Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14290

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
3,120,093	+		DZA65_RS14285	0.50	-1.4
3,120,093	+		DZA65_RS14285	0.50	-0.3
3,120,093	+		DZA65_RS14285	0.50	-1.8
3,120,093	+		DZA65_RS14285	0.50	+0.3
3,120,093	+		DZA65_RS14285	0.50	+0.3
3,120,094	-		DZA65_RS14285	0.50	+0.5
3,120,094	-		DZA65_RS14285	0.50	+0.2
3,120,151	+		DZA65_RS14285	0.53	-0.7
3,120,152	-		DZA65_RS14285	0.54	+0.3
3,120,159	+		DZA65_RS14285	0.54	+0.0
3,120,160	-		DZA65_RS14285	0.54	+0.2
3,120,170	-		DZA65_RS14285	0.55	-0.9
3,120,170	-		DZA65_RS14285	0.55	-0.3
3,120,173	+		DZA65_RS14285	0.55	+0.2
3,120,173	+		DZA65_RS14285	0.55	+0.8
3,120,174	-		DZA65_RS14285	0.55	+1.2
3,120,174	-		DZA65_RS14285	0.55	-0.4
3,120,174	-		DZA65_RS14285	0.55	-0.5
3,120,174	-		DZA65_RS14285	0.55	+0.0
3,120,206	+				+0.6
3,120,206	+		DZA65_RS14285	0.56	-2.4
3,120,206	+		DZA65_RS14285	0.56	-0.4
3,120,206	+		DZA65_RS14285	0.56	-0.1
3,120,206	+		DZA65_RS14285	0.56	+1.5
3,120,207	-		DZA65_RS14285	0.57	+0.1
3,120,207	-		DZA65_RS14285	0.57	+0.4
3,120,207	-		DZA65_RS14285	0.57	+1.8
3,120,207	-		DZA65_RS14285	0.57	-1.8
3,120,207	-		DZA65_RS14285	0.57	+1.4
3,120,207	-		DZA65_RS14285	0.57	-1.4
3,120,423	+		DZA65_RS14285	0.68	-1.0
3,120,424	-		DZA65_RS14285	0.68	+1.0
3,120,424	-		DZA65_RS14285	0.68	+0.3
3,120,441	+		DZA65_RS14285	0.69	-0.3
3,120,441	+		DZA65_RS14285	0.69	-0.8
3,120,441	+		DZA65_RS14285	0.69	+1.2
3,120,441	+		DZA65_RS14285	0.69	-0.6
3,120,442	-		DZA65_RS14285	0.69	-1.1
3,120,499	-		DZA65_RS14285	0.72	+1.3
3,120,528	+		DZA65_RS14285	0.74	+1.6
3,120,529	-		DZA65_RS14285	0.74	-1.3
3,120,530	+		DZA65_RS14285	0.74	-0.9
3,120,530	+		DZA65_RS14285	0.74	+0.2
3,120,530	+		DZA65_RS14285	0.74	+0.4
3,120,530	+		DZA65_RS14285	0.74	-1.1
3,120,531	-		DZA65_RS14285	0.74	-1.3
3,120,621	+		DZA65_RS14285	0.79	+0.9
3,120,673	+		DZA65_RS14285	0.82	+0.0
3,120,674	-		DZA65_RS14285	0.82	+1.4
3,120,674	-				+1.8
3,120,706	+		DZA65_RS14285	0.84	-2.4
3,120,706	+		DZA65_RS14285	0.84	-1.9
3,120,706	+		DZA65_RS14285	0.84	+0.2
3,120,706	+		DZA65_RS14285	0.84	-0.8
3,120,706	+		DZA65_RS14285	0.84	-0.5
3,120,706	+		DZA65_RS14285	0.84	-0.3
3,120,729	+		DZA65_RS14285	0.85	+0.5
3,120,729	+		DZA65_RS14285	0.85	-0.2
3,120,730	-		DZA65_RS14285	0.85	-0.8
3,120,730	-		DZA65_RS14285	0.85	-0.2
3,120,730	-		DZA65_RS14285	0.85	+0.8
3,120,753	+		DZA65_RS14285	0.86	+0.5
3,120,754	-		DZA65_RS14285	0.86	+0.2
3,120,754	-		DZA65_RS14285	0.86	+0.6
