Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13700

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,936,782	+		DZA65_RS13690	0.63	-2.0
2,936,783	-		DZA65_RS13690	0.63	-1.1
2,936,783	-		DZA65_RS13690	0.63	-1.0
2,936,839	-		DZA65_RS13690	0.69	-0.1
2,936,839	-		DZA65_RS13690	0.69	-1.7
2,936,850	+		DZA65_RS13690	0.70	+0.1
2,936,851	-		DZA65_RS13690	0.70	-0.1
2,936,851	-		DZA65_RS13690	0.70	+1.1
2,936,967	+		DZA65_RS13690	0.82	-0.7
2,936,968	-		DZA65_RS13690	0.82	-1.2
2,936,968	-		DZA65_RS13690	0.82	-0.7
2,937,024	+		DZA65_RS13690	0.88	-1.7
2,937,024	+		DZA65_RS13690	0.88	+0.3
2,937,025	-		DZA65_RS13690	0.88	-0.9
2,937,025	-		DZA65_RS13690	0.88	-2.2
2,937,025	-		DZA65_RS13690	0.88	-1.6
2,937,031	+		DZA65_RS13690	0.89	+0.7
2,937,116	+				+1.5
2,937,116	+				-0.3
2,937,117	-				-0.3
2,937,152	+				-0.9
2,937,152	+				-0.7
2,937,153	-				+0.7
2,937,156	+				-3.0
2,937,156	+				-0.2
2,937,157	-				-1.2
2,937,157	-				-1.5
2,937,187	+				-0.7
2,937,193	+				+1.0
2,937,193	+				+0.1
2,937,210	+				+1.3
2,937,211	-				+0.0
2,937,211	-				-0.7
2,937,218	+				-1.7
2,937,218	+				-1.2
2,937,287	+				-0.4
2,937,287	+				+1.3
2,937,288	-				+0.1
2,937,296	+				-1.9
2,937,296	+				-0.9
2,937,296	+				-1.3
2,937,297	-				+0.1
2,937,342	+				-1.7
2,937,419	+				+0.1
2,937,443	+				-0.6
2,937,515	+				-1.1
2,937,539	+				+0.3
2,937,539	+				+1.6
2,937,550	+				+0.5
2,937,565	+				+0.8
2,939,216	-		DZA65_RS13700	0.47	-2.7
2,939,217	+		DZA65_RS13700	0.47	-0.1
2,939,957	+		DZA65_RS13700	0.71	-3.2
2,939,957	+		DZA65_RS13700	0.71	-1.2
2,939,967	+		DZA65_RS13700	0.71	-0.7
2,939,967	+		DZA65_RS13700	0.71	+2.0
2,940,035	+		DZA65_RS13700	0.73	-0.9
2,940,036	-		DZA65_RS13700	0.73	-0.9
2,940,246	+		DZA65_RS13700	0.80	-0.8
2,940,246	+		DZA65_RS13700	0.80	-1.9
2,940,288	-		DZA65_RS13700	0.81	+1.1
2,940,338	+		DZA65_RS13700	0.83	+0.0
2,940,630	+				+1.1
2,940,631	-				-0.2
2,940,707	-				-0.9
2,940,745	+				-0.4
2,940,745	+				+1.3
2,940,745	+				-0.7
2,940,746	-				-1.4
2,940,746	-				+0.1
2,940,746	-				-3.0
2,940,871	+				+0.4
2,940,871	+				-0.9
2,940,871	+				-0.7
2,940,872	-				+0.1
2,940,872	-				-0.6
2,940,872	-				+0.1
2,940,872	-				-0.6
2,940,874	+				+0.6
2,940,874	+				+0.0
2,940,875	-				-0.3
2,940,875	-				+0.1
2,940,875	-				+0.5
2,940,907	-				-0.5
2,940,913	+				-0.4
2,940,913	+				-0.8
2,940,913	+				+0.1
2,940,913	+				+0.3
2,940,913	+				-0.7
2,940,913	+				-0.1
2,940,914	-				-2.2
2,940,945	+				-0.3
2,940,978	+				-1.5
2,940,978	+				-0.0
2,940,979	-				-0.1
2,940,979	-				+1.0
2,940,982	+		DZA65_RS13705	0.10	+0.3
2,940,982	+		DZA65_RS13705	0.10	+0.0
2,940,982	+		DZA65_RS13705	0.10	+1.1
2,940,982	+		DZA65_RS13705	0.10	-0.4
2,940,982	+		DZA65_RS13705	0.10	-0.4
2,940,982	+		DZA65_RS13705	0.10	-0.5
2,940,982	+		DZA65_RS13705	0.10	-0.4
2,940,982	+		DZA65_RS13705	0.10	-0.2
2,940,982	+		DZA65_RS13705	0.10	-1.1
2,940,982	+		DZA65_RS13705	0.10	-0.1
