Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14520

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,161,324	+		DZA65_RS14510	0.44	-0.1
3,161,344	-		DZA65_RS14510	0.46	-1.3
3,161,518	-		DZA65_RS14510	0.61	+0.2
3,161,519	+		DZA65_RS14510	0.62	+0.6
3,161,520	-		DZA65_RS14510	0.62	+0.4
3,161,528	+		DZA65_RS14510	0.62	-1.6
3,161,598	-		DZA65_RS14510	0.69	+0.2
3,161,690	+		DZA65_RS14510	0.77	-2.5
3,161,691	-		DZA65_RS14510	0.77	+0.1
3,161,691	-		DZA65_RS14510	0.77	-0.2
3,161,691	-		DZA65_RS14510	0.77	-1.0
3,161,764	-		DZA65_RS14510	0.83	-1.0
3,161,789	-		DZA65_RS14510	0.85	+1.5
3,161,981	-				-1.0
3,161,985	-				-1.0
3,162,099	-		DZA65_RS14515	0.32	-0.1
3,162,100	+				+0.6
3,162,101	-		DZA65_RS14515	0.32	+0.7
3,162,101	-		DZA65_RS14515	0.32	-0.4
3,162,140	-		DZA65_RS14515	0.49	-0.0
3,162,276	+				-1.6
3,162,277	-				-2.3
3,162,277	-				-1.1
3,162,277	-				-1.0
3,162,298	+				-3.3
3,162,332	+				-1.0
3,162,382	-				-0.2
3,162,382	-				-0.4
3,162,382	-				-0.6
3,162,386	+				-0.6
3,162,386	+				+0.4
3,162,386	+				-0.3
3,162,421	+				-0.8
3,162,440	+				+0.2
3,162,441	-				-0.8
3,162,441	-				-1.1
3,162,458	+				+0.9
3,162,459	-				+0.0
3,162,576	+		DZA65_RS14520	0.17	+0.2
3,162,577	-		DZA65_RS14520	0.17	+0.5
3,162,632	+		DZA65_RS14520	0.20	+0.1
3,162,697	+				+0.6
3,162,697	+		DZA65_RS14520	0.25	+0.2
3,162,698	-		DZA65_RS14520	0.25	-1.1
3,162,698	-		DZA65_RS14520	0.25	+0.6
3,162,748	+		DZA65_RS14520	0.28	-2.1
3,162,754	+		DZA65_RS14520	0.28	-1.0
3,162,754	+		DZA65_RS14520	0.28	+0.4
3,162,755	-		DZA65_RS14520	0.28	-1.2
3,162,777	+		DZA65_RS14520	0.30	-1.4
3,162,778	-		DZA65_RS14520	0.30	+0.3
3,162,778	-		DZA65_RS14520	0.30	-2.0
3,162,778	-		DZA65_RS14520	0.30	+1.8
3,162,778	-		DZA65_RS14520	0.30	+1.7
3,162,778	-		DZA65_RS14520	0.30	-0.3
3,162,780	+		DZA65_RS14520	0.30	-0.8
3,162,781	-		DZA65_RS14520	0.30	+0.4
3,162,781	-		DZA65_RS14520	0.30	+0.3
3,162,833	-		DZA65_RS14520	0.34	-0.1
3,162,911	-		DZA65_RS14520	0.39	-1.1
3,162,911	-		DZA65_RS14520	0.39	-0.8
3,162,929	+		DZA65_RS14520	0.40	+1.3
3,162,930	-		DZA65_RS14520	0.40	+0.7
3,162,930	-		DZA65_RS14520	0.40	-0.6
3,162,976	+		DZA65_RS14520	0.43	+3.7
3,162,977	-		DZA65_RS14520	0.43	-1.1