3,120,754	-		DZA65_RS14285	0.86	-0.6
3,120,754	-		DZA65_RS14285	0.86	-0.5
3,120,754	-		DZA65_RS14285	0.86	+0.2
3,120,754	-		DZA65_RS14285	0.86	-0.2
3,120,754	-		DZA65_RS14285	0.86	+2.1
3,120,788	-		DZA65_RS14285	0.88	-1.6
3,120,818	-		DZA65_RS14285	0.90	+0.9
3,120,842	-				+1.7
3,120,842	-				+0.5
3,120,868	-				+0.2
3,120,909	+				-1.4
3,120,909	+				+0.4
3,120,910	-				-0.2
3,120,910	-				-0.6
3,120,910	-				+0.2
3,120,910	-				-0.1
3,120,910	-				-0.6
3,120,933	+				+1.2
3,120,933	+				-1.4
3,120,933	+				+2.9
3,120,933	+				-1.4
3,120,933	+				-0.8
3,120,933	+				+0.9
3,120,933	+				+0.2
3,120,933	+				-0.8
3,120,933	+				+0.4
3,120,934	-				-1.1
3,120,934	-				-0.1
3,120,934	-				-0.3
3,120,934	-				+0.7
3,120,934	-				+0.4
3,120,934	-				+0.4
3,120,934	-				+1.0
3,120,934	-				-0.0
3,120,934	-				-2.1
3,120,937	+				+2.0
3,120,937	+				-0.1
3,120,937	+				+0.0
3,120,938	-				-0.8
3,120,938	-				+2.2
3,120,938	-				+0.6
3,120,938	-				+0.0
3,120,938	-				-2.8
3,120,938	-				+0.2
3,120,938	-				-0.8
3,120,942	+				+0.2
3,121,004	+				-0.5
3,121,005	-				+1.4
3,121,007	+				-0.8
3,121,007	+				-0.2
3,121,007	+				-0.1
3,121,007	+				+0.6
3,121,007	+				+0.0
3,121,007	+				+0.0
3,121,008	-				-0.2
3,121,008	-				-0.5
3,121,026	-				+1.0
3,121,026	-				+0.1
3,121,029	+				-0.2
3,121,029	+				+1.0
3,121,030	-				-1.2
3,121,086	-		DZA65_RS14290	0.14	-0.1
3,121,105	+		DZA65_RS14290	0.17	+0.5
3,121,106	-		DZA65_RS14290	0.17	+0.7
3,121,106	-		DZA65_RS14290	0.17	+0.9
3,121,106	-		DZA65_RS14290	0.17	+1.2
3,121,106	-		DZA65_RS14290	0.17	+0.8
3,121,184	+		DZA65_RS14290	0.29	-1.1
3,121,185	-		DZA65_RS14290	0.29	+0.5
3,121,185	-		DZA65_RS14290	0.29	+0.6
3,121,185	-		DZA65_RS14290	0.29	-0.4
3,121,185	-		DZA65_RS14290	0.29	-1.4
3,121,185	-		DZA65_RS14290	0.29	-1.8
3,121,185	-		DZA65_RS14290	0.29	-0.3
3,121,185	-		DZA65_RS14290	0.29	+0.4
3,121,185	-		DZA65_RS14290	0.29	+1.0
3,121,185	-		DZA65_RS14290	0.29	-0.2
3,121,282	+		DZA65_RS14290	0.44	+2.4
3,121,283	-		DZA65_RS14290	0.44	+2.3
3,121,283	-		DZA65_RS14290	0.44	+0.0
3,121,283	-		DZA65_RS14290	0.44	+1.6
3,121,283	-		DZA65_RS14290	0.44	+4.1
3,121,343	+		DZA65_RS14290	0.53	-0.7
3,121,344	-		DZA65_RS14290	0.53	+0.3
3,121,344	-		DZA65_RS14290	0.53	+0.8
3,121,344	-		DZA65_RS14290	0.53	+0.7
3,121,346	+		DZA65_RS14290	0.53	+0.5
3,121,347	-		DZA65_RS14290	0.53	+0.4
3,121,347	-		DZA65_RS14290	0.53	+0.8
3,121,347	-		DZA65_RS14290	0.53	+1.0
3,121,416	+		DZA65_RS14290	0.64	-0.5
