Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13260

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,835,684	+		DZA65_RS13255	0.35	-1.5
2,835,684	+		DZA65_RS13255	0.35	+0.2
2,835,684	+		DZA65_RS13255	0.35	+0.9
2,835,684	+		DZA65_RS13255	0.35	+0.5
2,835,684	+		DZA65_RS13255	0.35	+2.0
2,835,685	-		DZA65_RS13255	0.36	+1.1
2,835,685	-		DZA65_RS13255	0.36	+0.1
2,835,685	-		DZA65_RS13255	0.36	+0.0
2,835,687	+		DZA65_RS13255	0.36	+1.1
2,835,687	+		DZA65_RS13255	0.36	-0.0
2,835,691	+		DZA65_RS13255	0.36	-0.5
2,835,691	+		DZA65_RS13255	0.36	-0.1
2,835,692	-		DZA65_RS13255	0.36	+0.5
2,835,744	-		DZA65_RS13255	0.40	-1.0
2,835,744	-		DZA65_RS13255	0.40	+1.4
2,835,745	+		DZA65_RS13255	0.40	+1.1
2,835,745	+		DZA65_RS13255	0.40	-0.9
2,835,746	-		DZA65_RS13255	0.40	-0.9
2,835,746	-		DZA65_RS13255	0.40	-0.1
2,835,746	-		DZA65_RS13255	0.40	-0.2
2,835,754	+		DZA65_RS13255	0.40	+0.1
2,835,754	+		DZA65_RS13255	0.40	-0.3
2,835,754	+		DZA65_RS13255	0.40	+0.1
2,835,755	-		DZA65_RS13255	0.41	-1.7
2,835,755	-		DZA65_RS13255	0.41	+0.2
2,835,758	-		DZA65_RS13255	0.41	+0.5
2,835,774	+		DZA65_RS13255	0.42	-1.3
2,835,784	+		DZA65_RS13255	0.43	+0.1
2,835,784	+		DZA65_RS13255	0.43	+0.6
2,835,785	-		DZA65_RS13255	0.43	+0.1
2,835,785	-		DZA65_RS13255	0.43	+2.6
2,835,785	-		DZA65_RS13255	0.43	-0.8
2,835,786	+		DZA65_RS13255	0.43	+0.2
2,835,786	+		DZA65_RS13255	0.43	+0.4
2,835,889	-		DZA65_RS13255	0.50	+0.1
2,835,988	+		DZA65_RS13255	0.57	-0.1
2,835,988	+		DZA65_RS13255	0.57	-2.9
2,835,996	+		DZA65_RS13255	0.58	+0.0
2,835,996	+		DZA65_RS13255	0.58	-2.0
2,835,996	+		DZA65_RS13255	0.58	-2.7
2,836,060	+		DZA65_RS13255	0.62	+0.5
2,836,060	+		DZA65_RS13255	0.62	+0.5
2,836,060	+		DZA65_RS13255	0.62	-0.6
2,836,060	+		DZA65_RS13255	0.62	+0.4
2,836,060	+		DZA65_RS13255	0.62	+1.8
2,836,060	+		DZA65_RS13255	0.62	-0.6
2,836,060	+		DZA65_RS13255	0.62	-1.5
2,836,060	+		DZA65_RS13255	0.62	-1.1
2,836,061	-		DZA65_RS13255	0.62	-0.4
2,836,061	-		DZA65_RS13255	0.62	-0.4
2,836,061	-		DZA65_RS13255	0.62	+0.3
2,836,061	-		DZA65_RS13255	0.62	+0.1
2,836,061	-		DZA65_RS13255	0.62	-1.0
2,836,061	-		DZA65_RS13255	0.62	-1.5
2,836,061	-		DZA65_RS13255	0.62	+0.2
2,836,129	-				+1.4
2,836,220	+		DZA65_RS13255	0.74	-0.7
2,836,231	+		DZA65_RS13255	0.75	+0.5
2,836,231	+		DZA65_RS13255	0.75	-0.1
2,836,231	+		DZA65_RS13255	0.75	-0.5
2,836,231	+		DZA65_RS13255	0.75	+0.1
2,836,232	-		DZA65_RS13255	0.75	-1.3
2,836,266	+		DZA65_RS13255	0.77	+0.3
2,836,267	-		DZA65_RS13255	0.77	+1.6
2,836,351	+		DZA65_RS13255	0.83	-0.3
2,836,399	-		DZA65_RS13255	0.87	-0.2
2,836,478	+				+0.8
2,836,511	+				-0.0
2,836,512	-				+0.1
2,836,556	+				-1.2
2,836,557	-				-1.5
2,836,624	+				+2.8
2,836,624	+				+1.1
2,836,624	+				+0.5
2,836,625	-				+0.4
2,836,625	-				-0.1
2,836,625	-				-0.2
