Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12125

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,588,363	+		DZA65_RS12110	0.86	-1.8
2,588,363	+		DZA65_RS12110	0.86	-0.3
2,588,363	+		DZA65_RS12110	0.86	-0.1
2,588,363	+		DZA65_RS12110	0.86	-1.0
2,588,363	+		DZA65_RS12110	0.86	-0.0
2,588,363	+		DZA65_RS12110	0.86	+0.3
2,588,364	-		DZA65_RS12110	0.86	+2.2
2,588,364	-		DZA65_RS12110	0.86	-1.5
2,588,364	-		DZA65_RS12110	0.86	-2.4
2,588,364	-		DZA65_RS12110	0.86	+0.0
2,588,364	-		DZA65_RS12110	0.86	+0.4
2,588,385	-		DZA65_RS12110	0.88	-0.8
2,588,385	-		DZA65_RS12110	0.88	-0.4
2,588,492	+				+0.5
2,588,493	-				-2.1
2,588,493	-				+0.6
2,588,493	-				-0.6
2,588,495	+				-0.5
2,588,495	+				+0.0
2,588,495	+				+0.5
2,588,495	+				-0.1
2,588,495	+				+1.0
2,588,504	+				+0.4
2,588,543	+				-1.2
2,588,544	-				+0.2
2,588,544	-				+0.8
2,588,707	+		DZA65_RS12115	0.10	-0.2
2,588,775	-		DZA65_RS12115	0.27	+0.0
2,588,775	-		DZA65_RS12115	0.27	+0.0
2,588,775	-		DZA65_RS12115	0.27	-0.2
2,588,780	+		DZA65_RS12115	0.28	+0.5
2,588,912	+		DZA65_RS12115	0.60	+0.9
2,588,913	-		DZA65_RS12115	0.60	-1.0
2,588,956	-		DZA65_RS12115	0.71	+1.0
2,589,033	+		DZA65_RS12115	0.90	-1.0
2,589,033	+		DZA65_RS12115	0.90	+0.7
2,589,034	-		DZA65_RS12115	0.90	+0.6
2,589,034	-		DZA65_RS12115	0.90	-2.5
2,589,135	-		DZA65_RS12120	0.33	-0.3
2,589,281	-				-0.5
2,589,281	-				-0.2
2,589,281	-				-0.1
2,589,356	+				+0.0
2,589,356	+				-0.6
2,589,357	-				-0.8
2,589,357	-				-0.1
2,589,357	-				+1.6
2,589,357	-				+0.0
2,589,357	-				+0.4
2,589,357	-				-1.5
2,589,357	-				+0.2
2,589,357	-				+1.0
2,589,513	-		DZA65_RS12125	0.11	-0.1
2,589,536	+		DZA65_RS12125	0.12	+0.0
2,589,536	+		DZA65_RS12125	0.12	-1.1
2,589,537	-		DZA65_RS12125	0.12	+0.2
2,589,775	-		DZA65_RS12125	0.23	+1.2
2,589,780	+		DZA65_RS12125	0.23	-0.6
2,589,780	+		DZA65_RS12125	0.23	+0.6
2,589,781	-		DZA65_RS12125	0.23	+1.2
2,589,781	-		DZA65_RS12125	0.23	+0.7
2,589,822	+		DZA65_RS12125	0.25	+0.2
2,589,823	-		DZA65_RS12125	0.25	-0.7
2,589,847	-		DZA65_RS12125	0.27	+1.7
2,589,870	+		DZA65_RS12125	0.28	+1.3
2,589,870	+		DZA65_RS12125	0.28	+1.3
2,589,871	-		DZA65_RS12125	0.28	+1.3
2,590,102	+		DZA65_RS12125	0.39	-0.4
2,590,102	+		DZA65_RS12125	0.39	+1.7
2,590,102	+		DZA65_RS12125	0.39	-1.4
2,590,103	-		DZA65_RS12125	0.39	-0.7
2,590,103	-		DZA65_RS12125	0.39	+1.2
