Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13610

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,920,782	+				+1.1
2,920,827	+				+1.1
2,920,827	+				-0.3
2,920,828	-				+0.1
2,920,950	+		DZA65_RS13600	0.35	+1.9
2,920,950	+		DZA65_RS13600	0.35	-0.3
2,920,951	-		DZA65_RS13600	0.36	+0.1
2,920,956	+		DZA65_RS13600	0.37	+0.1
2,920,957	-		DZA65_RS13600	0.37	-1.6
2,920,993	+		DZA65_RS13600	0.47	-0.7
2,920,993	+		DZA65_RS13600	0.47	-0.6
2,920,993	+		DZA65_RS13600	0.47	-0.8
2,920,993	+		DZA65_RS13600	0.47	-0.9
2,920,994	-		DZA65_RS13600	0.47	-0.1
2,920,994	-		DZA65_RS13600	0.47	+0.6
2,920,994	-		DZA65_RS13600	0.47	-0.2
2,920,994	-		DZA65_RS13600	0.47	-0.7
2,920,994	-		DZA65_RS13600	0.47	-0.4
2,920,994	-		DZA65_RS13600	0.47	-0.2
2,920,994	-		DZA65_RS13600	0.47	+0.4
2,921,111	-		DZA65_RS13600	0.77	+3.0
2,921,111	-		DZA65_RS13600	0.77	-0.1
2,921,153	-		DZA65_RS13600	0.88	-0.1
2,921,153	-		DZA65_RS13600	0.88	+0.5
2,921,153	-		DZA65_RS13600	0.88	-0.1
2,921,153	-		DZA65_RS13600	0.88	-0.6
2,921,252	+		DZA65_RS13605	0.13	-0.9
2,921,252	+				+0.7
2,921,252	+		DZA65_RS13605	0.13	-0.5
2,921,253	-		DZA65_RS13605	0.14	+0.3
2,921,263	+		DZA65_RS13605	0.17	-1.0
2,921,263	+		DZA65_RS13605	0.17	+0.1
2,921,263	+		DZA65_RS13605	0.17	-0.3
2,921,263	+		DZA65_RS13605	0.17	+1.1
2,921,263	+		DZA65_RS13605	0.17	-2.4
2,921,263	+		DZA65_RS13605	0.17	-0.5
2,921,264	-		DZA65_RS13605	0.17	-0.7
2,921,264	-		DZA65_RS13605	0.17	+0.1
2,921,264	-		DZA65_RS13605	0.17	+0.7
2,921,264	-		DZA65_RS13605	0.17	+0.1
2,921,264	-		DZA65_RS13605	0.17	-1.4
2,921,264	-		DZA65_RS13605	0.17	+0.4
2,921,438	+		DZA65_RS13605	0.66	+1.0
2,921,439	-		DZA65_RS13605	0.67	+0.8
2,921,439	-		DZA65_RS13605	0.67	-1.4
2,921,450	+		DZA65_RS13605	0.70	+0.4
2,921,450	+				-0.9
2,921,451	-		DZA65_RS13605	0.70	+0.8
2,921,494	+		DZA65_RS13605	0.82	+1.4
2,921,494	+		DZA65_RS13605	0.82	+0.4
2,921,495	-		DZA65_RS13605	0.83	-0.0
2,921,556	-				-1.3
2,921,613	+				-0.2
2,921,623	-				-0.1
2,921,653	-				+1.1
2,921,653	-				+0.1
2,921,670	+				+1.7
2,921,671	-				+0.9
2,921,719	+				+0.9
2,921,847	+		DZA65_RS13610	0.17	-0.3
2,921,847	+		DZA65_RS13610	0.17	-1.4
2,921,847	+		DZA65_RS13610	0.17	-0.1
2,921,847	+		DZA65_RS13610	0.17	+0.4
2,921,847	+		DZA65_RS13610	0.17	+1.1
2,921,847	+		DZA65_RS13610	0.17	-0.9
2,921,848	-		DZA65_RS13610	0.17	-0.7
2,921,865	+		DZA65_RS13610	0.18	+2.1
2,921,865	+		DZA65_RS13610	0.18	-0.9
2,921,865	+		DZA65_RS13610	0.18	+0.1
2,921,865	+		DZA65_RS13610	0.18	-1.1
2,921,866	-		DZA65_RS13610	0.19	-0.4
2,921,866	-		DZA65_RS13610	0.19	+0.4
2,921,866	-				+0.9
2,921,866	-		DZA65_RS13610	0.19	+0.4
2,921,866	-		DZA65_RS13610	0.19	-0.0
2,921,957	-		DZA65_RS13610	0.27	-0.4
2,921,989	+		DZA65_RS13610	0.30	+1.1
2,921,990	-		DZA65_RS13610	0.30	-0.3
2,922,169	+		DZA65_RS13610	0.47	+1.1
2,922,242	-		DZA65_RS13610	0.54	-0.1