3,121,416	+		DZA65_RS14290	0.64	+1.2
3,121,416	+		DZA65_RS14290	0.64	-0.6
3,121,416	+		DZA65_RS14290	0.64	-2.0
3,121,417	-		DZA65_RS14290	0.64	-0.1
3,121,417	-		DZA65_RS14290	0.64	+0.3
3,121,418	+		DZA65_RS14290	0.64	-0.1
3,121,418	+		DZA65_RS14290	0.64	-1.3
3,121,418	+		DZA65_RS14290	0.64	+0.5
3,121,419	-		DZA65_RS14290	0.64	-1.8
3,121,419	-		DZA65_RS14290	0.64	-0.4
3,121,419	-		DZA65_RS14290	0.64	-0.8
3,121,484	+		DZA65_RS14290	0.74	-1.4
3,121,484	+		DZA65_RS14290	0.74	+2.8
3,121,485	-		DZA65_RS14290	0.74	+0.9
3,121,485	-		DZA65_RS14290	0.74	+0.5
3,121,485	-		DZA65_RS14290	0.74	-0.1
3,121,485	-		DZA65_RS14290	0.74	+2.5
3,121,485	-		DZA65_RS14290	0.74	+1.4
3,121,485	-				+0.2
3,121,491	-		DZA65_RS14290	0.75	+0.7
3,121,517	+		DZA65_RS14290	0.79	+1.5
3,121,517	+		DZA65_RS14290	0.79	+0.5
3,121,517	+		DZA65_RS14290	0.79	-1.0
3,121,517	+		DZA65_RS14290	0.79	+0.4
3,121,518	-		DZA65_RS14290	0.79	+2.0
3,121,518	-		DZA65_RS14290	0.79	+0.4
3,121,580	+		DZA65_RS14290	0.89	+0.2
3,121,581	-		DZA65_RS14290	0.89	-0.1
3,121,581	-		DZA65_RS14290	0.89	-0.0
3,121,581	-		DZA65_RS14290	0.89	+1.3
3,121,581	-		DZA65_RS14290	0.89	-1.0
3,121,583	+		DZA65_RS14290	0.89	+1.8
3,121,584	-				-1.1
3,121,584	-		DZA65_RS14290	0.89	+0.2
3,121,603	-				+0.2
3,121,674	+				+1.0
3,121,681	+				+0.8
3,121,681	+				+0.9
3,121,681	+				-0.3
3,121,682	-				-1.2
3,121,682	-				+0.9
3,121,682	-				-0.5
3,121,705	+				+0.4
3,121,706	-				+0.9
3,121,706	-				-2.4
3,121,708	+				-0.2
3,121,708	+				+0.9
3,121,709	-				-1.2
3,121,763	-				+1.0
3,121,772	+				-1.1
3,121,776	-				-1.8
3,121,776	-				-0.6
3,121,808	+				-0.3
3,121,809	-				-1.4
3,121,838	+				+0.2
3,121,838	+				+0.2
3,121,844	+				+0.8
3,121,934	+				-1.4
3,121,937	+				+0.6
3,121,984	-				+0.6
3,121,984	-				-0.4
3,122,019	+				+1.7
3,122,025	+				+0.5
3,122,025	+				+0.8
3,122,026	-				-0.1
3,122,028	+				-0.5
3,122,029	-				+0.6
3,122,051	-				-0.4
3,122,052	+				-0.8
3,122,053	-				+0.1
3,122,067	-				-1.2
3,122,067	-				-0.1
3,122,071	-				-0.2
3,122,085	-				-1.0
3,122,147	-				+0.5
3,122,157	-				-0.3
3,122,198	+				+0.2
3,122,198	+				-0.2
3,122,203	+				-0.0
3,122,205	+				-0.6
3,122,206	-				+0.4
3,122,206	-				-0.9
3,122,209	-				+0.4
3,122,225	-				-0.1
3,122,240	-				+0.2
3,122,302	+				-0.5
3,122,302	+				-0.1
3,122,302	+				+0.5
3,122,303	-				-1.8
3,122,446	+		DZA65_RS14295	0.64	+0.7
3,122,447	-		DZA65_RS14295	0.64	-1.0
3,122,447	-		DZA65_RS14295	0.64	-0.7
3,122,516	+				-1.1
3,122,645	+				-1.3