2,836,730	+				-0.6
2,836,815	+		DZA65_RS13260	0.10	-0.1
2,836,815	+		DZA65_RS13260	0.10	+0.3
2,836,820	+		DZA65_RS13260	0.11	-1.5
2,836,820	+		DZA65_RS13260	0.11	+0.1
2,836,858	+		DZA65_RS13260	0.13	+0.5
2,836,858	+		DZA65_RS13260	0.13	+0.5
2,836,858	+		DZA65_RS13260	0.13	+0.6
2,836,858	+		DZA65_RS13260	0.13	-0.9
2,836,859	-		DZA65_RS13260	0.13	-0.6
2,836,946	+		DZA65_RS13260	0.17	+2.3
2,836,946	+		DZA65_RS13260	0.17	-0.9
2,836,947	-		DZA65_RS13260	0.17	+1.6
2,836,947	-		DZA65_RS13260	0.17	-0.9
2,836,947	-		DZA65_RS13260	0.17	+1.1
2,837,007	+		DZA65_RS13260	0.21	+0.5
2,837,007	+		DZA65_RS13260	0.21	+0.1
2,837,007	+		DZA65_RS13260	0.21	-0.7
2,837,007	+		DZA65_RS13260	0.21	+0.1
2,837,008	-		DZA65_RS13260	0.21	-0.0
2,837,008	-		DZA65_RS13260	0.21	-0.2
2,837,035	+		DZA65_RS13260	0.22	-0.2
2,837,036	-		DZA65_RS13260	0.22	-0.5
2,837,291	+		DZA65_RS13260	0.35	+0.1
2,837,291	+		DZA65_RS13260	0.35	+3.3
2,837,291	+		DZA65_RS13260	0.35	-0.2
2,837,291	+		DZA65_RS13260	0.35	-1.5
2,837,292	-		DZA65_RS13260	0.36	-0.0
2,837,292	-		DZA65_RS13260	0.36	+1.9
2,837,310	-		DZA65_RS13260	0.36	+0.5
2,837,355	+		DZA65_RS13260	0.39	+1.5
2,837,355	+		DZA65_RS13260	0.39	-1.2
2,837,355	+		DZA65_RS13260	0.39	+0.8
2,837,356	-		DZA65_RS13260	0.39	+0.1
2,837,356	-		DZA65_RS13260	0.39	+0.9
2,837,387	+		DZA65_RS13260	0.41	-1.3
2,837,696	-		DZA65_RS13260	0.57	-1.2
2,837,716	+		DZA65_RS13260	0.58	+1.1
2,837,717	-		DZA65_RS13260	0.58	+0.6
2,837,717	-		DZA65_RS13260	0.58	+0.8
2,837,717	-		DZA65_RS13260	0.58	-0.1
2,837,867	+		DZA65_RS13260	0.66	-0.6
2,837,867	+		DZA65_RS13260	0.66	-0.4
2,837,867	+		DZA65_RS13260	0.66	-0.2
2,837,867	+		DZA65_RS13260	0.66	-0.5
2,837,867	+		DZA65_RS13260	0.66	+0.3
2,837,867	+		DZA65_RS13260	0.66	+0.4
2,837,867	+		DZA65_RS13260	0.66	+1.2
2,837,868	-		DZA65_RS13260	0.66	+0.3
2,837,868	-		DZA65_RS13260	0.66	-0.5
2,837,868	-		DZA65_RS13260	0.66	+0.1
2,837,868	-		DZA65_RS13260	0.66	-1.2
2,837,880	+		DZA65_RS13260	0.67	-0.2
2,837,880	+		DZA65_RS13260	0.67	-0.7
2,838,047	+		DZA65_RS13260	0.75	+0.3
2,838,048	-		DZA65_RS13260	0.75	-0.9
2,838,048	-		DZA65_RS13260	0.75	+0.1
2,838,081	+		DZA65_RS13260	0.77	-1.2
2,838,082	-		DZA65_RS13260	0.77	+0.0
2,838,083	+		DZA65_RS13260	0.77	+1.3
2,838,083	+		DZA65_RS13260	0.77	+0.5
2,838,084	-		DZA65_RS13260	0.77	-0.6
2,838,084	-		DZA65_RS13260	0.77	-0.3
2,838,084	-		DZA65_RS13260	0.77	+0.7
2,838,084	-		DZA65_RS13260	0.77	-0.1
2,838,084	-		DZA65_RS13260	0.77	+0.1
2,838,105	+		DZA65_RS13260	0.78	-1.2
2,838,105	+		DZA65_RS13260	0.78	-0.2
2,838,106	-		DZA65_RS13260	0.78	+0.1
2,838,204	+		DZA65_RS13260	0.84	-0.3
2,838,217	+		DZA65_RS13260	0.84	+0.1
2,838,217	+		DZA65_RS13260	0.84	-0.3
2,838,217	+		DZA65_RS13260	0.84	-0.2
2,838,217	+		DZA65_RS13260	0.84	-0.8
2,838,217	+		DZA65_RS13260	0.84	-0.4
