Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15045

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,281,192	+				-0.4
3,281,192	+				+0.7
3,281,192	+				-0.4
3,281,193	-				+0.8
3,281,193	-				+0.7
3,281,193	-				-0.5
3,281,193	-				+1.3
3,281,214	+				+0.0
3,281,214	+				+0.3
3,281,214	+				+0.1
3,281,215	-				+0.1
3,281,250	+		DZA65_RS15035	0.17	+1.0
3,281,251	-		DZA65_RS15035	0.17	+0.6
3,281,251	-		DZA65_RS15035	0.17	+0.5
3,281,296	+		DZA65_RS15035	0.30	-1.8
3,281,297	-		DZA65_RS15035	0.30	-1.2
3,281,348	+		DZA65_RS15035	0.45	-1.7
3,281,349	-		DZA65_RS15035	0.45	-0.5
3,281,364	+		DZA65_RS15035	0.50	-0.7
3,281,364	+		DZA65_RS15035	0.50	-0.5
3,281,365	-		DZA65_RS15035	0.50	-0.6
3,281,365	-		DZA65_RS15035	0.50	-1.7
3,281,365	-		DZA65_RS15035	0.50	+1.3
3,281,365	-		DZA65_RS15035	0.50	+2.0
3,281,367	-		DZA65_RS15035	0.51	+0.5
3,281,464	-		DZA65_RS15035	0.78	-0.5
3,281,465	+		DZA65_RS15035	0.79	-0.5
3,281,465	+		DZA65_RS15035	0.79	+0.4
3,281,465	+		DZA65_RS15035	0.79	-0.9
3,281,465	+		DZA65_RS15035	0.79	-3.4
3,281,465	+		DZA65_RS15035	0.79	+0.4
3,281,465	+		DZA65_RS15035	0.79	-0.7
3,281,465	+		DZA65_RS15035	0.79	-0.1
3,281,465	+		DZA65_RS15035	0.79	-0.2
3,281,465	+		DZA65_RS15035	0.79	+0.1
3,281,466	-		DZA65_RS15035	0.79	-0.1
3,281,466	-		DZA65_RS15035	0.79	-1.0
3,281,466	-		DZA65_RS15035	0.79	-0.1
3,281,466	-		DZA65_RS15035	0.79	-0.8
3,281,466	-		DZA65_RS15035	0.79	-0.5
3,281,466	-		DZA65_RS15035	0.79	-2.9
3,281,466	-		DZA65_RS15035	0.79	+0.5
3,281,475	+		DZA65_RS15035	0.82	+0.9
3,281,475	+		DZA65_RS15035	0.82	+1.8
3,281,475	+		DZA65_RS15035	0.82	+0.3
3,281,475	+		DZA65_RS15035	0.82	-0.3
3,281,475	+		DZA65_RS15035	0.82	-2.1
3,281,475	+		DZA65_RS15035	0.82	+0.3
3,281,475	+		DZA65_RS15035	0.82	+0.3
3,281,475	+		DZA65_RS15035	0.82	-1.1
3,281,476	-		DZA65_RS15035	0.82	-0.7
3,281,476	-		DZA65_RS15035	0.82	-0.3
3,281,476	-		DZA65_RS15035	0.82	-0.3
3,281,476	-		DZA65_RS15035	0.82	-0.7
3,281,476	-		DZA65_RS15035	0.82	+0.7
3,281,479	+		DZA65_RS15035	0.83	-0.7
3,281,479	+		DZA65_RS15035	0.83	-0.0
3,281,479	+		DZA65_RS15035	0.83	-1.3
3,281,480	-		DZA65_RS15035	0.83	+0.3
3,281,480	-		DZA65_RS15035	0.83	-1.2
3,281,480	-		DZA65_RS15035	0.83	-1.1
3,281,480	-		DZA65_RS15035	0.83	-0.2
