Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11090

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,348,288	+				-0.3
2,348,288	+				-0.5
2,348,288	+				-1.0
2,348,289	-				+0.0
2,348,289	-				-0.3
2,348,329	+		DZA65_RS11085	0.11	-0.8
2,348,329	+		DZA65_RS11085	0.11	-2.8
2,348,329	+		DZA65_RS11085	0.11	-0.6
2,348,329	+		DZA65_RS11085	0.11	+0.8
2,348,329	+		DZA65_RS11085	0.11	-0.7
2,348,329	+		DZA65_RS11085	0.11	-1.0
2,348,330	-		DZA65_RS11085	0.12	-0.6
2,348,330	-		DZA65_RS11085	0.12	+2.0
2,348,330	-		DZA65_RS11085	0.12	-0.7
2,348,330	-		DZA65_RS11085	0.12	+0.3
2,348,330	-		DZA65_RS11085	0.12	+0.0
2,348,334	+		DZA65_RS11085	0.12	-2.1
2,348,335	-		DZA65_RS11085	0.12	-1.6
2,348,626	+		DZA65_RS11085	0.42	-0.5
2,348,627	-		DZA65_RS11085	0.42	+0.5
2,348,654	+		DZA65_RS11085	0.44	-0.7
2,348,654	+		DZA65_RS11085	0.44	-1.0
2,348,654	+		DZA65_RS11085	0.44	+0.9
2,348,654	+		DZA65_RS11085	0.44	+0.5
2,348,655	-		DZA65_RS11085	0.44	+0.8
2,348,655	-		DZA65_RS11085	0.44	+1.9
2,348,655	-		DZA65_RS11085	0.44	+1.3
2,348,655	-				-0.3
2,348,719	+		DZA65_RS11085	0.51	-1.0
2,348,719	+		DZA65_RS11085	0.51	+0.6
2,348,720	-		DZA65_RS11085	0.51	-1.1
2,348,758	+		DZA65_RS11085	0.55	-0.5
2,348,759	-		DZA65_RS11085	0.55	-0.2
2,348,812	+		DZA65_RS11085	0.60	+1.5
2,348,813	-		DZA65_RS11085	0.60	+1.6
2,348,941	+		DZA65_RS11085	0.73	+0.5
2,349,004	-		DZA65_RS11085	0.80	+0.2
2,349,004	-		DZA65_RS11085	0.80	-0.5
2,349,042	+		DZA65_RS11085	0.84	-0.8
2,349,042	+		DZA65_RS11085	0.84	-2.0
2,349,047	+		DZA65_RS11085	0.84	-1.5
2,349,047	+		DZA65_RS11085	0.84	-0.3
2,349,047	+		DZA65_RS11085	0.84	+0.8
2,349,047	+		DZA65_RS11085	0.84	-1.5
2,349,047	+		DZA65_RS11085	0.84	+0.4
2,349,047	+		DZA65_RS11085	0.84	+0.6
2,349,047	+		DZA65_RS11085	0.84	+0.4
2,349,047	+		DZA65_RS11085	0.84	+0.7
2,349,047	+		DZA65_RS11085	0.84	-1.0
2,349,047	+		DZA65_RS11085	0.84	+0.5
2,349,047	+		DZA65_RS11085	0.84	+0.2
2,349,047	+		DZA65_RS11085	0.84	+1.6
2,349,047	+		DZA65_RS11085	0.84	-0.7
2,349,047	+		DZA65_RS11085	0.84	-0.3
2,349,047	+		DZA65_RS11085	0.84	+0.5
2,349,047	+		DZA65_RS11085	0.84	+0.4
2,349,047	+		DZA65_RS11085	0.84	+0.3
2,349,047	+		DZA65_RS11085	0.84	-3.2
2,349,048	-		DZA65_RS11085	0.84	-0.4
2,349,048	-		DZA65_RS11085	0.84	+0.9
2,349,048	-		DZA65_RS11085	0.84	+0.4
