Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11165

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,365,770	+		DZA65_RS11160	0.37	+0.1
2,365,792	-		DZA65_RS11160	0.40	+0.0
2,365,821	-		DZA65_RS11160	0.44	+1.0
2,365,851	+		DZA65_RS11160	0.48	+0.7
2,365,851	+		DZA65_RS11160	0.48	+1.0
2,365,852	-		DZA65_RS11160	0.48	-0.2
2,365,920	+		DZA65_RS11160	0.57	+0.0
2,365,921	-		DZA65_RS11160	0.57	-1.2
2,365,984	+		DZA65_RS11160	0.66	-0.5
2,365,985	-		DZA65_RS11160	0.66	+1.2
2,366,019	+		DZA65_RS11160	0.70	-1.7
2,366,020	-		DZA65_RS11160	0.70	+0.3
2,366,020	-		DZA65_RS11160	0.70	-0.7
2,366,062	-		DZA65_RS11160	0.76	+0.7
2,366,062	-		DZA65_RS11160	0.76	+0.6
2,366,181	+				+0.3
2,366,306	+				+0.5
2,366,306	+				-0.6
2,366,306	+				+0.3
2,366,306	+				+0.1
2,366,307	-				+0.0
2,366,316	+				+1.2
2,366,316	+				-1.0
2,366,316	+				-0.2
2,366,317	-				+1.3
2,366,317	-				+0.3
2,366,320	+				-0.2
2,366,320	+				+0.6
2,366,320	+				+1.6
2,366,320	+				+0.9
2,366,320	+				-0.4
2,366,320	+				-0.1
2,366,320	+				+0.1
2,366,321	-				-0.7
2,366,321	-				+2.2
2,366,321	-				+0.9
2,366,321	-				-0.1
2,366,321	-				-2.5
2,366,321	-				+0.8
2,366,321	-				-2.8
2,366,390	+				-0.2
2,366,390	+				-0.3
2,366,391	-				-0.3
2,366,391	-				-1.6
2,366,414	-				-1.4
2,366,414	-				-0.4
2,366,459	+				+1.6
2,366,459	+				-0.5
2,366,460	-				+0.6
2,366,460	-				+0.8
2,366,460	-				-0.7
2,366,460	-				-0.1
2,366,469	-				+0.8
2,366,491	+				-1.1
2,366,511	-				-1.0
2,366,546	+				+1.0
2,366,568	+				+0.9
2,366,588	+				-0.3
2,366,588	+				-0.6
2,366,588	+				+0.5
2,366,588	+				+0.6
2,366,589	-				+0.6
2,366,589	-				+0.1
2,366,642	-				-0.8
2,366,672	+		DZA65_RS11165	0.10	+0.5
2,366,672	+		DZA65_RS11165	0.10	+0.4
2,366,672	+		DZA65_RS11165	0.10	-0.1
2,366,673	-		DZA65_RS11165	0.10	-1.1
2,366,673	-		DZA65_RS11165	0.10	+0.8
2,366,674	+		DZA65_RS11165	0.11	-1.8
2,366,674	+		DZA65_RS11165	0.11	-0.2
2,366,675	-		DZA65_RS11165	0.11	+0.8
2,366,675	-		DZA65_RS11165	0.11	-1.3
2,366,675	-		DZA65_RS11165	0.11	-0.6
2,366,691	+		DZA65_RS11165	0.12	-2.0
2,366,713	+		DZA65_RS11165	0.14	+0.7
2,366,713	+		DZA65_RS11165	0.14	-1.6
2,366,713	+		DZA65_RS11165	0.14	+0.3
2,366,714	-		DZA65_RS11165	0.14	+0.5
2,366,731	-		DZA65_RS11165	0.15	-0.3
2,366,807	+		DZA65_RS11165	0.21	+0.0
