Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15035

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,280,201	-				+0.4
3,280,201	-				-1.1
3,280,219	+				+0.3
3,280,219	+				+0.4
3,280,220	-				-1.5
3,280,221	+				-0.2
3,280,253	-		DZA65_RS15030	0.12	-0.5
3,280,278	+		DZA65_RS15030	0.14	+1.5
3,280,311	-		DZA65_RS15030	0.17	-0.1
3,280,311	-		DZA65_RS15030	0.17	+1.4
3,280,332	+		DZA65_RS15030	0.19	-2.7
3,280,386	+		DZA65_RS15030	0.24	+0.4
3,280,386	+		DZA65_RS15030	0.24	-0.7
3,280,387	-		DZA65_RS15030	0.24	-3.1
3,280,387	-		DZA65_RS15030	0.24	-0.1
3,280,412	-				+1.1
3,280,414	+		DZA65_RS15030	0.27	-0.2
3,280,414	+		DZA65_RS15030	0.27	-0.8
3,280,414	+		DZA65_RS15030	0.27	+0.6
3,280,415	-		DZA65_RS15030	0.27	-2.3
3,280,415	-		DZA65_RS15030	0.27	+0.1
3,280,415	-		DZA65_RS15030	0.27	-0.1
3,280,444	+		DZA65_RS15030	0.30	+0.1
3,280,444	+		DZA65_RS15030	0.30	+1.4
3,280,444	+		DZA65_RS15030	0.30	+0.3
3,280,445	-		DZA65_RS15030	0.30	-1.0
3,280,445	-		DZA65_RS15030	0.30	-3.2
3,280,445	-		DZA65_RS15030	0.30	-1.1
3,280,445	-		DZA65_RS15030	0.30	+0.1
3,280,445	-		DZA65_RS15030	0.30	-1.1
3,280,445	-		DZA65_RS15030	0.30	+0.3
3,280,445	-		DZA65_RS15030	0.30	+0.9
3,280,456	-		DZA65_RS15030	0.31	-0.0
3,280,457	+		DZA65_RS15030	0.31	-1.2
3,280,457	+		DZA65_RS15030	0.31	-0.2
3,280,457	+		DZA65_RS15030	0.31	+0.4
3,280,457	+		DZA65_RS15030	0.31	+1.8
3,280,458	-		DZA65_RS15030	0.31	+0.2
3,280,458	-		DZA65_RS15030	0.31	+0.4
3,280,458	-		DZA65_RS15030	0.31	+0.8
3,280,458	-		DZA65_RS15030	0.31	+0.6
3,280,458	-		DZA65_RS15030	0.31	+0.4
3,280,458	-		DZA65_RS15030	0.31	-3.1
3,280,458	-		DZA65_RS15030	0.31	+0.8
3,280,458	-		DZA65_RS15030	0.31	+1.0
3,280,458	-		DZA65_RS15030	0.31	+1.1
3,280,458	-		DZA65_RS15030	0.31	-0.1
3,280,476	+		DZA65_RS15030	0.33	+1.3
3,280,476	+		DZA65_RS15030	0.33	-0.6
3,280,509	+		DZA65_RS15030	0.36	+1.3
3,280,509	+		DZA65_RS15030	0.36	-2.1
3,280,509	+		DZA65_RS15030	0.36	-0.5
3,280,509	+		DZA65_RS15030	0.36	+1.2
3,280,510	-		DZA65_RS15030	0.36	-0.1
3,280,510	-		DZA65_RS15030	0.36	+0.5
3,280,510	-		DZA65_RS15030	0.36	-1.1
3,280,510	-		DZA65_RS15030	0.36	-2.1
3,280,556	+		DZA65_RS15030	0.40	+0.3
3,280,556	+		DZA65_RS15030	0.40	+0.4
3,280,557	-		DZA65_RS15030	0.40	-0.0
3,280,557	-		DZA65_RS15030	0.40	+0.5
3,280,557	-		DZA65_RS15030	0.40	+1.0
3,280,604	+		DZA65_RS15030	0.45	+0.8
3,280,604	+		DZA65_RS15030	0.45	-1.9
3,280,604	+				+0.3
3,280,605	-		DZA65_RS15030	0.45	+0.5
3,280,605	-		DZA65_RS15030	0.45	-0.5
3,280,605	-		DZA65_RS15030	0.45	+0.6
3,280,605	-		DZA65_RS15030	0.45	-2.7
3,280,605	-		DZA65_RS15030	0.45	-0.0
3,280,605	-		DZA65_RS15030	0.45	+0.4