2,349,048	-		DZA65_RS11085	0.84	+1.2
2,349,048	-		DZA65_RS11085	0.84	-1.0
2,349,048	-		DZA65_RS11085	0.84	+0.0
2,349,048	-		DZA65_RS11085	0.84	+1.6
2,349,048	-		DZA65_RS11085	0.84	+0.0
2,349,048	-		DZA65_RS11085	0.84	+0.0
2,349,048	-		DZA65_RS11085	0.84	+0.6
2,349,106	+				-2.8
2,349,106	+				+1.3
2,349,106	+				+0.4
2,349,107	-				-2.3
2,349,107	-				+1.0
2,349,125	+				-1.0
2,349,125	+				+0.0
2,349,125	+				-1.6
2,349,125	+				+0.6
2,349,125	+				-3.0
2,349,126	-				-0.2
2,349,126	-				+1.8
2,349,126	-				+0.3
2,349,126	-				+0.0
2,349,126	-				+0.7
2,349,174	-				+0.3
2,349,238	+				-0.3
2,349,273	+				-0.5
2,349,273	+				-0.6
2,349,273	+				+0.5
2,349,273	+				-0.1
2,349,273	+				-2.0
2,349,274	-				-0.3
2,349,274	-				+0.4
2,349,274	-				+0.2
2,349,274	-				+0.1
2,349,274	-				+1.2
2,349,274	-				+0.9
2,349,274	-				+0.6
2,349,274	-				+0.2
2,349,337	-				-0.3
2,349,352	+				-0.0
2,349,407	+		DZA65_RS11090	0.14	-0.9
2,349,407	+		DZA65_RS11090	0.14	+0.0
2,349,408	-		DZA65_RS11090	0.15	+1.0
2,349,408	-		DZA65_RS11090	0.15	-0.3
2,349,408	-		DZA65_RS11090	0.15	+2.1
2,349,417	+		DZA65_RS11090	0.15	-1.3
2,349,417	+		DZA65_RS11090	0.15	+0.2
2,349,417	+		DZA65_RS11090	0.15	-2.3
2,349,417	+		DZA65_RS11090	0.15	+0.3
2,349,417	+		DZA65_RS11090	0.15	+0.5
2,349,418	-				+1.3
2,349,418	-		DZA65_RS11090	0.16	-0.1
2,349,434	+		DZA65_RS11090	0.17	+0.4
2,349,435	-		DZA65_RS11090	0.17	+0.1
2,349,470	+		DZA65_RS11090	0.21	-0.7
2,349,526	-		DZA65_RS11090	0.27	-1.0
2,349,529	-		DZA65_RS11090	0.27	+0.5
2,349,574	-		DZA65_RS11090	0.32	+0.9
2,349,681	-		DZA65_RS11090	0.43	+2.2
2,349,950	+		DZA65_RS11090	0.72	+0.4
2,349,950	+		DZA65_RS11090	0.72	-0.1
2,349,950	+		DZA65_RS11090	0.72	+2.3
2,350,000	+		DZA65_RS11090	0.77	+2.3
2,350,062	+		DZA65_RS11090	0.83	+0.9
2,350,062	+		DZA65_RS11090	0.83	-1.1
2,350,063	-		DZA65_RS11090	0.83	+0.4
2,350,218	+				-0.2
2,350,235	+				+1.0
2,350,239	+				+0.0
2,350,239	+				-0.4
2,350,243	-				+1.7
2,350,243	-				+0.7
2,350,311	+				-1.3
2,350,312	-				+1.1
2,350,329	+				+0.7
2,350,329	+				+1.0
2,350,329	+				-0.6
2,350,329	+				+0.4
2,350,329	+				+0.1
2,350,329	+				+1.1
2,350,329	+				+0.4
2,350,329	+				+0.2
2,350,329	+				-1.2
2,350,329	+				-0.8
2,350,329	+				-2.0
2,350,330	-				+0.1