2,590,103	-		DZA65_RS12125	0.39	+0.9
2,590,103	-		DZA65_RS12125	0.39	+0.0
2,590,103	-		DZA65_RS12125	0.39	+0.1
2,590,103	-				+1.0
2,590,103	-		DZA65_RS12125	0.39	+0.0
2,590,103	-		DZA65_RS12125	0.39	+0.1
2,590,240	-		DZA65_RS12125	0.46	+1.5
2,590,440	-		DZA65_RS12125	0.55	+0.9
2,590,485	+				+0.9
2,590,485	+		DZA65_RS12125	0.57	+0.9
2,590,485	+		DZA65_RS12125	0.57	-1.2
2,590,485	+		DZA65_RS12125	0.57	-0.2
2,590,485	+		DZA65_RS12125	0.57	-1.4
2,590,485	+		DZA65_RS12125	0.57	-0.2
2,590,485	+		DZA65_RS12125	0.57	+0.0
2,590,486	-		DZA65_RS12125	0.57	-0.4
2,590,486	-		DZA65_RS12125	0.57	-0.7
2,590,486	-		DZA65_RS12125	0.57	+0.6
2,590,486	-		DZA65_RS12125	0.57	-2.3
2,590,486	-		DZA65_RS12125	0.57	+0.6
2,590,486	-		DZA65_RS12125	0.57	+1.5
2,590,486	-		DZA65_RS12125	0.57	+1.5
2,590,486	-		DZA65_RS12125	0.57	-0.4
2,590,486	-		DZA65_RS12125	0.57	+0.5
2,590,486	-		DZA65_RS12125	0.57	+0.0
2,590,486	-		DZA65_RS12125	0.57	-0.1
2,590,486	-		DZA65_RS12125	0.57	-0.4
2,590,486	-		DZA65_RS12125	0.57	+2.2
2,590,486	-		DZA65_RS12125	0.57	-0.3
2,590,489	+		DZA65_RS12125	0.58	+0.0
2,590,489	+		DZA65_RS12125	0.58	+0.5
2,590,489	+		DZA65_RS12125	0.58	-1.5
2,590,489	+		DZA65_RS12125	0.58	-0.3
2,590,489	+		DZA65_RS12125	0.58	+0.5
2,590,489	+		DZA65_RS12125	0.58	+0.0
2,590,489	+		DZA65_RS12125	0.58	+0.6
2,590,489	+		DZA65_RS12125	0.58	+2.0
2,590,489	+		DZA65_RS12125	0.58	-0.2
2,590,489	+		DZA65_RS12125	0.58	-0.4
2,590,489	+		DZA65_RS12125	0.58	-1.2
2,590,489	+		DZA65_RS12125	0.58	+1.0
2,590,490	-		DZA65_RS12125	0.58	+0.0
2,590,490	-		DZA65_RS12125	0.58	-0.5
2,590,490	-		DZA65_RS12125	0.58	+0.6
2,590,490	-		DZA65_RS12125	0.58	-1.0
2,590,490	-		DZA65_RS12125	0.58	-0.1
2,590,490	-		DZA65_RS12125	0.58	-0.3
2,590,490	-		DZA65_RS12125	0.58	-1.0
2,590,779	+		DZA65_RS12125	0.71	+0.3
2,590,803	-		DZA65_RS12125	0.73	+0.5
2,590,883	+				-0.5
2,590,884	-		DZA65_RS12125	0.77	-1.7
2,591,063	+		DZA65_RS12125	0.85	-1.0
2,591,063	+		DZA65_RS12125	0.85	-0.7
2,591,064	-		DZA65_RS12125	0.85	+0.0
2,591,064	-		DZA65_RS12125	0.85	-0.2
2,591,209	+				+0.6
2,591,240	+				-0.7
2,591,241	-				-1.1
2,591,241	-				-1.5
2,591,247	-				-1.7
2,591,247	-				+1.7
2,591,344	+				+0.2
2,591,345	-				+1.3
2,591,345	-				-0.5
2,591,345	-				-1.0
2,591,354	+				+0.0
2,591,354	+				+0.0
2,591,354	+				-0.1
2,591,354	+				-0.9
2,591,354	+				-0.7
2,591,355	-				+1.1
2,591,355	-				-0.2
