Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10250

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,169,587	+				+0.1
2,169,588	-				-0.2
2,169,588	-				-0.3
2,169,654	+		DZA65_RS10245	0.18	+1.5
2,169,722	+		DZA65_RS10245	0.29	-0.2
2,169,723	-		DZA65_RS10245	0.29	-0.5
2,169,723	-		DZA65_RS10245	0.29	+0.9
2,169,736	+		DZA65_RS10245	0.31	-0.4
2,169,736	+		DZA65_RS10245	0.31	-0.9
2,169,737	-		DZA65_RS10245	0.31	+0.2
2,169,900	+		DZA65_RS10245	0.58	-1.4
2,169,900	+		DZA65_RS10245	0.58	+1.4
2,169,934	+		DZA65_RS10245	0.64	-0.7
2,169,935	-		DZA65_RS10245	0.64	+0.8
2,169,980	-		DZA65_RS10245	0.72	-0.2
2,169,997	+		DZA65_RS10245	0.74	-1.1
2,169,998	-		DZA65_RS10245	0.75	-1.5
2,170,173	-				-0.5
2,170,202	+				-0.6
2,170,330	-				-0.2
2,170,403	-				+0.4
2,170,422	-				+1.4
2,170,438	+				+0.3
2,170,438	+				-0.3
2,170,439	-				+0.4
2,170,439	-				-0.2
2,170,484	+				+1.6
2,170,487	+				+0.8
2,170,528	+				-1.2
2,170,528	+				+0.4
2,170,528	+				+0.1
2,170,528	+				-2.7
2,170,528	+				+0.4
2,170,528	+				-0.3
2,170,528	+				-0.6
2,170,528	+				-0.7
2,170,528	+				-0.8
2,170,528	+				-1.6
2,170,529	-				-0.8
2,170,529	-				-0.1
2,170,529	-				-0.9
2,170,529	-				-0.5
2,170,529	-				+0.1
2,170,529	-				-0.1
2,170,529	-				+1.9
2,170,529	-				+0.6
2,170,529	-				-0.7
2,170,529	-				-1.3
2,170,529	-				-1.1
2,170,529	-				-3.2
2,170,529	-				-3.1
2,170,529	-				+0.9
2,170,529	-				-0.5
2,170,530	+				-1.5
2,170,530	+				-0.8
2,170,530	+				-0.8
2,170,530	+				-1.5
2,170,530	+				-0.0
2,170,530	+				+0.6
2,170,530	+				-0.1
2,170,530	+				-0.0
2,170,530	+				-0.1
2,170,530	+				-2.5
2,170,531	-				+0.7
2,170,531	-				+1.2
2,170,531	-				+0.1
2,170,531	-				+0.1
2,170,531	-				+0.8
2,170,531	-				-1.8
2,170,531	-				+1.0
2,170,548	+				+0.7
2,170,549	-				-0.2
2,170,563	+				-0.0
2,170,563	+				+0.1
2,170,563	+				-0.0
2,170,564	-				-2.2
2,170,564	-				+1.2
2,170,810	-		DZA65_RS10250	0.17	-0.3
2,170,963	-		DZA65_RS10250	0.26	-1.9
2,170,963	-		DZA65_RS10250	0.26	-0.9
2,170,963	-		DZA65_RS10250	0.26	-0.8
2,171,073	+		DZA65_RS10250	0.32	+1.4
2,171,073	+		DZA65_RS10250	0.32	+0.3
2,171,074	-		DZA65_RS10250	0.33	-1.8
2,171,250	+		DZA65_RS10250	0.43	+1.9
2,171,296	+		DZA65_RS10250	0.46	+2.1
2,171,296	+		DZA65_RS10250	0.46	-0.9
2,171,297	-		DZA65_RS10250	0.46	+0.8
2,171,297	-		DZA65_RS10250	0.46	-0.9
2,171,297	-		DZA65_RS10250	0.46	+0.2
2,171,297	-		DZA65_RS10250	0.46	+0.7
2,171,297	-		DZA65_RS10250	0.46	-2.2
2,171,297	-		DZA65_RS10250	0.46	-0.9
2,171,297	-		DZA65_RS10250	0.46	-1.9
2,171,337	-		DZA65_RS10250	0.48	+1.0
2,171,415	+		DZA65_RS10250	0.53	-1.1
