Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08735

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,849,014	+		DZA65_RS08730	0.49	+0.1
1,849,014	+		DZA65_RS08730	0.49	-0.4
1,849,168	+		DZA65_RS08730	0.59	-0.3
1,849,214	+		DZA65_RS08730	0.62	+0.6
1,849,227	+		DZA65_RS08730	0.63	+0.7
1,849,266	-		DZA65_RS08730	0.65	-0.1
1,849,350	+		DZA65_RS08730	0.71	-2.6
1,849,364	+		DZA65_RS08730	0.72	+0.4
1,849,364	+		DZA65_RS08730	0.72	-1.1
1,849,364	+		DZA65_RS08730	0.72	-2.7
1,849,365	-				+0.1
1,849,365	-		DZA65_RS08730	0.72	-2.7
1,849,365	-		DZA65_RS08730	0.72	+0.1
1,849,365	-		DZA65_RS08730	0.72	+0.8
1,849,365	-		DZA65_RS08730	0.72	+0.6
1,849,543	+		DZA65_RS08730	0.83	-0.3
1,849,543	+		DZA65_RS08730	0.83	+0.5
1,849,543	+		DZA65_RS08730	0.83	-0.6
1,849,544	-		DZA65_RS08730	0.84	-0.3
1,849,579	+		DZA65_RS08730	0.86	-0.3
1,849,579	+		DZA65_RS08730	0.86	-0.9
1,849,579	+		DZA65_RS08730	0.86	-1.9
1,849,579	+		DZA65_RS08730	0.86	+0.5
1,849,579	+		DZA65_RS08730	0.86	-1.2
1,849,580	-		DZA65_RS08730	0.86	-2.2
1,849,580	-		DZA65_RS08730	0.86	+1.1
1,849,600	+		DZA65_RS08730	0.87	+0.9
1,849,600	+		DZA65_RS08730	0.87	+3.5
1,849,693	+				-0.2
1,849,694	-				+0.1
1,849,731	-				-0.2
1,849,731	-				-0.7
1,849,792	+				+0.8
1,849,792	+				+0.1
1,849,793	-				-0.4
1,849,813	+				-0.2
1,849,813	+				-0.1
1,849,814	-				-0.1
1,849,814	-				+0.3
1,849,814	-				-0.1
1,849,851	+				+0.3
1,849,851	+				-0.4
1,849,852	-				-0.1
1,849,894	-				+0.1
1,849,909	+				+0.1
1,849,909	+				+1.1
1,849,910	-				+0.1
1,849,921	+				-0.9
1,849,921	+				+1.1
1,849,922	-				-1.4
1,850,060	+		DZA65_RS08735	0.19	+1.9
1,850,060	+		DZA65_RS08735	0.19	+0.5
1,850,060	+		DZA65_RS08735	0.19	+1.0
1,850,060	+		DZA65_RS08735	0.19	+1.1
1,850,061	-		DZA65_RS08735	0.19	+0.9
1,850,061	-		DZA65_RS08735	0.19	+0.0
1,850,061	-		DZA65_RS08735	0.19	+0.6
1,850,061	-		DZA65_RS08735	0.19	+1.1
1,850,063	-		DZA65_RS08735	0.20	-0.1
1,850,131	-		DZA65_RS08735	0.27	-0.0
1,850,137	-		DZA65_RS08735	0.28	+1.3
1,850,137	-		DZA65_RS08735	0.28	+0.6
1,850,137	-		DZA65_RS08735	0.28	+1.4
1,850,168	-		DZA65_RS08735	0.31	-0.1
1,850,223	+		DZA65_RS08735	0.37	+0.1
1,850,223	+		DZA65_RS08735	0.37	+1.4
1,850,223	+		DZA65_RS08735	0.37	+0.6
1,850,320	+		DZA65_RS08735	0.48	-0.1
1,850,320	+		DZA65_RS08735	0.48	-0.4
1,850,320	+		DZA65_RS08735	0.48	-0.5
1,850,320	+		DZA65_RS08735	0.48	+0.7
1,850,320	+		DZA65_RS08735	0.48	-0.2
1,850,320	+		DZA65_RS08735	0.48	-0.4
1,850,320	+		DZA65_RS08735	0.48	-0.3
1,850,320	+		DZA65_RS08735	0.48	+1.9
1,850,320	+		DZA65_RS08735	0.48	-0.1
1,850,320	+		DZA65_RS08735	0.48	+0.1