3,163,034	+		DZA65_RS14520	0.47	-1.8
3,163,035	-		DZA65_RS14520	0.47	-0.6
3,163,084	+		DZA65_RS14520	0.50	-0.4
3,163,084	+		DZA65_RS14520	0.50	-0.5
3,163,085	-		DZA65_RS14520	0.50	+0.8
3,163,085	-		DZA65_RS14520	0.50	+0.1
3,163,088	+		DZA65_RS14520	0.50	+0.3
3,163,088	+		DZA65_RS14520	0.50	-0.0
3,163,088	+		DZA65_RS14520	0.50	-0.4
3,163,088	+		DZA65_RS14520	0.50	-0.1
3,163,089	-		DZA65_RS14520	0.51	+0.0
3,163,089	-		DZA65_RS14520	0.51	+0.2
3,163,089	-		DZA65_RS14520	0.51	+0.8
3,163,089	-		DZA65_RS14520	0.51	-1.1
3,163,089	-		DZA65_RS14520	0.51	-0.4
3,163,089	-		DZA65_RS14520	0.51	-0.8
3,163,089	-		DZA65_RS14520	0.51	+0.6
3,163,089	-		DZA65_RS14520	0.51	+1.3
3,163,089	-		DZA65_RS14520	0.51	-0.0
3,163,113	-		DZA65_RS14520	0.52	-0.2
3,163,176	+		DZA65_RS14520	0.56	+0.6
3,163,195	+		DZA65_RS14520	0.58	+1.3
3,163,196	-		DZA65_RS14520	0.58	-0.3
3,163,251	+		DZA65_RS14520	0.61	+0.0
3,163,271	+		DZA65_RS14520	0.63	+0.2
3,163,271	+		DZA65_RS14520	0.63	+0.4
3,163,272	-		DZA65_RS14520	0.63	-0.1
3,163,272	-		DZA65_RS14520	0.63	-0.6
3,163,277	+		DZA65_RS14520	0.63	+0.2
3,163,277	+		DZA65_RS14520	0.63	-0.3
3,163,277	+		DZA65_RS14520	0.63	+1.2
3,163,277	+		DZA65_RS14520	0.63	+1.5
3,163,278	-		DZA65_RS14520	0.63	+0.2
3,163,278	-		DZA65_RS14520	0.63	+0.9
3,163,278	-		DZA65_RS14520	0.63	+0.1
3,163,278	-		DZA65_RS14520	0.63	-0.7
3,163,278	-		DZA65_RS14520	0.63	+0.7
3,163,278	-		DZA65_RS14520	0.63	-1.1
3,163,279	+		DZA65_RS14520	0.63	-1.8
3,163,279	+		DZA65_RS14520	0.63	-0.8
3,163,279	+		DZA65_RS14520	0.63	+0.8
3,163,279	+		DZA65_RS14520	0.63	+0.8
3,163,279	+		DZA65_RS14520	0.63	-0.3
3,163,280	-		DZA65_RS14520	0.63	+0.9
3,163,280	-		DZA65_RS14520	0.63	+0.8
3,163,284	+		DZA65_RS14520	0.63	+0.4
3,163,284	+		DZA65_RS14520	0.63	+0.9
3,163,284	+		DZA65_RS14520	0.63	+0.3
3,163,285	-		DZA65_RS14520	0.63	-0.5
3,163,285	-		DZA65_RS14520	0.63	+1.4
3,163,285	-		DZA65_RS14520	0.63	+0.8
3,163,285	-		DZA65_RS14520	0.63	+0.1
3,163,295	+		DZA65_RS14520	0.64	+0.1
3,163,295	+		DZA65_RS14520	0.64	-2.1
3,163,317	-		DZA65_RS14520	0.66	-0.5
3,163,317	-		DZA65_RS14520	0.66	+0.9
3,163,325	+		DZA65_RS14520	0.66	-0.4
3,163,325	+		DZA65_RS14520	0.66	+0.0