2,591,355	-				+0.2
2,591,355	-				+0.0
2,591,355	-				+0.0
2,591,355	-				-0.5
2,591,535	-		DZA65_RS12130	0.40	-0.3
2,591,540	+		DZA65_RS12130	0.41	-1.0
2,591,540	+		DZA65_RS12130	0.41	+1.3
2,591,540	+		DZA65_RS12130	0.41	+0.2
2,591,541	-		DZA65_RS12130	0.41	-1.8
2,591,541	-		DZA65_RS12130	0.41	-1.1
2,591,541	-		DZA65_RS12130	0.41	-1.4
2,591,614	-		DZA65_RS12130	0.58	+0.6
2,591,626	+		DZA65_RS12130	0.60	-0.1
2,591,626	+		DZA65_RS12130	0.60	+0.5
2,591,626	+		DZA65_RS12130	0.60	-0.6
2,591,626	+		DZA65_RS12130	0.60	-0.8
2,591,627	-		DZA65_RS12130	0.61	-1.5
2,591,866	+		DZA65_RS12135	0.36	+0.0
2,591,867	-		DZA65_RS12135	0.36	+2.4
2,591,885	-		DZA65_RS12135	0.44	-0.3
2,591,893	+		DZA65_RS12135	0.48	-0.7
2,591,893	+		DZA65_RS12135	0.48	-1.7
2,591,893	+		DZA65_RS12135	0.48	-0.4
2,591,893	+		DZA65_RS12135	0.48	+0.2
2,591,893	+		DZA65_RS12135	0.48	-0.1
2,591,893	+		DZA65_RS12135	0.48	-0.8
2,591,893	+		DZA65_RS12135	0.48	+0.0
2,591,893	+		DZA65_RS12135	0.48	-0.5
2,591,893	+		DZA65_RS12135	0.48	-1.3
2,591,894	-		DZA65_RS12135	0.48	-2.0
2,591,894	-		DZA65_RS12135	0.48	-0.3
2,591,894	-		DZA65_RS12135	0.48	-0.7
2,591,894	-		DZA65_RS12135	0.48	+0.6
2,591,894	-		DZA65_RS12135	0.48	-2.0
2,591,894	-		DZA65_RS12135	0.48	-1.5
2,591,894	-		DZA65_RS12135	0.48	-1.0
2,591,894	-		DZA65_RS12135	0.48	-1.0
2,591,897	+		DZA65_RS12135	0.50	+1.4
2,591,993	+				+0.0
2,591,993	+				-1.0
2,591,994	-				-1.0
2,591,994	-				-0.3
2,591,994	-				-0.1
2,591,994	-				+0.3
2,591,994	-				-0.1
2,591,994	-				-0.0
2,591,994	-				-0.2
2,592,019	+				-1.4
2,592,041	-				-1.1
2,592,041	-				+0.5
2,592,041	-				-0.5
2,592,041	-				-0.4
2,592,046	+				-1.0
2,592,046	+				-1.3
2,592,046	+				-2.0
2,592,046	+				+0.8
2,592,047	-				-0.7
2,592,047	-				-0.7
2,592,047	-				-1.2
2,592,047	-				+0.4
2,592,047	-				-1.3
2,592,047	-				+3.2
2,592,055	+				-2.5
2,592,055	+				+0.5
2,592,055	+				+0.4
2,592,055	+				+1.0
2,592,055	+				-0.4
2,592,055	+				-0.7
2,592,056	-				-0.1
2,592,056	-				-0.4
2,592,056	-				-0.5
2,592,056	-				-0.7
2,592,056	-				+1.1
2,592,056	-				-0.6
2,592,163	-				-1.2
2,592,210	+				+0.2
2,592,210	+				-0.5
2,592,210	+				+0.3
2,592,211	-				+0.5
2,592,211	-				-0.1
2,592,254	+				-1.0
2,592,290	+				-0.1
2,592,290	+				-0.5
2,592,290	+				+0.7
2,592,291	-				+1.5
2,592,291	-				+1.9
2,592,291	-				+0.3
2,592,364	+				+0.8
2,592,365	-				+0.9