2,350,330	-				-0.7
2,350,330	-				+0.0
2,350,331	+				-1.0
2,350,331	+				+1.1
2,350,331	+				-0.4
2,350,331	+				-1.6
2,350,331	+				-0.6
2,350,331	+				-0.3
2,350,331	+				+1.5
2,350,331	+				+0.5
2,350,332	-				+0.5
2,350,332	-				+0.5
2,350,332	-				-1.4
2,350,334	+				-0.4
2,350,334	+				+1.0
2,350,334	+				-0.5
2,350,372	+				+0.4
2,350,377	+				+0.0
2,350,378	-				-0.2
2,350,407	+				-0.5
2,350,408	-				-1.6
2,350,408	-				+0.4
2,350,408	-				+0.0
2,350,429	+				-1.0
2,350,429	+				-0.5
2,350,429	+				+0.0
2,350,429	+				+0.6
2,350,429	+				-1.3
2,350,429	+				-1.6
2,350,429	+				-0.5
2,350,429	+				-0.5
2,350,429	+				-0.2
2,350,429	+				-0.8
2,350,430	-				+0.6
2,350,430	-				+1.2
2,350,430	-				-0.7
2,350,431	+				+0.6
2,350,432	-				-0.7
2,350,432	-				-0.5
2,350,432	-				-0.3
2,350,443	+				-1.2
2,350,444	-				-0.4
2,350,466	-				-0.1
2,350,471	+				+0.8
2,350,510	-				+0.6
2,350,776	+		DZA65_RS11095	0.33	-0.2
2,350,777	-		DZA65_RS11095	0.33	-0.9
2,350,777	-		DZA65_RS11095	0.33	+0.8
2,350,870	+		DZA65_RS11095	0.42	-2.6
2,350,870	+		DZA65_RS11095	0.42	-0.4
2,350,870	+		DZA65_RS11095	0.42	-0.1
2,350,871	-		DZA65_RS11095	0.42	-2.6
2,350,871	-		DZA65_RS11095	0.42	-0.4
2,350,871	-		DZA65_RS11095	0.42	-0.3
2,350,955	-		DZA65_RS11095	0.50	-1.2
2,351,062	+		DZA65_RS11095	0.60	+0.2
2,351,073	+		DZA65_RS11095	0.61	+0.8
2,351,073	+		DZA65_RS11095	0.61	+0.4
2,351,073	+		DZA65_RS11095	0.61	+0.1
2,351,074	-		DZA65_RS11095	0.61	-0.9
2,351,074	-		DZA65_RS11095	0.61	+0.9
2,351,074	-		DZA65_RS11095	0.61	+0.4
2,351,078	+		DZA65_RS11095	0.62	-1.8
2,351,079	-		DZA65_RS11095	0.62	-2.0
2,351,083	+		DZA65_RS11095	0.62	+0.0
2,351,084	-		DZA65_RS11095	0.62	+0.5
2,351,143	+		DZA65_RS11095	0.68	+0.1
2,351,143	+		DZA65_RS11095	0.68	+1.0
2,351,143	+		DZA65_RS11095	0.68	+1.3
2,351,143	+		DZA65_RS11095	0.68	+0.2
2,351,144	-		DZA65_RS11095	0.68	+0.1
2,351,145	+		DZA65_RS11095	0.68	-1.0
2,351,145	+		DZA65_RS11095	0.68	+0.9
2,351,170	+		DZA65_RS11095	0.70	-0.0
2,351,170	+		DZA65_RS11095	0.70	-0.5
2,351,170	+		DZA65_RS11095	0.70	+0.1
2,351,171	-		DZA65_RS11095	0.70	-2.6
2,351,171	-		DZA65_RS11095	0.70	-0.6
2,351,171	-		DZA65_RS11095	0.70	-1.0
2,351,171	-		DZA65_RS11095	0.70	-1.0
2,351,171	-		DZA65_RS11095	0.70	-1.0
2,351,171	-		DZA65_RS11095	0.70	-0.7