3,163,325	+		DZA65_RS14520	0.66	-0.3
3,163,325	+		DZA65_RS14520	0.66	+0.2
3,163,325	+				-1.8
3,163,325	+		DZA65_RS14520	0.66	-0.8
3,163,325	+		DZA65_RS14520	0.66	+0.6
3,163,325	+		DZA65_RS14520	0.66	+1.2
3,163,325	+		DZA65_RS14520	0.66	-0.6
3,163,326	-		DZA65_RS14520	0.66	+1.3
3,163,326	-		DZA65_RS14520	0.66	+0.4
3,163,326	-		DZA65_RS14520	0.66	-0.2
3,163,326	-		DZA65_RS14520	0.66	-0.5
3,163,326	-		DZA65_RS14520	0.66	+1.5
3,163,369	+		DZA65_RS14520	0.69	+1.1
3,163,369	+		DZA65_RS14520	0.69	-1.8
3,163,370	-		DZA65_RS14520	0.69	-0.3
3,163,370	-		DZA65_RS14520	0.69	-1.1
3,163,370	-		DZA65_RS14520	0.69	+1.3
3,163,370	-		DZA65_RS14520	0.69	-0.6
3,163,410	+		DZA65_RS14520	0.72	+0.8
3,163,411	-		DZA65_RS14520	0.72	-1.3
3,163,411	-		DZA65_RS14520	0.72	+1.5
3,163,411	-		DZA65_RS14520	0.72	-2.6
3,163,411	-		DZA65_RS14520	0.72	-0.7
3,163,411	-		DZA65_RS14520	0.72	-1.3
3,163,411	-		DZA65_RS14520	0.72	+0.2
3,163,461	+		DZA65_RS14520	0.75	-1.7
3,163,461	+		DZA65_RS14520	0.75	-0.1
3,163,461	+		DZA65_RS14520	0.75	-2.1
3,163,462	-		DZA65_RS14520	0.75	-1.1
3,163,462	-		DZA65_RS14520	0.75	+0.4
3,163,462	-		DZA65_RS14520	0.75	+1.6
3,163,513	+		DZA65_RS14520	0.79	+0.5
3,163,513	+		DZA65_RS14520	0.79	-0.2
3,163,513	+		DZA65_RS14520	0.79	+0.4
3,163,514	-		DZA65_RS14520	0.79	-0.2
3,163,514	-		DZA65_RS14520	0.79	-0.3
3,163,520	+		DZA65_RS14520	0.79	-2.1
3,163,520	+		DZA65_RS14520	0.79	+0.8
3,163,550	+		DZA65_RS14520	0.81	-0.2
3,163,550	+		DZA65_RS14520	0.81	+0.2
3,163,550	+		DZA65_RS14520	0.81	+1.0
3,163,550	+		DZA65_RS14520	0.81	-1.0
3,163,551	-		DZA65_RS14520	0.81	-0.0
3,163,551	-		DZA65_RS14520	0.81	+1.4
3,163,551	-		DZA65_RS14520	0.81	+0.4
3,163,551	-		DZA65_RS14520	0.81	+0.9
3,163,551	-		DZA65_RS14520	0.81	-1.8
3,163,551	-		DZA65_RS14520	0.81	+0.6
3,163,551	-		DZA65_RS14520	0.81	-0.6
3,163,618	+		DZA65_RS14520	0.85	+0.8
3,163,628	+		DZA65_RS14520	0.86	-1.6
3,163,629	-		DZA65_RS14520	0.86	+0.8
3,163,630	+		DZA65_RS14520	0.86	-1.2
3,163,631	-		DZA65_RS14520	0.86	-0.4
3,163,656	+		DZA65_RS14520	0.88	+0.6
3,163,656	+		DZA65_RS14520	0.88	+0.2
3,163,657	-		DZA65_RS14520	0.88	+0.8
3,163,657	-		DZA65_RS14520	0.88	+0.1
3,163,657	-		DZA65_RS14520	0.88	-0.2