3,280,608	+		DZA65_RS15030	0.45	+0.5
3,280,608	+		DZA65_RS15030	0.45	-1.3
3,280,608	+		DZA65_RS15030	0.45	+0.7
3,280,609	-		DZA65_RS15030	0.45	+0.6
3,280,740	+		DZA65_RS15030	0.58	+0.4
3,280,740	+		DZA65_RS15030	0.58	-0.7
3,280,740	+		DZA65_RS15030	0.58	+0.9
3,280,741	-		DZA65_RS15030	0.58	+0.5
3,280,741	-		DZA65_RS15030	0.58	+0.8
3,280,741	-		DZA65_RS15030	0.58	+0.3
3,280,741	-		DZA65_RS15030	0.58	-0.7
3,280,741	-		DZA65_RS15030	0.58	-0.3
3,280,753	-		DZA65_RS15030	0.59	-0.5
3,280,815	+		DZA65_RS15030	0.65	+1.0
3,280,815	+		DZA65_RS15030	0.65	+0.5
3,280,815	+		DZA65_RS15030	0.65	-0.0
3,280,824	+		DZA65_RS15030	0.65	-0.2
3,280,828	+		DZA65_RS15030	0.66	+0.3
3,280,828	+		DZA65_RS15030	0.66	-0.5
3,280,828	+		DZA65_RS15030	0.66	+0.3
3,280,828	+		DZA65_RS15030	0.66	-1.0
3,280,828	+		DZA65_RS15030	0.66	+0.7
3,280,828	+		DZA65_RS15030	0.66	-0.2
3,280,828	+		DZA65_RS15030	0.66	+0.3
3,280,829	-		DZA65_RS15030	0.66	-0.9
3,280,829	-		DZA65_RS15030	0.66	+0.7
3,280,829	-		DZA65_RS15030	0.66	-2.5
3,280,829	-		DZA65_RS15030	0.66	-1.1
3,280,829	-				-0.3
3,280,829	-		DZA65_RS15030	0.66	-0.2
3,280,829	-		DZA65_RS15030	0.66	+0.4
3,280,829	-		DZA65_RS15030	0.66	+0.3
3,280,829	-		DZA65_RS15030	0.66	+0.8
3,280,829	-		DZA65_RS15030	0.66	+1.6
3,280,851	+		DZA65_RS15030	0.68	-2.5
3,280,851	+		DZA65_RS15030	0.68	+1.1
3,280,851	+		DZA65_RS15030	0.68	+0.1
3,280,851	+		DZA65_RS15030	0.68	-1.5
3,280,851	+		DZA65_RS15030	0.68	-0.0
3,280,851	+		DZA65_RS15030	0.68	-0.3
3,280,852	-		DZA65_RS15030	0.68	-0.4
3,280,852	-		DZA65_RS15030	0.68	+0.3
3,280,852	-		DZA65_RS15030	0.68	-0.5
3,280,852	-		DZA65_RS15030	0.68	+0.1
3,280,853	+		DZA65_RS15030	0.68	-1.1
3,280,854	-		DZA65_RS15030	0.68	-0.9
3,280,854	-		DZA65_RS15030	0.68	+0.6
3,280,957	+		DZA65_RS15030	0.78	-1.2
3,280,958	-		DZA65_RS15030	0.78	-1.0
3,280,958	-		DZA65_RS15030	0.78	-0.3
3,280,959	+		DZA65_RS15030	0.78	-0.2
3,280,959	+		DZA65_RS15030	0.78	-1.0
3,280,960	-		DZA65_RS15030	0.78	-0.7
3,281,045	+		DZA65_RS15030	0.86	+0.7
3,281,046	-		DZA65_RS15030	0.86	+0.6
3,281,046	-		DZA65_RS15030	0.86	+1.8
3,281,047	+		DZA65_RS15030	0.86	+0.4
3,281,047	+		DZA65_RS15030	0.86	-0.2
3,281,047	+		DZA65_RS15030	0.86	+0.3
3,281,047	+		DZA65_RS15030	0.86	-0.7
3,281,047	+		DZA65_RS15030	0.86	+1.1
3,281,047	+		DZA65_RS15030	0.86	+2.0
3,281,047	+		DZA65_RS15030	0.86	+0.1
3,281,048	-		DZA65_RS15030	0.87	-1.1
3,281,048	-		DZA65_RS15030	0.87	-0.2
3,281,048	-		DZA65_RS15030	0.87	-0.7
3,281,048	-		DZA65_RS15030	0.87	+0.5
3,281,048	-		DZA65_RS15030	0.87	-0.1
3,281,048	-		DZA65_RS15030	0.87	-0.2
3,281,048	-		DZA65_RS15030	0.87	+0.6
3,281,048	-		DZA65_RS15030	0.87	-0.0
3,281,048	-		DZA65_RS15030	0.87	+1.1
