Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS09840

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
2,073,196	+		DZA65_RS09830	0.70	-1.1
2,073,196	+		DZA65_RS09830	0.70	-0.5
2,073,247	+		DZA65_RS09830	0.77	-0.5
2,073,247	+		DZA65_RS09830	0.77	-0.5
2,073,248	-		DZA65_RS09830	0.78	+0.2
2,073,248	-		DZA65_RS09830	0.78	+0.5
2,073,248	-		DZA65_RS09830	0.78	+0.9
2,073,248	-		DZA65_RS09830	0.78	-0.8
2,073,254	+		DZA65_RS09830	0.78	-0.7
2,073,254	+		DZA65_RS09830	0.78	+0.5
2,073,254	+		DZA65_RS09830	0.78	-0.1
2,073,254	+		DZA65_RS09830	0.78	+0.4
2,073,255	-		DZA65_RS09830	0.79	-1.1
2,073,255	-		DZA65_RS09830	0.79	-0.3
2,073,255	-		DZA65_RS09830	0.79	+0.1
2,073,255	-		DZA65_RS09830	0.79	+0.4
2,073,255	-		DZA65_RS09830	0.79	+1.0
2,073,258	+		DZA65_RS09830	0.79	+0.8
2,073,432	-				-0.2
2,073,461	+				-0.5
2,073,461	+				-1.3
2,073,461	+				+1.1
2,073,462	-				+1.1
2,073,462	-				-1.1
2,073,462	-				-0.1
2,073,464	+				+0.1
2,073,480	+		DZA65_RS09835	0.11	+1.6
2,073,480	+		DZA65_RS09835	0.11	+0.7
2,073,480	+		DZA65_RS09835	0.11	-0.1
2,073,480	+		DZA65_RS09835	0.11	-0.9
2,073,481	-		DZA65_RS09835	0.12	+1.1
2,073,481	-				+1.1
2,073,501	+		DZA65_RS09835	0.14	-0.7
2,073,501	+		DZA65_RS09835	0.14	+1.1
2,073,501	+		DZA65_RS09835	0.14	-0.6
2,073,501	+		DZA65_RS09835	0.14	-0.9
2,073,502	-		DZA65_RS09835	0.15	+0.2
2,073,502	-		DZA65_RS09835	0.15	-1.3
2,073,502	-		DZA65_RS09835	0.15	-1.0
2,073,502	-		DZA65_RS09835	0.15	-0.6
2,073,682	+		DZA65_RS09835	0.40	+0.9
2,073,683	-		DZA65_RS09835	0.40	+0.1
2,073,683	-				+1.4
2,073,683	-		DZA65_RS09835	0.40	-2.1
2,073,683	-		DZA65_RS09835	0.40	-0.4
2,073,762	+		DZA65_RS09835	0.51	+1.3
2,073,771	+		DZA65_RS09835	0.52	+0.8
2,073,771	+		DZA65_RS09835	0.52	-0.3
2,073,771	+		DZA65_RS09835	0.52	-0.1
2,073,772	-		DZA65_RS09835	0.52	+0.1
2,073,772	-		DZA65_RS09835	0.52	+1.2
2,073,772	-		DZA65_RS09835	0.52	-0.6
2,073,772	-		DZA65_RS09835	0.52	+0.8
2,073,865	+		DZA65_RS09835	0.65	-0.6
2,073,866	-		DZA65_RS09835	0.65	+0.9
2,073,866	-		DZA65_RS09835	0.65	+0.3
2,073,915	+		DZA65_RS09835	0.72	-0.8
2,073,915	+		DZA65_RS09835	0.72	-0.1
2,073,915	+		DZA65_RS09835	0.72	+1.8
2,073,916	-		DZA65_RS09835	0.72	-0.1
2,073,916	-		DZA65_RS09835	0.72	-0.3
2,073,916	-		DZA65_RS09835	0.72	+0.9
2,073,916	-		DZA65_RS09835	0.72	-0.1
2,073,919	+		DZA65_RS09835	0.73	+1.8
2,073,919	+		DZA65_RS09835	0.73	+0.4
2,074,132	-				-0.7
2,074,152	+				+0.1
2,074,153	-				-2.2
2,074,153	-				-1.1
2,074,165	-				-0.6
2,074,263	+		DZA65_RS09840	0.18	+0.3
2,074,263	+		DZA65_RS09840	0.18	-1.7
2,074,263	+		DZA65_RS09840	0.18	+0.1
2,074,264	-		DZA65_RS09840	0.18	-0.1
2,074,396	-		DZA65_RS09840	0.36	-0.7