3,163,661	+		DZA65_RS14520	0.88	-1.6
3,163,661	+		DZA65_RS14520	0.88	-0.4
3,163,661	+		DZA65_RS14520	0.88	-1.0
3,163,661	+		DZA65_RS14520	0.88	-0.8
3,163,662	-		DZA65_RS14520	0.88	-0.5
3,163,662	-		DZA65_RS14520	0.88	-0.2
3,163,727	+				-2.0
3,163,727	+				-0.7
3,163,727	+				-0.1
3,163,727	+				-0.3
3,163,727	+				-0.3
3,163,727	+				-0.0
3,163,728	-				+0.0
3,163,728	-				-0.3
3,163,728	-				-0.5
3,163,729	+				+0.2
3,163,730	-				+0.9
3,163,730	-				-1.2
3,163,730	-				-1.0
3,163,841	-				+0.3
3,163,857	+				+0.8
3,163,857	+				+0.8
3,163,857	+				-0.7
3,163,857	+				+0.2
3,163,858	-				-0.3
3,163,858	-				-0.6
3,163,858	-				+1.7
3,163,858	-				-0.1
3,163,858	-				-1.2
3,163,870	-				-1.7
3,163,870	-				+0.6
3,163,894	-				+1.0
3,163,934	+				+1.6
3,163,935	-				-2.6
3,163,935	-				+1.4
3,163,936	+				+0.5
3,163,965	+				-0.2
3,163,965	+				+1.6
3,163,966	-				+0.7
3,163,966	-				-0.4
3,163,966	-				+0.5
3,163,966	-				+0.2
3,164,012	+		DZA65_RS14525	0.15	+0.3
3,164,012	+		DZA65_RS14525	0.15	-3.0
3,164,012	+		DZA65_RS14525	0.15	-0.2
3,164,012	+		DZA65_RS14525	0.15	-0.5
3,164,012	+		DZA65_RS14525	0.15	+0.7
3,164,013	-		DZA65_RS14525	0.15	-0.8
3,164,082	+		DZA65_RS14525	0.22	+0.2
3,164,082	+		DZA65_RS14525	0.22	-0.2
3,164,082	+		DZA65_RS14525	0.22	-0.7
3,164,085	+		DZA65_RS14525	0.22	-0.8
3,164,086	-		DZA65_RS14525	0.22	+0.0
3,164,086	-		DZA65_RS14525	0.22	+2.2
3,164,120	+		DZA65_RS14525	0.26	-0.8
3,164,120	+		DZA65_RS14525	0.26	-1.0
3,164,121	-		DZA65_RS14525	0.26	+0.5
3,164,121	-		DZA65_RS14525	0.26	+0.3
3,164,121	-		DZA65_RS14525	0.26	+0.2
3,164,121	-		DZA65_RS14525	0.26	-0.8
3,164,121	-		DZA65_RS14525	0.26	+0.7
3,164,122	+		DZA65_RS14525	0.26	+0.9
3,164,122	+		DZA65_RS14525	0.26	-0.7
3,164,122	+		DZA65_RS14525	0.26	-1.0
3,164,122	+		DZA65_RS14525	0.26	+0.5
3,164,122	+		DZA65_RS14525	0.26	+0.1
3,164,122	+		DZA65_RS14525	0.26	-1.6
3,164,122	+		DZA65_RS14525	0.26	-1.6
3,164,122	+		DZA65_RS14525	0.26	-0.1
3,164,123	-		DZA65_RS14525	0.26	-1.5
3,164,123	-		DZA65_RS14525	0.26	-1.4
3,164,123	-		DZA65_RS14525	0.26	+0.2
3,164,123	-		DZA65_RS14525	0.26	-0.7
3,164,123	-				-1.4
3,164,123	-		DZA65_RS14525	0.26	-0.2
3,164,123	-		DZA65_RS14525	0.26	+0.2