3,281,048	-		DZA65_RS15030	0.87	-0.3
3,281,048	-		DZA65_RS15030	0.87	+0.3
3,281,048	-		DZA65_RS15030	0.87	-0.7
3,281,057	-		DZA65_RS15030	0.87	-0.5
3,281,058	+		DZA65_RS15030	0.87	+0.7
3,281,058	+		DZA65_RS15030	0.87	-1.3
3,281,059	-		DZA65_RS15030	0.88	-0.5
3,281,087	+				-1.1
3,281,088	-				-0.2
3,281,088	-				-0.3
3,281,088	-				-2.1
3,281,192	+				-0.4
3,281,192	+				+0.7
3,281,192	+				-0.4
3,281,193	-				+0.8
3,281,193	-				+0.7
3,281,193	-				-0.5
3,281,193	-				+1.3
3,281,214	+				+0.0
3,281,214	+				+0.3
3,281,214	+				+0.1
3,281,215	-				+0.1
3,281,250	+		DZA65_RS15035	0.17	+1.0
3,281,251	-		DZA65_RS15035	0.17	+0.6
3,281,251	-		DZA65_RS15035	0.17	+0.5
3,281,296	+		DZA65_RS15035	0.30	-1.8
3,281,297	-		DZA65_RS15035	0.30	-1.2
3,281,348	+		DZA65_RS15035	0.45	-1.7
3,281,349	-		DZA65_RS15035	0.45	-0.5
3,281,364	+		DZA65_RS15035	0.50	-0.7
3,281,364	+		DZA65_RS15035	0.50	-0.5
3,281,365	-		DZA65_RS15035	0.50	-0.6
3,281,365	-		DZA65_RS15035	0.50	-1.7
3,281,365	-		DZA65_RS15035	0.50	+1.3
3,281,365	-		DZA65_RS15035	0.50	+2.0
3,281,367	-		DZA65_RS15035	0.51	+0.5
3,281,464	-		DZA65_RS15035	0.78	-0.5
3,281,465	+		DZA65_RS15035	0.79	-0.5
3,281,465	+		DZA65_RS15035	0.79	+0.4
3,281,465	+		DZA65_RS15035	0.79	-0.9
3,281,465	+		DZA65_RS15035	0.79	-3.4
3,281,465	+		DZA65_RS15035	0.79	+0.4
3,281,465	+		DZA65_RS15035	0.79	-0.7
3,281,465	+		DZA65_RS15035	0.79	-0.1
3,281,465	+		DZA65_RS15035	0.79	-0.2
3,281,465	+		DZA65_RS15035	0.79	+0.1
3,281,466	-		DZA65_RS15035	0.79	-0.1
3,281,466	-		DZA65_RS15035	0.79	-1.0
3,281,466	-		DZA65_RS15035	0.79	-0.1
3,281,466	-		DZA65_RS15035	0.79	-0.8
3,281,466	-		DZA65_RS15035	0.79	-0.5
3,281,466	-		DZA65_RS15035	0.79	-2.9
3,281,466	-		DZA65_RS15035	0.79	+0.5
3,281,475	+		DZA65_RS15035	0.82	+0.9
3,281,475	+		DZA65_RS15035	0.82	+1.8
3,281,475	+		DZA65_RS15035	0.82	+0.3
3,281,475	+		DZA65_RS15035	0.82	-0.3
3,281,475	+		DZA65_RS15035	0.82	-2.1
3,281,475	+		DZA65_RS15035	0.82	+0.3
3,281,475	+		DZA65_RS15035	0.82	+0.3
3,281,475	+		DZA65_RS15035	0.82	-1.1
3,281,476	-		DZA65_RS15035	0.82	-0.7
3,281,476	-		DZA65_RS15035	0.82	-0.3
3,281,476	-		DZA65_RS15035	0.82	-0.3
3,281,476	-		DZA65_RS15035	0.82	-0.7
3,281,476	-		DZA65_RS15035	0.82	+0.7
3,281,479	+		DZA65_RS15035	0.83	-0.7
3,281,479	+		DZA65_RS15035	0.83	-0.0
3,281,479	+		DZA65_RS15035	0.83	-1.3
3,281,480	-		DZA65_RS15035	0.83	+0.3
3,281,480	-		DZA65_RS15035	0.83	-1.2
3,281,480	-		DZA65_RS15035	0.83	-1.1
3,281,480	-		DZA65_RS15035	0.83	-0.2
3,281,480	-		DZA65_RS15035	0.83	-0.5
3,281,484	+		DZA65_RS15035	0.84	+1.0
3,281,484	+		DZA65_RS15035	0.84	+0.4
3,281,484	+		DZA65_RS15035	0.84	-0.2