2,366,807	+		DZA65_RS11165	0.21	-1.3
2,366,807	+		DZA65_RS11165	0.21	-0.6
2,366,807	+		DZA65_RS11165	0.21	-0.4
2,366,808	-		DZA65_RS11165	0.21	-1.8
2,366,808	-		DZA65_RS11165	0.21	-0.2
2,366,808	-		DZA65_RS11165	0.21	-0.4
2,366,808	-		DZA65_RS11165	0.21	+0.8
2,366,839	-		DZA65_RS11165	0.24	-0.3
2,366,874	-		DZA65_RS11165	0.27	+0.4
2,366,949	+		DZA65_RS11165	0.33	+3.2
2,366,949	+		DZA65_RS11165	0.33	-2.8
2,366,949	+		DZA65_RS11165	0.33	+0.5
2,366,950	-		DZA65_RS11165	0.33	+0.3
2,366,950	-		DZA65_RS11165	0.33	+0.7
2,366,957	+		DZA65_RS11165	0.34	+1.3
2,366,957	+		DZA65_RS11165	0.34	-2.3
2,366,958	-		DZA65_RS11165	0.34	-0.1
2,366,958	-		DZA65_RS11165	0.34	-1.0
2,366,985	+		DZA65_RS11165	0.36	+0.5
2,366,985	+		DZA65_RS11165	0.36	+0.7
2,367,070	+		DZA65_RS11165	0.43	-0.3
2,367,070	+		DZA65_RS11165	0.43	-0.4
2,367,071	-		DZA65_RS11165	0.43	-1.2
2,367,071	-		DZA65_RS11165	0.43	-0.2
2,367,071	-		DZA65_RS11165	0.43	-0.3
2,367,071	-		DZA65_RS11165	0.43	+1.6
2,367,071	-		DZA65_RS11165	0.43	+0.3
2,367,123	+		DZA65_RS11165	0.47	+0.3
2,367,123	+		DZA65_RS11165	0.47	-0.5
2,367,123	+		DZA65_RS11165	0.47	+1.0
2,367,123	+		DZA65_RS11165	0.47	+0.3
2,367,123	+		DZA65_RS11165	0.47	-1.8
2,367,124	-		DZA65_RS11165	0.47	-2.0
2,367,125	+		DZA65_RS11165	0.47	-1.1
2,367,125	+		DZA65_RS11165	0.47	-1.3
2,367,125	+		DZA65_RS11165	0.47	-0.1
2,367,125	+		DZA65_RS11165	0.47	+0.6
2,367,125	+		DZA65_RS11165	0.47	-0.8
2,367,125	+		DZA65_RS11165	0.47	-1.8
2,367,125	+		DZA65_RS11165	0.47	-1.2
2,367,126	-		DZA65_RS11165	0.47	+0.5
2,367,126	-		DZA65_RS11165	0.47	+0.3
2,367,126	-		DZA65_RS11165	0.47	-0.4
2,367,134	+		DZA65_RS11165	0.48	-1.6
2,367,135	-		DZA65_RS11165	0.48	+0.9
2,367,135	-		DZA65_RS11165	0.48	+0.6
2,367,135	-		DZA65_RS11165	0.48	-1.0
2,367,233	+		DZA65_RS11165	0.56	+1.0
2,367,234	-		DZA65_RS11165	0.56	-0.5
2,367,236	+		DZA65_RS11165	0.56	-1.2
2,367,312	-		DZA65_RS11165	0.63	-2.3
2,367,334	+		DZA65_RS11165	0.64	-0.2
2,367,334	+		DZA65_RS11165	0.64	-0.1
2,367,334	+		DZA65_RS11165	0.64	+0.2
2,367,334	+		DZA65_RS11165	0.64	-0.2
2,367,335	-		DZA65_RS11165	0.64	-0.4
2,367,335	-		DZA65_RS11165	0.64	-1.0
2,367,335	-		DZA65_RS11165	0.64	+1.3
2,367,343	-		DZA65_RS11165	0.65	+0.4
2,367,369	+		DZA65_RS11165	0.67	+0.0
2,367,370	-		DZA65_RS11165	0.67	-1.0
2,367,578	+		DZA65_RS11165	0.84	-1.5
