Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS10125

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,142,820	-				+0.7
2,142,995	+		DZA65_RS10115	0.85	-0.8
2,142,995	+		DZA65_RS10115	0.85	-1.1
2,142,996	-		DZA65_RS10115	0.85	+1.7
2,143,096	+				+0.6
2,143,096	+				-1.2
2,143,210	-				+0.5
2,143,210	-				+0.9
2,143,234	+				-0.8
2,143,234	+				+1.3
2,143,234	+				+0.5
2,143,235	-				+0.2
2,143,235	-				+0.8
2,143,547	+		DZA65_RS10120	0.58	-0.3
2,143,547	+		DZA65_RS10120	0.58	+0.1
2,143,547	+		DZA65_RS10120	0.58	+1.1
2,143,548	-		DZA65_RS10120	0.59	+0.1
2,143,548	-		DZA65_RS10120	0.59	+1.1
2,143,655	+		DZA65_RS10120	0.79	-1.7
2,143,655	+		DZA65_RS10120	0.79	-0.6
2,143,655	+		DZA65_RS10120	0.79	-1.2
2,143,656	-		DZA65_RS10120	0.79	+0.7
2,143,656	-		DZA65_RS10120	0.79	-1.1
2,143,656	-		DZA65_RS10120	0.79	-1.2
2,143,656	-		DZA65_RS10120	0.79	-0.1
2,143,656	-		DZA65_RS10120	0.79	-0.1
2,143,656	-		DZA65_RS10120	0.79	-0.4
2,143,656	-		DZA65_RS10120	0.79	+0.1
2,143,656	-		DZA65_RS10120	0.79	+1.4
2,143,656	-		DZA65_RS10120	0.79	+4.7
2,143,657	+		DZA65_RS10120	0.79	-1.7
2,143,657	+		DZA65_RS10120	0.79	-0.1
2,143,657	+		DZA65_RS10120	0.79	+1.2
2,143,657	+		DZA65_RS10120	0.79	-0.5
2,143,657	+		DZA65_RS10120	0.79	-1.7
2,143,657	+		DZA65_RS10120	0.79	-0.5
2,143,658	-		DZA65_RS10120	0.79	-0.4
2,143,736	+				+0.4
2,143,736	+				+1.1
2,143,737	-				-2.6
2,143,737	-				-0.1
2,143,737	-				+0.7
2,143,754	+				-0.6
2,143,755	-				-1.1
2,143,799	+				-0.9
2,143,799	+				-0.1
2,143,799	+				+0.3
2,143,799	+				-0.5
2,143,877	+		DZA65_RS10125	0.15	-0.6
2,143,878	-		DZA65_RS10125	0.15	+0.4
2,143,878	-		DZA65_RS10125	0.15	-0.4
2,143,878	-		DZA65_RS10125	0.15	+0.1
2,143,878	-		DZA65_RS10125	0.15	+0.1
2,143,878	-		DZA65_RS10125	0.15	+0.2
2,143,914	+		DZA65_RS10125	0.19	+0.5
2,143,943	+		DZA65_RS10125	0.22	-0.5
2,143,943	+		DZA65_RS10125	0.22	-0.4
2,143,944	-		DZA65_RS10125	0.22	-0.4
2,143,944	-		DZA65_RS10125	0.22	-0.5
2,143,944	-		DZA65_RS10125	0.22	+0.1
2,144,052	-		DZA65_RS10125	0.34	-2.5
2,144,105	+		DZA65_RS10125	0.40	-0.7
2,144,106	-		DZA65_RS10125	0.40	-1.1
2,144,109	+		DZA65_RS10125	0.40	+2.9
2,144,115	+		DZA65_RS10125	0.41	-0.7
2,144,242	-		DZA65_RS10125	0.55	+0.4
2,144,356	+		DZA65_RS10125	0.67	-3.1
2,144,357	-		DZA65_RS10125	0.67	-0.3
2,144,371	+		DZA65_RS10125	0.69	+0.1
2,144,372	-		DZA65_RS10125	0.69	-1.7
2,144,415	-		DZA65_RS10125	0.74	-0.1
2,144,432	+		DZA65_RS10125	0.76	+0.6
2,144,432	+		DZA65_RS10125	0.76	-0.6
2,144,433	-		DZA65_RS10125	0.76	-0.6
2,144,462	+		DZA65_RS10125	0.79	-0.1
2,144,462	+		DZA65_RS10125	0.79	+0.9
2,144,463	-		DZA65_RS10125	0.79	-0.2
2,144,463	-		DZA65_RS10125	0.79	-0.2
2,144,463	-		DZA65_RS10125	0.79	-1.2
2,144,481	-		DZA65_RS10125	0.81	-1.6
2,144,481	-		DZA65_RS10125	0.81	+0.3
2,144,481	-		DZA65_RS10125	0.81	-0.1
2,144,481	-		DZA65_RS10125	0.81	-1.2
2,144,519	+		DZA65_RS10125	0.85	-0.7
2,144,549	+		DZA65_RS10125	0.89	-1.9
2,144,550	-		DZA65_RS10125	0.89	-0.7
2,144,583	+				+1.1
2,144,661	+				+0.5
2,144,661	+				+0.8
2,144,661	+				-2.7
2,144,662	-				-1.2
2,144,662	-				+0.2
2,144,664	+				-0.5
2,144,748	+				-1.0