3,281,480	-		DZA65_RS15035	0.83	-0.5
3,281,484	+		DZA65_RS15035	0.84	+1.0
3,281,484	+		DZA65_RS15035	0.84	+0.4
3,281,484	+		DZA65_RS15035	0.84	-0.2
3,281,484	+		DZA65_RS15035	0.84	-1.1
3,281,484	+		DZA65_RS15035	0.84	-1.5
3,281,484	+		DZA65_RS15035	0.84	+0.0
3,281,485	-		DZA65_RS15035	0.84	+1.8
3,281,485	-		DZA65_RS15035	0.84	-0.3
3,281,485	-		DZA65_RS15035	0.84	-0.6
3,281,485	-		DZA65_RS15035	0.84	-1.5
3,281,502	+		DZA65_RS15035	0.89	+0.7
3,281,504	+				+0.6
3,281,504	+				+0.3
3,281,505	-				+0.3
3,281,527	+				+0.3
3,281,527	+				+1.5
3,281,528	-				+1.3
3,281,532	+				-0.5
3,281,593	+				-0.4
3,281,596	+				+0.0
3,281,596	+				-0.3
3,281,596	+				+0.7
3,281,596	+				+0.4
3,281,596	+				-0.1
3,281,596	+				+0.0
3,281,596	+				+1.8
3,281,596	+				-1.3
3,281,597	-				+0.8
3,281,597	-				+1.1
3,281,597	-				+0.7
3,281,597	-				+0.8
3,281,597	-				-1.7
3,281,597	-				+0.2
3,281,597	-				-0.7
3,281,625	-				-0.9
3,281,625	-				-0.3
3,281,625	-				-0.2
3,281,625	-				+2.1
3,281,660	-		DZA65_RS15040	0.12	+0.6
3,281,733	-		DZA65_RS15040	0.25	+2.1
3,281,762	+		DZA65_RS15040	0.30	-2.3
3,281,762	+		DZA65_RS15040	0.30	+1.5
3,281,765	-		DZA65_RS15040	0.30	-0.2
3,281,765	-		DZA65_RS15040	0.30	+0.4
3,281,785	+		DZA65_RS15040	0.34	-0.9
3,281,808	+		DZA65_RS15040	0.38	+0.4
3,281,829	-		DZA65_RS15040	0.42	-0.0
3,281,849	+		DZA65_RS15040	0.45	-1.0
3,281,849	+		DZA65_RS15040	0.45	+0.7
3,281,850	-		DZA65_RS15040	0.45	-1.2
3,281,851	+		DZA65_RS15040	0.46	+0.2
3,281,852	-		DZA65_RS15040	0.46	+0.1
3,281,852	-		DZA65_RS15040	0.46	+0.2
3,281,891	-		DZA65_RS15040	0.53	+0.3
3,281,992	+		DZA65_RS15040	0.71	+0.2
3,281,993	-		DZA65_RS15040	0.71	-0.7
3,281,993	-		DZA65_RS15040	0.71	-1.2
3,282,095	+		DZA65_RS15040	0.89	+0.3
3,282,095	+		DZA65_RS15040	0.89	-0.3
3,282,096	-		DZA65_RS15040	0.89	-0.7
3,282,146	+				-1.7
3,282,147	-				-0.3
3,282,244	-				+0.5
3,282,244	-				-0.3
3,282,244	-				-1.0
3,282,244	-				+0.3
3,282,250	+				+1.8
3,282,250	+				+0.4
3,282,251	-				-1.7
3,282,339	+		DZA65_RS15045	0.16	-0.5
3,282,339	+		DZA65_RS15045	0.16	+1.8
3,282,340	-		DZA65_RS15045	0.16	+0.5
3,282,340	-		DZA65_RS15045	0.16	-0.2
3,282,348	+		DZA65_RS15045	0.17	-0.1
3,282,348	+		DZA65_RS15045	0.17	+0.8