1,850,321	-		DZA65_RS08735	0.48	+0.9
1,850,321	-		DZA65_RS08735	0.48	-0.5
1,850,321	-		DZA65_RS08735	0.48	-0.7
1,850,321	-		DZA65_RS08735	0.48	+0.6
1,850,321	-		DZA65_RS08735	0.48	+0.5
1,850,321	-		DZA65_RS08735	0.48	-0.8
1,850,348	-		DZA65_RS08735	0.51	+0.4
1,850,359	+		DZA65_RS08735	0.53	+1.2
1,850,389	-		DZA65_RS08735	0.56	-0.5
1,850,417	+		DZA65_RS08735	0.59	-1.0
1,850,417	+		DZA65_RS08735	0.59	-0.1
1,850,417	+		DZA65_RS08735	0.59	-1.3
1,850,418	-		DZA65_RS08735	0.59	-0.3
1,850,420	-		DZA65_RS08735	0.59	-0.1
1,850,420	-		DZA65_RS08735	0.59	+1.0
1,850,437	+		DZA65_RS08735	0.61	+0.1
1,850,438	-		DZA65_RS08735	0.61	-0.7
1,850,441	+		DZA65_RS08735	0.62	-0.5
1,850,441	+		DZA65_RS08735	0.62	+0.3
1,850,442	-		DZA65_RS08735	0.62	+0.0
1,850,458	+		DZA65_RS08735	0.64	-0.9
1,850,502	-		DZA65_RS08735	0.68	+0.1
1,850,506	+		DZA65_RS08735	0.69	-0.4
1,850,506	+		DZA65_RS08735	0.69	-0.9
1,850,507	-		DZA65_RS08735	0.69	-0.7
1,850,507	-		DZA65_RS08735	0.69	-0.1
1,850,507	-		DZA65_RS08735	0.69	+0.6
1,850,507	-		DZA65_RS08735	0.69	+0.7
1,850,525	+		DZA65_RS08735	0.71	-1.7
1,850,525	+		DZA65_RS08735	0.71	-1.4
1,850,526	-		DZA65_RS08735	0.71	-0.5
1,850,530	+		DZA65_RS08735	0.72	-0.9
1,850,545	+		DZA65_RS08735	0.73	+0.8
1,850,583	-		DZA65_RS08735	0.77	+0.7
1,850,593	+		DZA65_RS08735	0.79	+1.1
1,850,594	-		DZA65_RS08735	0.79	+1.4
1,850,618	+		DZA65_RS08735	0.81	+0.3
1,850,619	-		DZA65_RS08735	0.81	+0.1
1,850,650	+		DZA65_RS08735	0.85	-0.4
1,850,650	+		DZA65_RS08735	0.85	-0.9
1,850,651	-		DZA65_RS08735	0.85	-0.3
1,850,651	-		DZA65_RS08735	0.85	-1.4
1,850,669	+				+1.1
1,850,669	+		DZA65_RS08735	0.87	+1.2
1,850,670	-		DZA65_RS08735	0.87	+0.1
1,850,670	-		DZA65_RS08735	0.87	+1.1
1,850,733	+				-1.4
1,850,733	+				+0.1
1,850,733	+				-0.5
1,850,733	+				-0.3
1,850,734	-				+0.5
1,850,737	+				-0.1
1,850,762	+				-0.3
1,850,762	+				+0.5
1,850,762	+				-2.2
1,850,762	+				+0.1
1,850,762	+				-1.9
1,850,762	+				-1.6
1,850,762	+				+1.9
1,850,762	+				+0.4
1,850,762	+				-0.2
1,850,762	+				-0.1
1,850,762	+				+1.9
1,850,762	+				+0.6
1,850,763	-				+1.0
1,850,763	-				+1.1
1,850,763	-				-1.9
1,850,763	-				-0.7
1,850,763	-				+0.6
1,850,763	-				-2.7
1,850,763	-				-0.0
1,850,763	-				-0.4
1,850,763	-				-2.9
1,850,763	-				-0.3
1,850,764	+				+2.7
1,850,831	+				-2.4
1,850,832	-				+0.9
1,850,832	-				-1.5
1,850,850	+				-0.1
1,850,850	+				-1.4
1,850,850	+				+0.4
1,850,850	+				-0.7
1,850,860	+				+1.1
1,850,947	+				+0.7
1,850,947	+				-1.2
1,850,948	-				+0.5
1,850,948	-				-0.6
1,850,948	-				+0.0
1,850,948	-				+0.9
1,850,949	+				+0.3