2,922,242	-		DZA65_RS13610	0.54	-0.0
2,922,242	-		DZA65_RS13610	0.54	+1.7
2,922,247	+		DZA65_RS13610	0.54	-0.0
2,922,247	+		DZA65_RS13610	0.54	-0.3
2,922,248	-		DZA65_RS13610	0.55	+0.7
2,922,363	+		DZA65_RS13610	0.65	+0.1
2,922,364	-		DZA65_RS13610	0.65	-0.6
2,922,364	-		DZA65_RS13610	0.65	+0.1
2,922,373	+		DZA65_RS13610	0.66	+1.3
2,922,550	+		DZA65_RS13610	0.83	-0.3
2,922,550	+		DZA65_RS13610	0.83	-0.9
2,922,550	+		DZA65_RS13610	0.83	+1.6
2,922,550	+		DZA65_RS13610	0.83	+1.2
2,922,551	-		DZA65_RS13610	0.83	-0.3
2,922,551	-		DZA65_RS13610	0.83	+0.1
2,922,551	-		DZA65_RS13610	0.83	+0.9
2,922,576	+		DZA65_RS13610	0.85	-0.4
2,922,576	+		DZA65_RS13610	0.85	+0.1
2,922,576	+		DZA65_RS13610	0.85	-0.9
2,922,577	-		DZA65_RS13610	0.85	+0.4
2,922,680	-				+0.5
2,922,693	+				+1.8
2,922,693	+				+0.5
2,922,693	+				-0.1
2,922,693	+				+0.6
2,922,694	-				+0.4
2,922,694	-				-0.0
2,922,694	-				-0.7
2,922,694	-				+0.8
2,922,730	+				+0.1
2,922,730	+				-0.1
2,922,731	-				-0.5
2,922,834	+				+0.9
2,922,834	+				+0.6
2,922,835	-				-0.9
2,922,835	-				-1.1
2,922,856	+				-1.4
2,922,861	+				+1.6
2,922,862	-				-1.9
2,922,915	+				-0.1
2,922,922	+				-0.4
2,922,922	+				-1.4
2,922,937	-				+0.1
2,922,966	-				+1.9
2,922,966	-				-0.3
2,923,003	+				-0.5
2,923,024	+				-0.2
2,923,024	+				+0.1
2,923,025	-				+0.1
2,923,025	-				-0.3
2,923,037	-				-0.2
2,923,037	-				+1.4
2,923,044	+				-1.1
2,923,044	+				+0.1
2,923,044	+				-0.3
2,923,044	+				+0.4
2,923,044	+				+0.4
2,923,045	-				-0.5
2,923,045	-				+1.1
2,923,045	-				+0.6
2,923,045	-				-1.4
2,923,045	-				+0.1
2,923,045	-				+0.9
2,923,356	+		DZA65_RS13615	0.23	+1.1
2,923,356	+		DZA65_RS13615	0.23	-0.1
2,923,356	+		DZA65_RS13615	0.23	-2.4
2,923,357	-		DZA65_RS13615	0.23	+0.4
2,923,357	-		DZA65_RS13615	0.23	-1.9
2,923,357	-		DZA65_RS13615	0.23	+0.7
2,923,359	+		DZA65_RS13615	0.23	-1.4
2,923,359	+		DZA65_RS13615	0.23	-0.0
2,923,360	-		DZA65_RS13615	0.23	-0.4
2,923,371	+		DZA65_RS13615	0.24	+0.7
2,923,372	-		DZA65_RS13615	0.24	+0.1
2,923,385	+		DZA65_RS13615	0.25	-0.2
2,923,484	-		DZA65_RS13615	0.32	+0.8
2,923,484	-		DZA65_RS13615	0.32	-1.9
2,923,527	+		DZA65_RS13615	0.35	+0.1
2,923,527	+		DZA65_RS13615	0.35	-1.0
2,923,528	-		DZA65_RS13615	0.35	+0.4
2,923,528	-		DZA65_RS13615	0.35	+0.5
2,923,565	-		DZA65_RS13615	0.37	+0.3
2,923,574	-		DZA65_RS13615	0.38	+0.8
2,923,661	-		DZA65_RS13615	0.44	+0.6
2,923,686	+		DZA65_RS13615	0.46	+0.4
2,923,686	+		DZA65_RS13615	0.46	-1.0
2,923,686	+		DZA65_RS13615	0.46	+0.8
2,923,686	+		DZA65_RS13615	0.46	+0.4
2,923,686	+		DZA65_RS13615	0.46	-0.3
2,923,686	+		DZA65_RS13615	0.46	+0.8
2,923,686	+		DZA65_RS13615	0.46	-0.6
2,923,687	-		DZA65_RS13615	0.46	-1.7
2,923,687	-		DZA65_RS13615	0.46	+1.1
2,923,687	-		DZA65_RS13615	0.46	-1.7
2,923,687	-		DZA65_RS13615	0.46	-0.4
2,923,687	-		DZA65_RS13615	0.46	-0.3