2,171,416	-		DZA65_RS10250	0.53	+0.1
2,171,480	+		DZA65_RS10250	0.57	-0.7
2,171,591	+		DZA65_RS10250	0.64	-1.1
2,171,645	-		DZA65_RS10250	0.67	-0.5
2,171,645	-		DZA65_RS10250	0.67	+0.9
2,171,645	-		DZA65_RS10250	0.67	+0.1
2,171,645	-		DZA65_RS10250	0.67	-1.9
2,171,650	-		DZA65_RS10250	0.67	+0.7
2,171,650	-		DZA65_RS10250	0.67	-0.3
2,171,650	-		DZA65_RS10250	0.67	-0.1
2,171,650	-		DZA65_RS10250	0.67	-1.3
2,171,650	-		DZA65_RS10250	0.67	+0.1
2,171,673	+		DZA65_RS10250	0.68	-0.4
2,171,673	+		DZA65_RS10250	0.68	-0.5
2,171,673	+		DZA65_RS10250	0.68	-0.9
2,171,673	+		DZA65_RS10250	0.68	-1.1
2,171,674	-		DZA65_RS10250	0.69	-1.1
2,171,674	-		DZA65_RS10250	0.69	+1.8
2,171,674	-		DZA65_RS10250	0.69	+0.3
2,171,683	-		DZA65_RS10250	0.69	-0.3
2,171,688	+		DZA65_RS10250	0.69	-0.2
2,171,853	+		DZA65_RS10250	0.79	-0.8
2,171,937	-		DZA65_RS10250	0.84	-0.3
2,171,983	-		DZA65_RS10250	0.87	+0.1
2,171,983	-		DZA65_RS10250	0.87	+0.9
2,171,983	-		DZA65_RS10250	0.87	-0.4
2,172,238	-				+0.4
2,172,238	-				-2.7
2,172,308	+		DZA65_RS10255	0.17	-0.7
2,172,309	-		DZA65_RS10255	0.17	-0.3
2,172,309	-		DZA65_RS10255	0.17	+0.0
2,172,322	-		DZA65_RS10255	0.20	+0.1
2,172,322	-		DZA65_RS10255	0.20	+0.1
2,172,390	+		DZA65_RS10255	0.35	+0.7
2,172,390	+		DZA65_RS10255	0.35	+1.1
2,172,390	+		DZA65_RS10255	0.35	-1.9
2,172,390	+		DZA65_RS10255	0.35	-0.7
2,172,391	-		DZA65_RS10255	0.36	+1.1
2,172,431	+		DZA65_RS10255	0.45	-0.1
2,172,431	+		DZA65_RS10255	0.45	+0.6
2,172,431	+		DZA65_RS10255	0.45	+0.2
2,172,431	+		DZA65_RS10255	0.45	+0.4
2,172,432	-		DZA65_RS10255	0.45	-0.5
2,172,485	-		DZA65_RS10255	0.57	-1.3
2,172,485	-		DZA65_RS10255	0.57	-0.3
2,172,487	+		DZA65_RS10255	0.58	-0.4
2,172,487	+		DZA65_RS10255	0.58	-2.7
2,172,487	+		DZA65_RS10255	0.58	-1.5
2,172,487	+		DZA65_RS10255	0.58	-0.1
2,172,499	+		DZA65_RS10255	0.60	+0.1
2,172,499	+		DZA65_RS10255	0.60	+0.1
2,172,500	-		DZA65_RS10255	0.61	-0.9
2,172,500	-		DZA65_RS10255	0.61	+0.8
2,172,549	-		DZA65_RS10255	0.72	-1.2
2,172,566	-		DZA65_RS10255	0.76	+1.7
2,172,654	-				+0.5
2,172,659	-				+1.5
2,172,673	-				+0.1
2,172,703	+				-0.8
2,172,703	+				-0.1
2,172,704	-				+0.2
2,172,704	-				-2.1
2,172,704	-				+1.5
2,172,704	-				-0.2
2,172,773	+				+0.2
2,172,794	-				+0.5
2,172,803	+				+0.4
2,172,804	-				+0.5
2,172,845	+				-1.0
2,172,870	+		DZA65_RS10260	0.12	+0.3
2,172,870	+		DZA65_RS10260	0.12	-0.5
2,172,870	+		DZA65_RS10260	0.12	+0.3
2,172,874	-		DZA65_RS10260	0.12	+0.1
2,173,051	+		DZA65_RS10260	0.28	+0.3
2,173,101	+		DZA65_RS10260	0.32	+1.7
2,173,101	+		DZA65_RS10260	0.32	+1.1
2,173,102	-		DZA65_RS10260	0.32	+1.1