2,940,982	+		DZA65_RS13705	0.10	-0.4
2,940,982	+		DZA65_RS13705	0.10	-2.4
2,940,982	+		DZA65_RS13705	0.10	+0.7
2,940,983	-		DZA65_RS13705	0.11	+0.7
2,940,983	-		DZA65_RS13705	0.11	-0.6
2,940,983	-		DZA65_RS13705	0.11	-0.6
2,940,983	-		DZA65_RS13705	0.11	+0.1
2,940,983	-		DZA65_RS13705	0.11	-0.9
2,940,983	-		DZA65_RS13705	0.11	-0.8
2,940,983	-		DZA65_RS13705	0.11	+0.0
2,940,983	-		DZA65_RS13705	0.11	+0.1
2,940,983	-		DZA65_RS13705	0.11	-0.2
2,940,983	-		DZA65_RS13705	0.11	+0.6
2,940,983	-		DZA65_RS13705	0.11	-0.9
2,940,983	-		DZA65_RS13705	0.11	+0.3
2,940,983	-		DZA65_RS13705	0.11	+0.8
2,940,984	+		DZA65_RS13705	0.11	-0.1
2,940,984	+		DZA65_RS13705	0.11	-1.1
2,940,984	+		DZA65_RS13705	0.11	-0.9
2,940,985	-		DZA65_RS13705	0.11	+0.1
2,941,101	+		DZA65_RS13705	0.52	-1.2
2,941,101	+		DZA65_RS13705	0.52	+2.0
2,941,102	-		DZA65_RS13705	0.52	+0.3
2,941,102	-		DZA65_RS13705	0.52	-1.9
2,941,124	+		DZA65_RS13705	0.60	+1.0
2,941,125	-		DZA65_RS13705	0.60	-2.2
2,941,191	+		DZA65_RS13705	0.83	+0.1
2,941,192	-		DZA65_RS13705	0.83	-0.4
2,941,207	-		DZA65_RS13705	0.89	+0.9
2,941,242	+				-0.9
2,941,256	+				-0.4
2,941,259	-				+0.1
2,941,259	-				+1.7
2,941,340	-				-0.5
2,941,352	+				+0.9
2,941,352	+				-0.4
2,941,352	+				-0.6
2,941,352	+				+0.2
2,941,352	+				+0.1
2,941,353	-				-2.7
2,941,358	+				+0.6
2,941,359	-				-0.0
2,941,359	-				-0.0
2,941,380	+				+0.1
2,941,380	+				-0.1
2,941,380	+				+0.6
2,941,381	-				+0.3
2,941,394	+				-0.9
2,941,394	+				+0.5
2,941,394	+				+0.1
2,941,395	-				-1.0
2,941,395	-				-2.0
2,941,395	-				+0.2
2,941,395	-				-0.9
2,941,395	-				-1.4
2,941,398	+				+0.1
2,941,398	+				+0.1
2,941,399	-				-0.9
2,941,506	-				-2.7
2,941,506	-				-3.2
2,941,506	-				-2.7
2,941,513	+				-2.6
2,941,514	-				-0.3
2,941,515	+				-3.9
2,941,515	+				-1.4
2,941,515	+				+0.1
2,941,570	-		DZA65_RS13710	0.14	-2.0
2,941,572	+		DZA65_RS13710	0.15	-2.1
2,941,572	+		DZA65_RS13710	0.15	-2.0
2,941,572	+		DZA65_RS13710	0.15	-0.4
2,941,572	+		DZA65_RS13710	0.15	-2.3
2,941,572	+		DZA65_RS13710	0.15	-2.8
2,941,573	-		DZA65_RS13710	0.15	-1.9
2,941,573	-		DZA65_RS13710	0.15	-1.0
2,941,573	-		DZA65_RS13710	0.15	+0.4
2,941,594	+		DZA65_RS13710	0.17	-2.7
2,941,594	+		DZA65_RS13710	0.17	-1.4
2,941,594	+		DZA65_RS13710	0.17	-2.4
2,941,594	+		DZA65_RS13710	0.17	-1.1
2,941,595	-		DZA65_RS13710	0.17	-1.2
2,941,595	-		DZA65_RS13710	0.17	-3.8
2,941,657	+		DZA65_RS13710	0.23	-2.2
2,941,712	+		DZA65_RS13710	0.28	+0.6
2,941,712	+		DZA65_RS13710	0.28	-2.2
2,941,712	+		DZA65_RS13710	0.28	-3.3
2,941,712	+		DZA65_RS13710	0.28	-3.7
2,941,712	+		DZA65_RS13710	0.28	-1.4
2,941,712	+		DZA65_RS13710	0.28	-3.6
2,941,713	-		DZA65_RS13710	0.28	-0.3
2,941,713	-		DZA65_RS13710	0.28	-0.9
2,941,713	-		DZA65_RS13710	0.28	-2.3
2,941,713	-		DZA65_RS13710	0.28	-0.4
2,941,789	+		DZA65_RS13710	0.35	-1.6
2,941,790	-		DZA65_RS13710	0.35	-0.7
2,941,790	-		DZA65_RS13710	0.35	-0.1
2,941,790	-		DZA65_RS13710	0.35	-1.7