Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11145

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,361,636	+				+3.2
2,361,636	+				+0.7
2,361,637	-				-1.8
2,361,637	-				+0.4
2,361,666	-		DZA65_RS11140	0.12	-0.3
2,361,708	+		DZA65_RS11140	0.17	+0.0
2,361,784	-		DZA65_RS11140	0.25	+0.2
2,361,910	+		DZA65_RS11140	0.39	+0.0
2,361,911	-		DZA65_RS11140	0.39	+1.1
2,362,026	-		DZA65_RS11140	0.52	+0.4
2,362,067	+		DZA65_RS11140	0.56	-2.3
2,362,067	+		DZA65_RS11140	0.56	-0.3
2,362,067	+		DZA65_RS11140	0.56	-3.0
2,362,067	+		DZA65_RS11140	0.56	+1.1
2,362,068	-		DZA65_RS11140	0.56	+0.0
2,362,068	-		DZA65_RS11140	0.56	+0.3
2,362,068	-		DZA65_RS11140	0.56	-0.1
2,362,068	-		DZA65_RS11140	0.56	-1.5
2,362,110	+		DZA65_RS11140	0.61	-0.2
2,362,110	+		DZA65_RS11140	0.61	-1.6
2,362,110	+		DZA65_RS11140	0.61	-0.5
2,362,110	+		DZA65_RS11140	0.61	-0.4
2,362,110	+		DZA65_RS11140	0.61	+0.7
2,362,110	+		DZA65_RS11140	0.61	+0.2
2,362,110	+		DZA65_RS11140	0.61	+2.6
2,362,111	-		DZA65_RS11140	0.61	-0.9
2,362,111	-		DZA65_RS11140	0.61	+0.4
2,362,111	-		DZA65_RS11140	0.61	+1.8
2,362,111	-		DZA65_RS11140	0.61	-0.4
2,362,111	-		DZA65_RS11140	0.61	-1.5
2,362,113	+		DZA65_RS11140	0.61	+0.0
2,362,113	+		DZA65_RS11140	0.61	+0.3
2,362,114	-		DZA65_RS11140	0.61	+0.6
2,362,114	-		DZA65_RS11140	0.61	+0.5
2,362,114	-		DZA65_RS11140	0.61	+0.2
2,362,174	+		DZA65_RS11140	0.68	+0.4
2,362,204	+		DZA65_RS11140	0.71	+0.3
2,362,205	-		DZA65_RS11140	0.71	-0.3
2,362,205	-		DZA65_RS11140	0.71	+1.3
2,362,212	+		DZA65_RS11140	0.72	+0.6
2,362,219	+		DZA65_RS11140	0.73	-0.3
2,362,219	+		DZA65_RS11140	0.73	-2.0
2,362,219	+		DZA65_RS11140	0.73	-2.4
2,362,219	+		DZA65_RS11140	0.73	+0.0
2,362,219	+		DZA65_RS11140	0.73	+0.7
2,362,220	-		DZA65_RS11140	0.73	-1.8
2,362,220	-		DZA65_RS11140	0.73	-1.0
2,362,220	-		DZA65_RS11140	0.73	-0.5
2,362,220	-		DZA65_RS11140	0.73	+0.6
2,362,220	-		DZA65_RS11140	0.73	-0.4
2,362,333	+		DZA65_RS11140	0.85	+0.0
2,362,333	+		DZA65_RS11140	0.85	+0.4
2,362,334	-		DZA65_RS11140	0.85	-1.0
2,362,334	-		DZA65_RS11140	0.85	-3.2
2,362,334	-		DZA65_RS11140	0.85	+0.3
2,362,334	-		DZA65_RS11140	0.85	-0.5
2,362,334	-		DZA65_RS11140	0.85	-1.0
2,362,360	-		DZA65_RS11140	0.88	+0.7
2,362,362	+		DZA65_RS11140	0.88	-0.3
2,362,363	-		DZA65_RS11140	0.89	+0.9
2,362,431	+				-0.1
2,362,431	+				+2.0
2,362,431	+				+1.2
2,362,431	+				-0.4
2,362,432	-				-0.2
2,362,432	-				+0.6
2,362,432	-				+0.7
2,362,432	-				+1.7
2,362,486	-				-0.1
2,362,496	+				-0.8
2,362,557	-				+1.7
2,362,622	+				-0.4
2,362,630	+				+0.4
2,362,630	+				+0.2
2,362,631	-				-0.7