2,367,578	+		DZA65_RS11165	0.84	-0.3
2,367,578	+		DZA65_RS11165	0.84	+1.2
2,367,578	+		DZA65_RS11165	0.84	-0.3
2,367,579	-		DZA65_RS11165	0.84	-1.4
2,367,597	+		DZA65_RS11165	0.86	-0.3
2,367,597	+		DZA65_RS11165	0.86	+0.7
2,367,597	+		DZA65_RS11165	0.86	+0.5
2,367,598	-		DZA65_RS11165	0.86	-1.1
2,367,689	-				+0.1
2,367,689	-				-0.1
2,367,741	+				+0.7
2,367,747	+				+1.3
2,367,747	+				-0.1
2,367,747	+				-0.6
2,367,747	+				+0.4
2,367,747	+				-0.9
2,367,748	-				+0.6
2,367,827	+				+1.5
2,367,828	-				+0.2
2,367,828	-				-0.4
2,367,944	+		DZA65_RS11170	0.19	+0.2
2,367,944	+		DZA65_RS11170	0.19	+0.4
2,367,944	+		DZA65_RS11170	0.19	+1.0
2,367,944	+		DZA65_RS11170	0.19	-1.8
2,367,944	+		DZA65_RS11170	0.19	+0.7
2,367,945	-		DZA65_RS11170	0.19	-1.1
2,367,945	-		DZA65_RS11170	0.19	+0.0
2,367,969	+		DZA65_RS11170	0.22	-0.2
2,367,969	+		DZA65_RS11170	0.22	+0.4
2,368,312	+		DZA65_RS11170	0.63	-1.2
2,368,326	+		DZA65_RS11170	0.65	+1.3
2,368,326	+		DZA65_RS11170	0.65	-1.8
2,368,327	-		DZA65_RS11170	0.65	-1.0
2,368,327	-		DZA65_RS11170	0.65	-0.6
2,368,334	+		DZA65_RS11170	0.66	-1.0
2,368,334	+		DZA65_RS11170	0.66	-0.4
2,368,334	+		DZA65_RS11170	0.66	-0.1
2,368,335	-		DZA65_RS11170	0.66	-0.1
2,368,335	-		DZA65_RS11170	0.66	+1.6
2,368,335	-		DZA65_RS11170	0.66	-1.2
2,368,335	-		DZA65_RS11170	0.66	-0.4
2,368,338	+		DZA65_RS11170	0.66	-0.1
2,368,339	-				+0.6
2,368,392	+		DZA65_RS11170	0.73	+0.3
2,368,392	+		DZA65_RS11170	0.73	+0.2
2,368,392	+		DZA65_RS11170	0.73	-0.3
2,368,393	-		DZA65_RS11170	0.73	-0.4
2,368,423	-		DZA65_RS11170	0.76	-0.5
2,368,429	+		DZA65_RS11170	0.77	+1.2
2,368,429	+		DZA65_RS11170	0.77	-0.3
2,368,429	+		DZA65_RS11170	0.77	-1.6
2,368,551	+				-0.4
2,368,551	+				-0.1
2,368,551	+				+1.6
2,368,551	+				-2.3
2,368,552	-				+0.8
2,368,552	-				-2.0
2,368,652	+				-1.2
2,368,652	+				+0.0
2,368,661	+				+1.6
2,368,708	+				+0.4
2,368,757	+				-2.0
2,368,758	-				-0.9
2,368,758	-				+0.3
2,368,758	-				+0.7
2,368,763	+				+0.1
2,368,763	+				+0.7
2,368,763	+				-0.7
2,368,763	+				+0.6
2,368,763	+				-1.0
2,368,763	+				+1.2
2,368,763	+				-0.3
2,368,763	+				-2.3
2,368,763	+				+0.9
2,368,764	-				+1.0
2,368,764	-				-1.8
2,368,764	-				-2.3
2,368,764	-				-0.8
2,368,764	-				+0.2
2,368,764	-				+0.5
2,368,764	-				-0.6
2,368,764	-				+0.0