Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10215

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,158,759	+				+1.3
2,158,759	+				-1.5
2,158,759	+				-1.7
2,158,759	+				-0.1
2,158,760	-				-1.2
2,158,760	-				-0.9
2,158,823	+				+0.9
2,158,823	+				+0.7
2,158,823	+				-0.9
2,158,824	-				-0.1
2,158,824	-				-0.0
2,158,824	-				+0.1
2,158,824	-				-0.8
2,158,824	-				+0.9
2,158,827	+				-1.9
2,158,828	-				-0.1
2,158,828	-				-0.0
2,158,828	-				-2.1
2,158,863	+				-1.1
2,158,863	+				+0.1
2,158,864	-				-0.9
2,158,879	+				-0.9
2,158,880	-				+0.5
2,158,880	-				-0.8
2,158,891	+		DZA65_RS10210	0.10	-1.2
2,158,891	+		DZA65_RS10210	0.10	-0.7
2,158,892	-		DZA65_RS10210	0.10	+0.5
2,158,892	-		DZA65_RS10210	0.10	-2.5
2,158,892	-		DZA65_RS10210	0.10	-0.5
2,158,900	+		DZA65_RS10210	0.11	+0.1
2,158,900	+		DZA65_RS10210	0.11	+0.3
2,158,900	+		DZA65_RS10210	0.11	+0.7
2,158,900	+		DZA65_RS10210	0.11	-0.1
2,158,900	+		DZA65_RS10210	0.11	-1.1
2,158,900	+		DZA65_RS10210	0.11	-1.1
2,158,900	+		DZA65_RS10210	0.11	+1.3
2,158,900	+		DZA65_RS10210	0.11	-0.7
2,158,900	+		DZA65_RS10210	0.11	+0.3
2,158,900	+		DZA65_RS10210	0.11	-0.5
2,158,900	+		DZA65_RS10210	0.11	-1.4
2,158,900	+		DZA65_RS10210	0.11	+0.5
2,158,900	+		DZA65_RS10210	0.11	-0.7
2,158,901	-		DZA65_RS10210	0.11	-0.6
2,158,901	-		DZA65_RS10210	0.11	+0.1
2,158,901	-		DZA65_RS10210	0.11	-0.3
2,158,901	-		DZA65_RS10210	0.11	+0.0
2,158,901	-				-0.5
2,158,942	+		DZA65_RS10210	0.16	-0.6
2,158,942	+		DZA65_RS10210	0.16	+0.6
2,158,943	-		DZA65_RS10210	0.16	+1.1
2,158,943	-		DZA65_RS10210	0.16	+1.5
2,158,943	-		DZA65_RS10210	0.16	-0.0
2,158,943	-		DZA65_RS10210	0.16	+0.8
2,158,944	+		DZA65_RS10210	0.16	-0.2
2,158,945	-		DZA65_RS10210	0.16	+0.1
2,158,945	-		DZA65_RS10210	0.16	-0.5
2,158,945	-		DZA65_RS10210	0.16	-0.9
2,158,945	-		DZA65_RS10210	0.16	-0.3
2,158,975	+		DZA65_RS10210	0.19	-0.3
2,158,976	-		DZA65_RS10210	0.20	-0.7
2,158,976	-		DZA65_RS10210	0.20	-2.7
2,159,058	+		DZA65_RS10210	0.29	-1.7
2,159,058	+		DZA65_RS10210	0.29	-0.4
2,159,059	-		DZA65_RS10210	0.29	-0.2
2,159,059	-				-0.9
2,159,059	-		DZA65_RS10210	0.29	+1.3
2,159,059	-		DZA65_RS10210	0.29	+0.1
2,159,179	-		DZA65_RS10210	0.42	+1.0
2,159,226	+		DZA65_RS10210	0.47	-0.5
2,159,226	+		DZA65_RS10210	0.47	+0.3
2,159,226	+		DZA65_RS10210	0.47	-0.9
2,159,226	+		DZA65_RS10210	0.47	-0.2
2,159,226	+		DZA65_RS10210	0.47	-0.8
2,159,226	+		DZA65_RS10210	0.47	+0.1
2,159,227	-		DZA65_RS10210	0.47	+1.8
2,159,227	-		DZA65_RS10210	0.47	-0.3
2,159,227	-		DZA65_RS10210	0.47	+0.4
2,159,227	-		DZA65_RS10210	0.47	-0.2
2,159,227	-		DZA65_RS10210	0.47	-0.1
2,159,227	-		DZA65_RS10210	0.47	-0.2
2,159,227	-		DZA65_RS10210	0.47	+0.9