2,074,426	+		DZA65_RS09840	0.40	+0.1
2,074,426	+		DZA65_RS09840	0.40	+0.4
2,074,426	+		DZA65_RS09840	0.40	-0.8
2,074,426	+		DZA65_RS09840	0.40	-0.9
2,074,427	-		DZA65_RS09840	0.41	-0.7
2,074,427	-		DZA65_RS09840	0.41	+0.9
2,074,427	-		DZA65_RS09840	0.41	+0.3
2,074,427	-		DZA65_RS09840	0.41	+0.5
2,074,548	+		DZA65_RS09840	0.57	+1.5
2,074,551	+		DZA65_RS09840	0.58	-0.8
2,074,551	+		DZA65_RS09840	0.58	-0.9
2,074,552	-		DZA65_RS09840	0.58	-0.8
2,074,552	-		DZA65_RS09840	0.58	-3.2
2,074,621	-		DZA65_RS09840	0.67	-2.5
2,074,651	+		DZA65_RS09840	0.71	-0.2
2,074,675	+		DZA65_RS09840	0.74	-0.0
2,074,676	-		DZA65_RS09840	0.75	-0.1
2,074,676	-		DZA65_RS09840	0.75	-0.9
2,074,676	-		DZA65_RS09840	0.75	+1.1
2,074,823	+				+0.1
2,074,970	+		DZA65_RS09845	0.12	-0.3
2,074,970	+		DZA65_RS09845	0.12	+0.2
2,074,970	+		DZA65_RS09845	0.12	-1.4
2,074,971	-		DZA65_RS09845	0.13	-1.1
2,074,971	-		DZA65_RS09845	0.13	+1.9
2,074,971	-		DZA65_RS09845	0.13	-0.2
2,075,058	+		DZA65_RS09845	0.25	+4.7
2,075,189	-		DZA65_RS09845	0.43	+0.9
2,075,189	-		DZA65_RS09845	0.43	+0.2
2,075,316	+		DZA65_RS09845	0.60	+0.3
2,075,337	-		DZA65_RS09845	0.63	+0.7
2,075,337	-		DZA65_RS09845	0.63	-0.3
2,075,415	+		DZA65_RS09845	0.74	-0.5
2,075,415	+		DZA65_RS09845	0.74	+0.3
2,075,416	-		DZA65_RS09845	0.74	-0.4
2,075,476	+		DZA65_RS09845	0.82	-0.2
2,075,476	+		DZA65_RS09845	0.82	-1.0
2,075,573	+				-1.3
2,075,574	-				-1.1
2,075,574	-				+1.6
2,075,583	+				-1.5
2,075,583	+				+1.1
2,075,584	-				-2.5
2,075,584	-				-0.2
2,075,584	-				-0.3
2,075,584	-				+0.4
2,075,593	+				+0.3
2,075,593	+				+0.8
2,075,601	+				-0.1
2,075,623	-		DZA65_RS22860	0.10	+0.1
2,075,645	-		DZA65_RS22860	0.16	+0.1
2,075,658	+		DZA65_RS22860	0.19	-2.9
2,075,659	-		DZA65_RS22860	0.20	-0.9
2,075,659	-		DZA65_RS22860	0.20	+0.4
2,075,659	-		DZA65_RS22860	0.20	-1.3
2,075,694	-		DZA65_RS22860	0.28	-0.7
2,075,702	+		DZA65_RS22860	0.31	-1.1
2,075,702	+		DZA65_RS22860	0.31	-0.5
2,075,702	+		DZA65_RS22860	0.31	-1.3
2,075,702	+		DZA65_RS22860	0.31	+1.7
2,075,702	+		DZA65_RS22860	0.31	+1.1
2,075,702	+		DZA65_RS22860	0.31	-0.8
2,075,703	-		DZA65_RS22860	0.31	+0.1
2,075,703	-		DZA65_RS22860	0.31	+1.2
2,075,703	-		DZA65_RS22860	0.31	-0.2
2,075,703	-		DZA65_RS22860	0.31	-0.6
2,075,703	-		DZA65_RS22860	0.31	-1.2
2,075,703	-		DZA65_RS22860	0.31	+0.3
2,075,797	+		DZA65_RS22860	0.55	-0.7
2,075,797	+				+0.9
2,075,798	-		DZA65_RS22860	0.55	-0.9
2,075,814	-		DZA65_RS22860	0.59	-1.7
2,075,822	-		DZA65_RS22860	0.61	+1.4
2,075,822	-		DZA65_RS22860	0.61	+0.7
2,075,843	-		DZA65_RS22860	0.66	-1.1
2,075,843	-		DZA65_RS22860	0.66	+1.3
2,075,846	-		DZA65_RS22860	0.67	+1.2