2,362,725	-		DZA65_RS11145	0.12	-0.7
2,362,776	+		DZA65_RS11145	0.16	+0.3
2,362,843	-		DZA65_RS11145	0.21	-1.6
2,362,843	-		DZA65_RS11145	0.21	-0.4
2,362,930	+		DZA65_RS11145	0.28	+1.0
2,362,935	-		DZA65_RS11145	0.29	+0.1
2,363,081	+		DZA65_RS11145	0.41	-0.7
2,363,082	-		DZA65_RS11145	0.41	-0.1
2,363,091	+		DZA65_RS11145	0.42	-2.6
2,363,151	+		DZA65_RS11145	0.47	+0.4
2,363,151	+		DZA65_RS11145	0.47	+0.0
2,363,165	+		DZA65_RS11145	0.48	-3.3
2,363,247	-		DZA65_RS11145	0.54	-0.8
2,363,247	-		DZA65_RS11145	0.54	-0.6
2,363,321	+		DZA65_RS11145	0.61	-0.8
2,363,352	+		DZA65_RS11145	0.63	-0.3
2,363,392	+		DZA65_RS11145	0.66	-1.6
2,363,392	+		DZA65_RS11145	0.66	-1.6
2,363,392	+		DZA65_RS11145	0.66	-1.2
2,363,393	-		DZA65_RS11145	0.66	-1.8
2,363,393	-		DZA65_RS11145	0.66	-0.3
2,363,470	+		DZA65_RS11145	0.73	-0.6
2,363,763	+				+0.6
2,363,763	+				+0.4
2,363,764	-				+0.0
2,363,764	-				+0.7
2,363,764	-				+1.0
2,363,764	-				+0.4
2,363,783	+				+0.5
2,363,783	+				-1.6
2,363,783	+				-0.4
2,363,814	+				-0.6
2,363,815	-				+0.0
2,363,827	-				-1.3
2,363,932	+				-0.4
2,363,933	-				+1.7
2,363,933	-				+0.0
2,363,949	-				-0.3
2,363,996	+				+0.1
2,363,996	+				+0.2
2,364,093	+		DZA65_RS11150	0.16	-0.6
2,364,095	+		DZA65_RS11150	0.16	-1.0
2,364,095	+		DZA65_RS11150	0.16	-0.7
2,364,095	+		DZA65_RS11150	0.16	-2.4
2,364,095	+		DZA65_RS11150	0.16	-0.5
2,364,096	-		DZA65_RS11150	0.17	+0.0
2,364,140	+		DZA65_RS11150	0.23	-0.8
2,364,255	+		DZA65_RS11150	0.40	-0.5
2,364,255	+		DZA65_RS11150	0.40	-0.1
2,364,255	+		DZA65_RS11150	0.40	-0.3
2,364,256	-		DZA65_RS11150	0.40	-1.1
2,364,256	-		DZA65_RS11150	0.40	-1.6
2,364,256	-		DZA65_RS11150	0.40	+0.1
2,364,256	-		DZA65_RS11150	0.40	-0.5
2,364,336	-		DZA65_RS11150	0.52	+0.0
2,364,361	-		DZA65_RS11150	0.56	-0.6
2,364,361	-		DZA65_RS11150	0.56	+0.7
2,364,425	+		DZA65_RS11150	0.65	-1.8
2,364,425	+		DZA65_RS11150	0.65	+0.1
2,364,425	+		DZA65_RS11150	0.65	-0.9
2,364,426	-		DZA65_RS11150	0.66	+0.8
2,364,426	-		DZA65_RS11150	0.66	-1.0
2,364,426	-		DZA65_RS11150	0.66	-2.8
2,364,426	-		DZA65_RS11150	0.66	+0.4
2,364,522	+		DZA65_RS11150	0.80	+2.1
2,364,522	+		DZA65_RS11150	0.80	+1.3
2,364,522	+		DZA65_RS11150	0.80	-0.4
2,364,522	+		DZA65_RS11150	0.80	+2.2
2,364,523	-		DZA65_RS11150	0.80	-0.8
2,364,523	-		DZA65_RS11150	0.80	-0.2
2,364,523	-		DZA65_RS11150	0.80	+0.2
2,364,621	+				-1.6
2,364,621	+				-0.4
2,364,622	-				+0.5
2,364,622	-				-0.2
2,364,622	-				-0.3
2,364,641	+				-0.5
2,364,641	+				-0.1
2,364,642	-				+0.1
2,364,654	+				+0.7
2,364,654	+				-1.0
2,364,654	+				+0.7
2,364,655	-				-0.3