1,850,949	+				+1.1
1,850,950	-				-0.6
1,850,980	+				-2.4
1,850,980	+				-0.7
1,850,981	-				+0.8
1,850,981	-				-0.7
1,850,981	-				-0.2
1,850,981	-				-0.6
1,850,981	-				+1.1
1,850,981	-				+0.0
1,850,990	-				-1.9
1,850,990	-				+0.5
1,850,998	-				-1.9
1,851,053	+		DZA65_RS08740	0.13	-0.5
1,851,053	+		DZA65_RS08740	0.13	-0.3
1,851,053	+		DZA65_RS08740	0.13	-1.4
1,851,053	+		DZA65_RS08740	0.13	+0.6
1,851,054	-		DZA65_RS08740	0.13	-0.9
1,851,054	-		DZA65_RS08740	0.13	-0.7
1,851,054	-		DZA65_RS08740	0.13	+0.5
1,851,054	-		DZA65_RS08740	0.13	+0.6
1,851,054	-		DZA65_RS08740	0.13	+0.6
1,851,218	+		DZA65_RS08740	0.47	-0.2
1,851,218	+		DZA65_RS08740	0.47	+4.0
1,851,218	+		DZA65_RS08740	0.47	-0.6
1,851,218	+		DZA65_RS08740	0.47	+0.5
1,851,218	+		DZA65_RS08740	0.47	-0.9
1,851,218	+		DZA65_RS08740	0.47	-2.2
1,851,218	+		DZA65_RS08740	0.47	-0.7
1,851,219	-		DZA65_RS08740	0.47	-2.4
1,851,219	-		DZA65_RS08740	0.47	-0.0
1,851,219	-		DZA65_RS08740	0.47	-0.2
1,851,219	-		DZA65_RS08740	0.47	+0.6
1,851,219	-		DZA65_RS08740	0.47	-0.5
1,851,223	+		DZA65_RS08740	0.48	-1.6
1,851,223	+		DZA65_RS08740	0.48	-1.9
1,851,224	-		DZA65_RS08740	0.48	+0.0
1,851,224	-		DZA65_RS08740	0.48	+0.1
1,851,224	-		DZA65_RS08740	0.48	-0.7
1,851,329	+		DZA65_RS08740	0.70	-0.4
1,851,329	+		DZA65_RS08740	0.70	+0.4
1,851,329	+		DZA65_RS08740	0.70	-1.0
1,851,329	+		DZA65_RS08740	0.70	+0.7
1,851,329	+		DZA65_RS08740	0.70	+1.3
1,851,329	+		DZA65_RS08740	0.70	+0.1
1,851,329	+		DZA65_RS08740	0.70	-0.9
1,851,329	+		DZA65_RS08740	0.70	-0.1
1,851,330	-		DZA65_RS08740	0.70	-1.2
1,851,330	-				-0.3
1,851,331	+		DZA65_RS08740	0.70	-0.9
1,851,331	+		DZA65_RS08740	0.70	-1.1
1,851,331	+		DZA65_RS08740	0.70	-0.3
1,851,332	-		DZA65_RS08740	0.70	-2.1
1,851,332	-				-0.9
1,851,332	-		DZA65_RS08740	0.70	-0.2
1,851,379	-		DZA65_RS08740	0.80	+0.1
1,851,379	-		DZA65_RS08740	0.80	+0.2
1,851,439	+				+0.8
1,851,444	+				-0.6
1,851,445	-				+0.1
1,851,445	-				+0.1
1,851,448	-				-0.0
1,851,506	+				-0.3
1,851,507	-				+0.3
1,851,586	-				-0.7
1,851,590	-				+0.7
1,851,618	+				+0.9
1,851,644	+				+0.3
1,851,680	-		DZA65_RS08745	0.11	+0.1
1,851,681	+		DZA65_RS08745	0.11	+1.1
1,851,681	+		DZA65_RS08745	0.11	-1.4
1,851,682	-		DZA65_RS08745	0.11	-0.2
1,851,683	+		DZA65_RS08745	0.11	+0.1
1,851,683	+		DZA65_RS08745	0.11	-0.6
1,851,683	+		DZA65_RS08745	0.11	-0.1
1,851,683	+		DZA65_RS08745	0.11	-2.2
1,851,684	-		DZA65_RS08745	0.11	-0.6
1,851,732	-		DZA65_RS08745	0.19	+0.6
1,851,732	-		DZA65_RS08745	0.19	+0.1
1,851,761	-		DZA65_RS08745	0.24	-2.1
1,851,779	-		DZA65_RS08745	0.27	-0.2