3,281,484	+		DZA65_RS15035	0.84	-1.1
3,281,484	+		DZA65_RS15035	0.84	-1.5
3,281,484	+		DZA65_RS15035	0.84	+0.0
3,281,485	-		DZA65_RS15035	0.84	+1.8
3,281,485	-		DZA65_RS15035	0.84	-0.3
3,281,485	-		DZA65_RS15035	0.84	-0.6
3,281,485	-		DZA65_RS15035	0.84	-1.5
3,281,502	+		DZA65_RS15035	0.89	+0.7
3,281,504	+				+0.6
3,281,504	+				+0.3
3,281,505	-				+0.3
3,281,527	+				+0.3
3,281,527	+				+1.5
3,281,528	-				+1.3
3,281,532	+				-0.5
3,281,593	+				-0.4
3,281,596	+				+0.0
3,281,596	+				-0.3
3,281,596	+				+0.7
3,281,596	+				+0.4
3,281,596	+				-0.1
3,281,596	+				+0.0
3,281,596	+				+1.8
3,281,596	+				-1.3
3,281,597	-				+0.8
3,281,597	-				+1.1
3,281,597	-				+0.7
3,281,597	-				+0.8
3,281,597	-				-1.7
3,281,597	-				+0.2
3,281,597	-				-0.7
3,281,625	-				-0.9
3,281,625	-				-0.3
3,281,625	-				-0.2
3,281,625	-				+2.1
3,281,660	-		DZA65_RS15040	0.12	+0.6
3,281,733	-		DZA65_RS15040	0.25	+2.1
3,281,762	+		DZA65_RS15040	0.30	-2.3
3,281,762	+		DZA65_RS15040	0.30	+1.5
3,281,765	-		DZA65_RS15040	0.30	-0.2
3,281,765	-		DZA65_RS15040	0.30	+0.4
3,281,785	+		DZA65_RS15040	0.34	-0.9
3,281,808	+		DZA65_RS15040	0.38	+0.4
3,281,829	-		DZA65_RS15040	0.42	-0.0
3,281,849	+		DZA65_RS15040	0.45	-1.0
3,281,849	+		DZA65_RS15040	0.45	+0.7
3,281,850	-		DZA65_RS15040	0.45	-1.2
3,281,851	+		DZA65_RS15040	0.46	+0.2
3,281,852	-		DZA65_RS15040	0.46	+0.1
3,281,852	-		DZA65_RS15040	0.46	+0.2
3,281,891	-		DZA65_RS15040	0.53	+0.3
3,281,992	+		DZA65_RS15040	0.71	+0.2
3,281,993	-		DZA65_RS15040	0.71	-0.7
3,281,993	-		DZA65_RS15040	0.71	-1.2
3,282,095	+		DZA65_RS15040	0.89	+0.3
3,282,095	+		DZA65_RS15040	0.89	-0.3
3,282,096	-		DZA65_RS15040	0.89	-0.7
3,282,146	+				-1.7
3,282,147	-				-0.3
3,282,244	-				+0.5
3,282,244	-				-0.3
3,282,244	-				-1.0
3,282,244	-				+0.3
3,282,250	+				+1.8
3,282,250	+				+0.4
3,282,251	-				-1.7
3,282,339	+		DZA65_RS15045	0.16	-0.5
3,282,339	+		DZA65_RS15045	0.16	+1.8
3,282,340	-		DZA65_RS15045	0.16	+0.5
3,282,340	-		DZA65_RS15045	0.16	-0.2
3,282,348	+		DZA65_RS15045	0.17	-0.1
3,282,348	+		DZA65_RS15045	0.17	+0.8
3,282,349	-		DZA65_RS15045	0.17	-0.3
3,282,349	-		DZA65_RS15045	0.17	+2.1
3,282,416	+		DZA65_RS15045	0.22	-0.3
3,282,417	-		DZA65_RS15045	0.22	+0.1
3,282,458	+		DZA65_RS15045	0.26	+0.4
3,282,498	+		DZA65_RS15045	0.29	+0.3
3,282,499	-		DZA65_RS15045	0.29	-1.4
3,282,499	-				+0.7
3,282,533	+		DZA65_RS15045	0.32	-0.2
3,282,533	+		DZA65_RS15045	0.32	+0.5
3,282,533	+		DZA65_RS15045	0.32	+0.5
3,282,534	-		DZA65_RS15045	0.32	-0.0
3,282,534	-		DZA65_RS15045	0.32	-0.4
3,282,534	-		DZA65_RS15045	0.32	+0.5
3,282,534	-		DZA65_RS15045	0.32	+0.4
3,282,534	-		DZA65_RS15045	0.32	+0.7