand, within DZA65_RS15225at 3306.551 kb on + strand, within DZA65_RS15225at 3306.551 kb on + strand, within DZA65_RS15225at 3306.611 kb on + strand, within DZA65_RS15225at 3306.611 kb on + strand, within DZA65_RS15225at 3306.614 kb on + strand, within DZA65_RS15225at 3306.614 kb on + strand, within DZA65_RS15225at 3306.624 kb on + strandat 3306.624 kb on + strandat 3306.629 kb on + strandat 3306.629 kb on + strandat 3306.654 kb on + strandat 3306.697 kb on + strand, within DZA65_RS15230at 3306.844 kb on + strand, within DZA65_RS15230at 3306.876 kb on + strandat 3306.876 kb on + strandat 3306.883 kb on + strandat 3306.883 kb on + strandat 3306.895 kb on + strandat 3306.895 kb on + strandat 3306.895 kb on + strandat 3307.020 kb on + strand, within DZA65_RS15235at 3307.020 kb on + strand, within DZA65_RS15235at 3307.020 kb on + strand, within DZA65_RS15235at 3307.063 kb on + strandat 3307.063 kb on + strand, within DZA65_RS15235at 3307.137 kb on + strand, within DZA65_RS15235at 3307.147 kb on + strand, within DZA65_RS15235at 3307.147 kb on + strand, within DZA65_RS15235at 3307.147 kb on + strand, within DZA65_RS15235at 3307.147 kb on + strand, within DZA65_RS15235at 3307.147 kb on + strand, within DZA65_RS15235at 3307.147 kb on + strand, within DZA65_RS15235at 3307.147 kb on + strand, within DZA65_RS15235at 3307.149 kb on + strand, within DZA65_RS15235at 3307.318 kb on + strand, within DZA65_RS15235at 3307.318 kb on + strand, within DZA65_RS15235at 3307.342 kb on + strand, within DZA65_RS15235at 3307.494 kb on + strand, within DZA65_RS15235at 3307.496 kb on + strand, within DZA65_RS15235at 3307.496 kb on + strand, within DZA65_RS15235at 3307.496 kb on + strand, within DZA65_RS15235at 3307.496 kb on + strand, within DZA65_RS15235at 3307.496 kb on + strand, within DZA65_RS15235at 3307.572 kb on + strand, within DZA65_RS15235at 3307.582 kb on + strand, within DZA65_RS15235at 3307.663 kb on + strand, within DZA65_RS15235at 3307.665 kb on + strand, within DZA65_RS15235at 3307.665 kb on + strand, within DZA65_RS15235at 3307.705 kb on + strandat 3307.763 kb on + strandat 3307.771 kb on + strandat 3307.775 kb on + strandat 3307.775 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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3,305,655 - DZA65_RS15215 0.20 -1.0
3,305,691 + DZA65_RS15215 0.39 -0.4
3,305,756 + DZA65_RS15215 0.72 -0.6
3,305,760 + DZA65_RS15215 0.74 +0.1
3,305,760 + DZA65_RS15215 0.74 +0.3
3,305,760 + DZA65_RS15215 0.74 -0.9
3,305,760 + DZA65_RS15215 0.74 +0.8
3,305,760 + DZA65_RS15215 0.74 -1.7
3,305,760 + DZA65_RS15215 0.74 -1.0
3,305,760 + DZA65_RS15215 0.74 -0.5
3,305,760 + DZA65_RS15215 0.74 +0.7
3,305,761 - DZA65_RS15215 0.75 -0.3
3,305,780 + DZA65_RS15215 0.85 -0.4
3,305,824 + +0.3
3,305,871 + +1.1
3,305,871 + -0.1
3,305,871 + -0.7
3,305,872 - +0.9
3,305,883 + DZA65_RS15220 0.11 +1.0
3,305,883 + DZA65_RS15220 0.11 -0.1
3,305,884 - DZA65_RS15220 0.12 +0.3
3,305,893 + DZA65_RS15220 0.13 -0.0