3,282,349	-		DZA65_RS15045	0.17	-0.3
3,282,349	-		DZA65_RS15045	0.17	+2.1
3,282,416	+		DZA65_RS15045	0.22	-0.3
3,282,417	-		DZA65_RS15045	0.22	+0.1
3,282,458	+		DZA65_RS15045	0.26	+0.4
3,282,498	+		DZA65_RS15045	0.29	+0.3
3,282,499	-		DZA65_RS15045	0.29	-1.4
3,282,499	-				+0.7
3,282,533	+		DZA65_RS15045	0.32	-0.2
3,282,533	+		DZA65_RS15045	0.32	+0.5
3,282,533	+		DZA65_RS15045	0.32	+0.5
3,282,534	-		DZA65_RS15045	0.32	-0.0
3,282,534	-		DZA65_RS15045	0.32	-0.4
3,282,534	-		DZA65_RS15045	0.32	+0.5
3,282,534	-		DZA65_RS15045	0.32	+0.4
3,282,534	-		DZA65_RS15045	0.32	+0.7
3,282,581	+		DZA65_RS15045	0.36	-0.3
3,282,581	+		DZA65_RS15045	0.36	-0.4
3,282,581	+		DZA65_RS15045	0.36	-1.3
3,282,581	+		DZA65_RS15045	0.36	+0.1
3,282,581	+		DZA65_RS15045	0.36	+1.2
3,282,581	+		DZA65_RS15045	0.36	+0.9
3,282,581	+		DZA65_RS15045	0.36	+1.0
3,282,581	+		DZA65_RS15045	0.36	+0.4
3,282,581	+		DZA65_RS15045	0.36	-1.1
3,282,581	+		DZA65_RS15045	0.36	-0.7
3,282,581	+		DZA65_RS15045	0.36	-0.0
3,282,581	+		DZA65_RS15045	0.36	+0.4
3,282,581	+		DZA65_RS15045	0.36	+1.3
3,282,582	-		DZA65_RS15045	0.36	+0.3
3,282,582	-		DZA65_RS15045	0.36	-0.7
3,282,582	-		DZA65_RS15045	0.36	+0.8
3,282,582	-		DZA65_RS15045	0.36	+0.2
3,282,582	-		DZA65_RS15045	0.36	-0.8
3,282,582	-		DZA65_RS15045	0.36	-1.7
3,282,716	-		DZA65_RS15045	0.47	+0.1
3,282,716	-		DZA65_RS15045	0.47	+1.3
3,282,716	-		DZA65_RS15045	0.47	-1.2
3,282,718	+		DZA65_RS15045	0.47	+0.1
3,282,718	+		DZA65_RS15045	0.47	-1.2
3,282,718	+		DZA65_RS15045	0.47	+1.5
3,282,718	+		DZA65_RS15045	0.47	-0.7
3,282,718	+		DZA65_RS15045	0.47	-0.7
3,282,719	-		DZA65_RS15045	0.47	+0.1
3,282,719	-		DZA65_RS15045	0.47	-0.4
3,282,719	-		DZA65_RS15045	0.47	-2.1
3,282,777	+		DZA65_RS15045	0.52	-0.5
3,282,778	-		DZA65_RS15045	0.52	-1.1
3,282,943	+		DZA65_RS15045	0.65	-0.7
3,282,943	+		DZA65_RS15045	0.65	+0.6
3,282,944	-		DZA65_RS15045	0.65	-0.2
3,282,944	-		DZA65_RS15045	0.65	-1.3
3,282,949	-		DZA65_RS15045	0.66	-0.9
3,282,949	-		DZA65_RS15045	0.66	+1.3
3,283,125	+		DZA65_RS15045	0.80	-1.5
3,283,126	-		DZA65_RS15045	0.80	+1.3
3,283,126	-		DZA65_RS15045	0.80	-0.1
3,283,168	+		DZA65_RS15045	0.84	+2.8
3,283,168	+		DZA65_RS15045	0.84	-2.9
3,283,168	+		DZA65_RS15045	0.84	-0.1