2,144,748	+				+0.2
2,144,748	+				+0.8
2,144,749	-				-0.5
2,144,749	-				-0.6
2,144,749	-				+0.9
2,144,749	-				+0.1
2,144,749	-				+0.8
2,144,757	+				-0.8
2,144,758	-				+0.5
2,144,758	-				-0.5
2,144,809	-				+0.2
2,144,809	-				+0.5
2,144,821	+				-0.8
2,144,822	-				-0.8
2,144,834	+				-0.2
2,144,834	+				-2.2
2,144,835	-				+1.1
2,144,855	+				+0.9
2,144,856	-				-2.5
2,144,885	+				+0.6
2,144,885	+				-0.3
2,144,885	+				-0.6
2,144,885	+				+0.7
2,144,885	+				+0.5
2,144,886	-				-0.7
2,144,886	-				+0.2
2,144,886	-				-1.0
2,144,886	-				+0.4
2,144,886	-				+0.8
2,144,886	-				-0.6
2,144,886	-				+0.7
2,144,892	+				+0.9
2,144,898	+				-1.2
2,144,899	-				+0.1
2,144,899	-				+1.7
2,144,899	-				-0.4
2,144,911	+				+0.1
2,144,923	-				+0.4
2,144,926	-				-0.1
2,144,926	-				-0.9
2,144,935	-				-0.5
2,144,935	-				+0.1
2,144,935	-				-0.3
2,144,935	-				+0.9
2,144,978	+		DZA65_RS10130	0.13	-1.2
2,144,978	+		DZA65_RS10130	0.13	+0.6
2,144,978	+		DZA65_RS10130	0.13	+0.8
2,144,979	-		DZA65_RS10130	0.13	-2.2
2,144,979	-		DZA65_RS10130	0.13	-0.0
2,144,979	-		DZA65_RS10130	0.13	+0.5
2,144,979	-		DZA65_RS10130	0.13	-0.2
2,144,979	-		DZA65_RS10130	0.13	+1.1
2,144,987	-		DZA65_RS10130	0.14	+0.1
2,144,987	-		DZA65_RS10130	0.14	+1.2
2,144,987	-		DZA65_RS10130	0.14	+2.1
2,144,987	-		DZA65_RS10130	0.14	+1.0
2,144,987	-		DZA65_RS10130	0.14	-0.3
2,144,987	-		DZA65_RS10130	0.14	+0.4
2,145,220	+		DZA65_RS10130	0.45	+1.1
2,145,220	+		DZA65_RS10130	0.45	-1.2
2,145,220	+		DZA65_RS10130	0.45	-0.4
2,145,221	-		DZA65_RS10130	0.46	-0.7
2,145,221	-		DZA65_RS10130	0.46	+0.2
2,145,221	-		DZA65_RS10130	0.46	-1.5
2,145,221	-		DZA65_RS10130	0.46	+0.0
2,145,221	-		DZA65_RS10130	0.46	-1.0
2,145,221	-		DZA65_RS10130	0.46	+1.2
2,145,221	-		DZA65_RS10130	0.46	-0.1
2,145,221	-		DZA65_RS10130	0.46	-0.1
2,145,221	-		DZA65_RS10130	0.46	-0.5
2,145,221	-		DZA65_RS10130	0.46	-0.1
2,145,221	-		DZA65_RS10130	0.46	-0.2
2,145,221	-		DZA65_RS10130	0.46	-1.5
2,145,223	+		DZA65_RS10130	0.46	-0.2
2,145,223	+		DZA65_RS10130	0.46	+0.6
2,145,223	+		DZA65_RS10130	0.46	-0.4
2,145,223	+		DZA65_RS10130	0.46	+0.8
2,145,223	+		DZA65_RS10130	0.46	+0.7
2,145,224	-		DZA65_RS10130	0.46	-1.9
2,145,224	-		DZA65_RS10130	0.46	-1.5
2,145,224	-		DZA65_RS10130	0.46	+1.4
2,145,224	-		DZA65_RS10130	0.46	+0.2
2,145,224	-		DZA65_RS10130	0.46	+0.1
2,145,225	+		DZA65_RS10130	0.46	+0.4
2,145,355	+		DZA65_RS10130	0.63	+0.7
2,145,355	+		DZA65_RS10130	0.63	+0.9
2,145,355	+		DZA65_RS10130	0.63	-0.2
2,145,355	+		DZA65_RS10130	0.63	-0.1
2,145,355	+		DZA65_RS10130	0.63	+1.1
2,145,356	-		DZA65_RS10130	0.63	-0.6
2,145,356	-		DZA65_RS10130	0.63	+0.1
2,145,356	-		DZA65_RS10130	0.63	-0.0
2,145,356	-		DZA65_RS10130	0.63	+0.3
2,145,356	-		DZA65_RS10130	0.63	-0.3
2,145,419	+		DZA65_RS10130	0.72	+0.2
2,145,419	+		DZA65_RS10130	0.72	-1.1
2,145,419	+		DZA65_RS10130	0.72	-0.8
2,145,419	+		DZA65_RS10130	0.72	-2.7
2,145,420	-		DZA65_RS10130	0.72	+0.4
2,145,420	-		DZA65_RS10130	0.72	+0.7
2,145,486	+		DZA65_RS10130	0.81	+3.1
2,145,569	+				-0.1
2,145,569	+				+0.4
2,145,569	+				+1.5
2,145,569	+				-3.6
2,145,570	-				+1.1
2,145,570	-				+2.7