3,305,956 + DZA65_RS15220 0.23 -0.0
3,305,956 + DZA65_RS15220 0.23 -1.3
3,305,956 + DZA65_RS15220 0.23 +0.9
3,305,960 + DZA65_RS15220 0.23 +0.5
3,305,960 + DZA65_RS15220 0.23 -0.0
3,305,960 + DZA65_RS15220 0.23 -1.0
3,305,960 + DZA65_RS15220 0.23 -0.5
3,305,961 - DZA65_RS15220 0.24 -0.7
3,305,961 - DZA65_RS15220 0.24 -0.7
3,306,097 + DZA65_RS15220 0.45 -0.8
3,306,156 + DZA65_RS15220 0.54 +0.5
3,306,168 + DZA65_RS15220 0.56 -0.6
3,306,168 + DZA65_RS15220 0.56 +0.2
3,306,168 + DZA65_RS15220 0.56 -0.3
3,306,168 + DZA65_RS15220 0.56 +0.1
3,306,169 - DZA65_RS15220 0.56 +1.3
3,306,174 + DZA65_RS15220 0.57 +1.3
3,306,174 + DZA65_RS15220 0.57 -0.1
3,306,174 + DZA65_RS15220 0.57 +0.6
3,306,175 - DZA65_RS15220 0.57 -1.3
3,306,175 - DZA65_RS15220 0.57 -0.1
3,306,217 - DZA65_RS15220 0.64 -1.5
3,306,217 - DZA65_RS15220 0.64 -0.4
3,306,271 + DZA65_RS15220 0.72 -0.9
3,306,271 + DZA65_RS15220 0.72 +0.8
3,306,272 - DZA65_RS15220 0.72 +0.1
3,306,355 + DZA65_RS15220 0.85 +0.4
3,306,378 - DZA65_RS15220 0.89 -0.1
3,306,433 + +2.6
3,306,433 + +0.2
3,306,434 - -0.9
3,306,436 + +0.3
3,306,436 + +0.3
3,306,437 - +0.4
3,306,437 - -1.7
3,306,461 + DZA65_RS15225 0.12 +0.0
3,306,470 + DZA65_RS15225 0.16 -0.4
3,306,483 + DZA65_RS15225 0.23 -1.7
3,306,483 + DZA65_RS15225 0.23 +0.3
3,306,551 + DZA65_RS15225 0.57 +0.3
3,306,551 + DZA65_RS15225 0.57 -0.9
3,306,551 + DZA65_RS15225 0.57 +1.3
3,306,551 + DZA65_RS15225 0.57 -0.1
3,306,551 + DZA65_RS15225 0.57 +0.1
3,306,611 + DZA65_RS15225 0.87 +1.3
3,306,611 + DZA65_RS15225 0.87 -0.7
3,306,614 + DZA65_RS15225 0.89 -0.3
3,306,614 + DZA65_RS15225 0.89 +0.1
3,306,624 + -2.0
3,306,624 + -0.7
3,306,629 + +0.5
3,306,629 + -1.7
3,306,654 + -0.7
3,306,697 + DZA65_RS15230 0.23 -0.3
3,306,844 + DZA65_RS15230 0.86 -2.5
3,306,876 + -0.7
3,306,876 + -0.9
3,306,883 + +0.3
3,306,883 + -0.2
3,306,895 + -1.2
3,306,895 + +0.3
3,306,895 + -0.3
3,307,020 + DZA65_RS15235 0.15 -3.2
3,307,020 + DZA65_RS15235 0.15 -2.5
3,307,020 + DZA65_RS15235 0.15 +0.3
3,307,063 + +2.1
3,307,063 + DZA65_RS15235 0.19 +0.2
3,307,137 + DZA65_RS15235 0.28 -0.7
3,307,147 + DZA65_RS15235 0.29 -0.5
3,307,147 + DZA65_RS15235 0.29 +0.8
3,307,147 + DZA65_RS15235 0.29 -0.6
3,307,147 + DZA65_RS15235 0.29 -2.2
3,307,147 + DZA65_RS15235 0.29 -0.2
3,307,147 + DZA65_RS15235 0.29 -0.1
3,307,147 + DZA65_RS15235 0.29 -0.4
3,307,149 + DZA65_RS15235 0.29 +0.6
3,307,318 + DZA65_RS15235 0.48 +0.1
3,307,318 + DZA65_RS15235 0.48 -1.3
3,307,342 + DZA65_RS15235 0.51 -0.5
3,307,494 + DZA65_RS15235 0.68 +0.9
3,307,496 + DZA65_RS15235 0.68 -0.5
3,307,496 + DZA65_RS15235 0.68 +0.2
3,307,496 + DZA65_RS15235 0.68 -1.0
3,307,496 + DZA65_RS15235 0.68 -0.7
3,307,496 + DZA65_RS15235 0.68 -1.0
3,307,572 + DZA65_RS15235 0.76 +0.8
3,307,582 + DZA65_RS15235 0.77 +0.1
3,307,663 + DZA65_RS15235 0.86 -3.3
3,307,665 + DZA65_RS15235 0.87 -0.7
3,307,665 + DZA65_RS15235 0.87 -0.9
3,307,705 + +0.5
3,307,763 + +0.1
3,307,771 + +1.8
3,307,775 + -0.1
3,307,775 + +0.8

Or see this region's nucleotide sequence