3,283,168	+		DZA65_RS15045	0.84	-0.4
3,283,168	+		DZA65_RS15045	0.84	-1.3
3,283,168	+		DZA65_RS15045	0.84	-0.8
3,283,168	+		DZA65_RS15045	0.84	+0.5
3,283,168	+		DZA65_RS15045	0.84	+0.3
3,283,168	+		DZA65_RS15045	0.84	+0.9
3,283,169	-		DZA65_RS15045	0.84	-1.2
3,283,169	-		DZA65_RS15045	0.84	+1.6
3,283,344	+				-0.2
3,283,344	+				-0.3
3,283,344	+				-0.6
3,283,344	+				+1.6
3,283,344	+				+0.5
3,283,344	+				-2.3
3,283,344	+				+2.0
3,283,344	+				+0.5
3,283,345	-				-1.3
3,283,345	-				-1.3
3,283,345	-				+0.7
3,283,345	-				+0.2
3,283,345	-				-1.1
3,283,362	+				-0.7
3,283,363	-				+1.3
3,283,444	+				-1.9
3,283,444	+				-1.7
3,283,444	+				-3.1
3,283,444	+				-1.3
3,283,445	-				-0.7
3,283,445	-				-1.0
3,283,446	+				-0.3
3,283,447	-				+0.2
3,283,447	-				+0.1
3,283,456	-				-0.1
3,283,575	-		DZA65_RS15050	0.16	+0.4
3,283,597	-		DZA65_RS15050	0.18	+0.5
3,283,733	+		DZA65_RS15050	0.28	-0.5
3,283,734	-				+1.8
3,283,734	-		DZA65_RS15050	0.28	-0.4
3,283,734	-		DZA65_RS15050	0.28	-0.3
3,283,744	+		DZA65_RS15050	0.29	+0.8
3,283,744	+		DZA65_RS15050	0.29	-0.5
3,283,744	+		DZA65_RS15050	0.29	+0.8
3,283,744	+		DZA65_RS15050	0.29	+1.1
3,283,744	+		DZA65_RS15050	0.29	+0.0
3,283,745	-		DZA65_RS15050	0.29	-0.1
3,283,745	-		DZA65_RS15050	0.29	-0.1
3,283,745	-		DZA65_RS15050	0.29	-0.5
3,283,745	-		DZA65_RS15050	0.29	-0.7
3,283,750	+		DZA65_RS15050	0.29	-1.5
3,283,750	+		DZA65_RS15050	0.29	+0.3
3,283,750	+		DZA65_RS15050	0.29	-1.0
3,283,750	+		DZA65_RS15050	0.29	-0.4
3,283,751	-		DZA65_RS15050	0.29	+0.8
3,283,751	-		DZA65_RS15050	0.29	+0.5
3,283,751	-		DZA65_RS15050	0.29	+0.9
3,283,751	-		DZA65_RS15050	0.29	-2.1
3,283,751	-		DZA65_RS15050	0.29	-1.0
3,283,751	-		DZA65_RS15050	0.29	-0.7
3,283,817	+		DZA65_RS15050	0.34	-1.6
3,283,818	-		DZA65_RS15050	0.34	+1.3
3,283,818	-		DZA65_RS15050	0.34	-0.2
3,283,829	-		DZA65_RS15050	0.35	-0.2
3,283,856	-		DZA65_RS15050	0.37	+0.5
3,283,888	+		DZA65_RS15050	0.39	-0.2
3,283,888	+		DZA65_RS15050	0.39	-1.1
3,283,888	+		DZA65_RS15050	0.39	+0.7
3,283,888	+		DZA65_RS15050	0.39	+0.3
3,283,889	-		DZA65_RS15050	0.39	-0.0
3,283,889	-		DZA65_RS15050	0.39	+2.6
3,283,889	-		DZA65_RS15050	0.39	+0.8
3,283,889	-		DZA65_RS15050	0.39	+2.2