2,838,218	-		DZA65_RS13260	0.84	-1.5
2,838,218	-		DZA65_RS13260	0.84	-1.2
2,838,296	+		DZA65_RS13260	0.89	-0.6
2,838,297	-		DZA65_RS13260	0.89	-0.1
2,838,297	-		DZA65_RS13260	0.89	-0.6
2,838,418	-				-0.3
2,838,443	-				+0.3
2,838,451	-				+0.1
2,838,456	+				+0.9
2,838,457	-				+0.7
2,838,485	-				+1.0
2,838,507	-				-1.5
2,838,518	-				-0.7
2,838,525	+				+0.7
2,838,525	+				+0.9
2,838,526	-				+1.7
2,838,571	+				+0.5
2,838,572	-				-1.2
2,838,572	-				-0.7
2,838,572	-				+1.1
2,838,589	+		DZA65_RS22930	0.17	+1.0
2,838,682	+		DZA65_RS22930	0.68	-0.5
2,838,684	+		DZA65_RS22930	0.69	-0.2
2,838,685	-		DZA65_RS22930	0.70	-2.2
2,838,685	-		DZA65_RS22930	0.70	-0.4
2,838,712	-		DZA65_RS22930	0.85	+0.9
2,838,712	-		DZA65_RS22930	0.85	+0.2
2,838,852	+				-0.4
2,838,899	+		DZA65_RS13265	0.11	-1.6
2,838,900	-		DZA65_RS13265	0.11	+0.7
2,838,909	+		DZA65_RS13265	0.12	-0.4
2,838,910	-		DZA65_RS13265	0.12	+0.7
2,838,910	-		DZA65_RS13265	0.12	-0.2
2,838,951	+		DZA65_RS13265	0.17	+1.0
2,838,951	+		DZA65_RS13265	0.17	-0.0
2,838,952	-		DZA65_RS13265	0.17	+0.4
2,838,954	-		DZA65_RS13265	0.17	-0.3
2,838,993	+		DZA65_RS13265	0.22	-0.1
2,838,994	-		DZA65_RS13265	0.22	-1.5
2,838,998	-		DZA65_RS13265	0.22	-1.7
2,839,016	-		DZA65_RS13265	0.24	-1.5
2,839,058	+		DZA65_RS13265	0.29	-0.6
2,839,058	+		DZA65_RS13265	0.29	-1.9
2,839,058	+		DZA65_RS13265	0.29	+0.1
2,839,059	-		DZA65_RS13265	0.29	-1.2
2,839,077	+		DZA65_RS13265	0.32	+1.1
2,839,078	-		DZA65_RS13265	0.32	-2.2
2,839,079	+		DZA65_RS13265	0.32	+0.6
2,839,079	+		DZA65_RS13265	0.32	-0.7
2,839,080	-		DZA65_RS13265	0.32	-0.2
2,839,097	+		DZA65_RS13265	0.34	+1.1
2,839,097	+		DZA65_RS13265	0.34	-0.1
2,839,097	+		DZA65_RS13265	0.34	-1.0
2,839,134	+		DZA65_RS13265	0.38	+0.6
2,839,137	+		DZA65_RS13265	0.39	-0.4
2,839,138	-		DZA65_RS13265	0.39	-0.2
2,839,138	-		DZA65_RS13265	0.39	-0.2
2,839,156	-		DZA65_RS13265	0.41	+0.9
2,839,156	-		DZA65_RS13265	0.41	-1.7
2,839,165	+		DZA65_RS13265	0.42	-0.1
2,839,165	+		DZA65_RS13265	0.42	+1.1
2,839,243	-		DZA65_RS13265	0.51	-0.6
2,839,243	-		DZA65_RS13265	0.51	+1.3
2,839,243	-		DZA65_RS13265	0.51	+1.1
2,839,243	-		DZA65_RS13265	0.51	-0.5
2,839,243	-		DZA65_RS13265	0.51	-2.7
2,839,246	-		DZA65_RS13265	0.51	+1.6
2,839,246	-		DZA65_RS13265	0.51	-2.2
2,839,377	+		DZA65_RS13265	0.67	-0.4
2,839,377	+		DZA65_RS13265	0.67	+0.7
2,839,377	+		DZA65_RS13265	0.67	+0.6
2,839,377	+		DZA65_RS13265	0.67	+1.5
2,839,377	+		DZA65_RS13265	0.67	+0.4
2,839,378	-		DZA65_RS13265	0.67	-1.1
2,839,378	-				+0.5
2,839,379	+		DZA65_RS13265	0.67	-0.9
2,839,379	+		DZA65_RS13265	0.67	+0.1
2,839,379	+		DZA65_RS13265	0.67	-0.7
2,839,380	-		DZA65_RS13265	0.67	+0.6
2,839,380	-		DZA65_RS13265	0.67	+0.4
2,839,380	-		DZA65_RS13265	0.67	+0.1
2,839,380	-		DZA65_RS13265	0.67	-0.7