3,164,123	-		DZA65_RS14525	0.26	-0.8
3,164,123	-		DZA65_RS14525	0.26	+0.3
3,164,123	-		DZA65_RS14525	0.26	+0.7
3,164,150	+		DZA65_RS14525	0.29	+0.4
3,164,151	-		DZA65_RS14525	0.29	-1.4
3,164,182	+		DZA65_RS14525	0.33	+0.2
3,164,183	-		DZA65_RS14525	0.33	-0.8
3,164,183	-		DZA65_RS14525	0.33	+0.6
3,164,187	-		DZA65_RS14525	0.33	-1.9
3,164,187	-		DZA65_RS14525	0.33	-0.4
3,164,187	-		DZA65_RS14525	0.33	-0.6
3,164,207	+		DZA65_RS14525	0.35	+0.9
3,164,219	+		DZA65_RS14525	0.37	+0.5
3,164,219	+		DZA65_RS14525	0.37	+0.3
3,164,220	-		DZA65_RS14525	0.37	-0.2
3,164,220	-		DZA65_RS14525	0.37	+0.6
3,164,220	-		DZA65_RS14525	0.37	+1.2
3,164,220	-		DZA65_RS14525	0.37	+2.2
3,164,222	-		DZA65_RS14525	0.37	-0.6
3,164,249	+		DZA65_RS14525	0.40	-2.4
3,164,249	+		DZA65_RS14525	0.40	+1.0
3,164,252	+		DZA65_RS14525	0.40	+1.2
3,164,253	-		DZA65_RS14525	0.40	+0.8
3,164,253	-		DZA65_RS14525	0.40	-0.4
3,164,298	+		DZA65_RS14525	0.45	+0.2
3,164,299	-		DZA65_RS14525	0.45	+0.5
3,164,299	-		DZA65_RS14525	0.45	-0.3
3,164,299	-		DZA65_RS14525	0.45	+0.2
3,164,299	-		DZA65_RS14525	0.45	+0.2
3,164,300	+		DZA65_RS14525	0.45	+1.2
3,164,351	+		DZA65_RS14525	0.51	-0.5
3,164,385	+		DZA65_RS14525	0.54	-2.1
3,164,428	+		DZA65_RS14525	0.59	-2.6
3,164,429	-		DZA65_RS14525	0.59	-1.0
3,164,429	-				+3.3
3,164,432	+		DZA65_RS14525	0.59	-1.0
3,164,433	-		DZA65_RS14525	0.59	+1.2
3,164,434	+		DZA65_RS14525	0.59	+1.4
3,164,435	-		DZA65_RS14525	0.60	-1.5
3,164,435	-		DZA65_RS14525	0.60	-2.4
3,164,435	-		DZA65_RS14525	0.60	-1.2
3,164,505	+		DZA65_RS14525	0.67	-1.8
3,164,505	+		DZA65_RS14525	0.67	-0.5
3,164,505	+		DZA65_RS14525	0.67	-0.8
3,164,506	-		DZA65_RS14525	0.67	-0.9
3,164,506	-		DZA65_RS14525	0.67	+0.4
3,164,558	+		DZA65_RS14525	0.73	-0.3
3,164,739	+				+0.0
3,164,739	+				+0.2
3,164,739	+				+0.5
3,164,739	+				+2.4
3,164,740	-				-0.1
3,164,740	-				-0.9
3,164,740	-				+0.8
3,164,740	-				-0.8
3,164,794	+				-0.1
3,164,794	+				+1.2
3,164,794	+				+0.4
3,164,795	-				+1.0
3,164,803	+				-1.2
3,164,803	+				-0.8
3,164,803	+				+0.2
3,164,803	+				-0.7
3,164,804	-				+0.2
3,164,804	-				+0.5
3,164,815	+				-1.8
3,164,815	+				-1.0
3,164,815	+				-0.1
3,164,816	-				+2.1