3,283,889	-		DZA65_RS15050	0.39	-0.6
3,283,931	-		DZA65_RS15050	0.42	+1.0
3,283,969	+		DZA65_RS15050	0.45	-0.7
3,283,969	+		DZA65_RS15050	0.45	+0.1
3,283,969	+		DZA65_RS15050	0.45	+2.4
3,283,970	-		DZA65_RS15050	0.45	+1.4
3,283,970	-		DZA65_RS15050	0.45	+0.9
3,283,971	+		DZA65_RS15050	0.45	+0.3
3,283,972	-		DZA65_RS15050	0.45	+0.1
3,283,972	-		DZA65_RS15050	0.45	-0.1
3,283,972	-		DZA65_RS15050	0.45	+2.4
3,284,019	+		DZA65_RS15050	0.49	-0.0
3,284,019	+		DZA65_RS15050	0.49	-1.7
3,284,019	+		DZA65_RS15050	0.49	+0.3
3,284,020	-		DZA65_RS15050	0.49	+0.9
3,284,020	-		DZA65_RS15050	0.49	+0.5
3,284,020	-		DZA65_RS15050	0.49	-0.8
3,284,020	-		DZA65_RS15050	0.49	-0.2
3,284,020	-		DZA65_RS15050	0.49	+0.5
3,284,020	-		DZA65_RS15050	0.49	+0.5
3,284,020	-		DZA65_RS15050	0.49	-3.1
3,284,020	-		DZA65_RS15050	0.49	+0.0
3,284,020	-		DZA65_RS15050	0.49	+2.0
3,284,020	-		DZA65_RS15050	0.49	-1.1
3,284,020	-		DZA65_RS15050	0.49	+2.1
3,284,031	+		DZA65_RS15050	0.50	+0.3
3,284,031	+				+0.8
3,284,031	+		DZA65_RS15050	0.50	-0.5
3,284,031	+		DZA65_RS15050	0.50	-0.3
3,284,031	+		DZA65_RS15050	0.50	-0.3
3,284,032	-		DZA65_RS15050	0.50	-1.2
3,284,032	-				+1.6
3,284,032	-		DZA65_RS15050	0.50	-0.7
3,284,032	-		DZA65_RS15050	0.50	-0.0
3,284,099	-		DZA65_RS15050	0.55	+3.1
3,284,099	-		DZA65_RS15050	0.55	+1.0
3,284,119	+		DZA65_RS15050	0.56	+0.1
3,284,131	+		DZA65_RS15050	0.57	-0.4
3,284,131	+		DZA65_RS15050	0.57	+0.1
3,284,131	+		DZA65_RS15050	0.57	-0.4
3,284,131	+		DZA65_RS15050	0.57	+0.3
3,284,131	+		DZA65_RS15050	0.57	+0.2
3,284,131	+		DZA65_RS15050	0.57	-0.2
3,284,131	+		DZA65_RS15050	0.57	-1.1
3,284,131	+		DZA65_RS15050	0.57	+0.3
3,284,131	+		DZA65_RS15050	0.57	-0.1
3,284,131	+		DZA65_RS15050	0.57	-0.2
3,284,131	+		DZA65_RS15050	0.57	+0.4
3,284,131	+		DZA65_RS15050	0.57	-1.2
3,284,132	-		DZA65_RS15050	0.57	-0.4
3,284,132	-		DZA65_RS15050	0.57	-1.0
3,284,132	-		DZA65_RS15050	0.57	-0.7
3,284,132	-		DZA65_RS15050	0.57	+0.5
3,284,180	+		DZA65_RS15050	0.61	+0.3
3,284,180	+		DZA65_RS15050	0.61	-1.3
3,284,180	+		DZA65_RS15050	0.61	-0.7
3,284,181	-		DZA65_RS15050	0.61	+1.2
3,284,181	-		DZA65_RS15050	0.61	+0.5
3,284,296	+		DZA65_RS15050	0.69	+1.5
3,284,296	+		DZA65_RS15050	0.69	-0.5
3,284,297	-		DZA65_RS15050	0.69	+0.5