2,159,227	-		DZA65_RS10210	0.47	-0.2
2,159,376	+		DZA65_RS10210	0.64	+0.7
2,159,381	+		DZA65_RS10210	0.65	+0.4
2,159,382	-		DZA65_RS10210	0.65	-1.6
2,159,430	+		DZA65_RS10210	0.70	+0.1
2,159,488	+		DZA65_RS10210	0.77	+1.1
2,159,488	+		DZA65_RS10210	0.77	+0.1
2,159,489	-		DZA65_RS10210	0.77	+2.7
2,159,504	+		DZA65_RS10210	0.78	+1.5
2,159,505	-		DZA65_RS10210	0.78	-1.7
2,159,539	+		DZA65_RS10210	0.82	-0.7
2,159,540	-		DZA65_RS10210	0.82	-0.4
2,159,540	-		DZA65_RS10210	0.82	+0.6
2,159,545	+		DZA65_RS10210	0.83	+0.3
2,159,545	+		DZA65_RS10210	0.83	-0.2
2,159,596	+		DZA65_RS10210	0.89	+0.7
2,159,596	+		DZA65_RS10210	0.89	+2.2
2,159,597	-		DZA65_RS10210	0.89	-0.3
2,159,597	-		DZA65_RS10210	0.89	-0.4
2,159,597	-		DZA65_RS10210	0.89	+0.8
2,159,597	-		DZA65_RS10210	0.89	+2.4
2,159,623	+				+0.5
2,159,799	-				+3.8
2,159,825	+		DZA65_RS10215	0.11	-1.2
2,159,825	+		DZA65_RS10215	0.11	-0.3
2,159,825	+		DZA65_RS10215	0.11	+0.1
2,159,825	+		DZA65_RS10215	0.11	-2.2
2,159,825	+		DZA65_RS10215	0.11	+0.1
2,159,825	+		DZA65_RS10215	0.11	-1.5
2,159,825	+		DZA65_RS10215	0.11	+0.4
2,159,826	-		DZA65_RS10215	0.11	-0.4
2,159,826	-		DZA65_RS10215	0.11	+0.2
2,159,826	-		DZA65_RS10215	0.11	+0.4
2,160,040	+		DZA65_RS10215	0.39	+0.0
2,160,141	+		DZA65_RS10215	0.52	-1.2
2,160,246	+		DZA65_RS10215	0.65	+1.5
2,160,246	+		DZA65_RS10215	0.65	+0.6
2,160,246	+		DZA65_RS10215	0.65	-1.7
2,160,246	+		DZA65_RS10215	0.65	+0.1
2,160,247	-		DZA65_RS10215	0.65	-0.5
2,160,247	-		DZA65_RS10215	0.65	-0.5
2,160,247	-		DZA65_RS10215	0.65	-0.4
2,160,247	-		DZA65_RS10215	0.65	-1.5
2,160,247	-		DZA65_RS10215	0.65	+0.8
2,160,273	-		DZA65_RS10215	0.69	-0.7
2,160,479	-				+1.2
2,160,479	-				+0.1
2,160,479	-				+1.3
2,160,486	+				-0.7
2,160,516	+				+0.1
2,160,516	+				-1.2
2,160,521	+				+0.7
2,160,552	+				-1.5
2,160,552	+				+0.8
2,160,579	+				-0.3
2,160,580	-				-0.6
2,160,580	-				-1.3
2,160,580	-				+1.9
2,160,632	+				+1.4
2,160,632	+				-0.9
2,160,632	+				-1.9
2,160,636	+				-1.1
2,160,719	+				-2.2
2,160,719	+				+0.5
2,160,946	+		DZA65_RS10220	0.34	-0.7
2,160,949	+		DZA65_RS10220	0.34	+0.4
2,160,949	+		DZA65_RS10220	0.34	-1.4
2,160,949	+		DZA65_RS10220	0.34	-2.7
2,160,949	+		DZA65_RS10220	0.34	-1.2
2,161,115	+		DZA65_RS10220	0.54	+0.8
2,161,307	+		DZA65_RS10220	0.78	+0.1
2,161,307	+		DZA65_RS10220	0.78	+0.6
2,161,307	+		DZA65_RS10220	0.78	-0.1
2,161,307	+		DZA65_RS10220	0.78	-1.9
2,161,307	+		DZA65_RS10220	0.78	-0.2
2,161,307	+		DZA65_RS10220	0.78	+0.1
2,161,311	+		DZA65_RS10220	0.78	+0.8
2,161,311	+		DZA65_RS10220	0.78	-0.7
2,161,370	+		DZA65_RS10220	0.85	-0.4
2,161,406	+		DZA65_RS10220	0.90	+0.6
2,161,417	+				-0.9
2,161,426	+				+1.1
2,161,426	+				+1.3
2,161,435	+				-0.5
2,161,435	+				+0.6