Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08340

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,756,275	+				+0.0
1,756,285	+				+2.0
1,756,286	-				-2.1
1,756,286	-				+2.1
1,756,312	+				+0.5
1,756,352	+				-2.6
1,756,385	+				+0.1
1,756,422	-				-0.6
1,756,435	+				+0.1
1,756,482	-				-0.4
1,756,722	+		DZA65_RS08335	0.57	+1.7
1,756,723	-		DZA65_RS08335	0.57	-0.1
1,756,809	+		DZA65_RS08335	0.78	+0.0
1,756,842	-		DZA65_RS08335	0.86	-0.5
1,756,845	+		DZA65_RS08335	0.87	-0.1
1,756,845	+		DZA65_RS08335	0.87	+0.2
1,756,925	-				+0.7
1,756,925	-				-1.0
1,756,925	-				+0.2
1,756,985	+				+0.2
1,757,058	-				-1.1
1,757,058	-				-0.3
1,757,112	+				+0.2
1,757,129	+				-0.3
1,757,129	+				-0.9
1,757,129	+				-1.0
1,757,136	+				+0.8
1,757,147	-				-2.6
1,757,154	-				-2.0
1,757,154	-				+1.1
1,757,163	+				-0.2
1,757,164	-				+0.8
1,757,164	-				-2.6
1,757,170	+				+0.2
1,757,180	+				+0.5
1,757,180	+				-1.3
1,757,181	-				-0.6
1,757,181	-				-0.6
1,757,181	-				-0.8
1,757,188	-				+0.5
1,757,188	-				+0.5
1,757,197	+				-0.4
1,757,380	+				+0.4
1,757,381	-				+1.7
1,757,381	-				+0.2
1,757,381	-				+0.5
1,757,426	+				+0.7
1,757,427	-				-1.2
1,757,493	+		DZA65_RS08340	0.12	+0.2
1,757,493	+		DZA65_RS08340	0.12	-0.4
1,757,493	+		DZA65_RS08340	0.12	+0.2
1,757,493	+		DZA65_RS08340	0.12	-0.3
1,757,493	+		DZA65_RS08340	0.12	-0.6
1,757,493	+		DZA65_RS08340	0.12	-1.1
1,757,493	+		DZA65_RS08340	0.12	+0.9
1,757,493	+		DZA65_RS08340	0.12	-0.0
1,757,493	+		DZA65_RS08340	0.12	-2.1
1,757,493	+		DZA65_RS08340	0.12	+0.2
1,757,494	-		DZA65_RS08340	0.13	-1.0
1,757,494	-		DZA65_RS08340	0.13	-0.8
1,757,494	-		DZA65_RS08340	0.13	+0.6
1,757,494	-		DZA65_RS08340	0.13	-1.0
1,757,494	-		DZA65_RS08340	0.13	+0.0
1,757,494	-		DZA65_RS08340	0.13	-1.4
1,757,494	-		DZA65_RS08340	0.13	-0.3
1,757,494	-		DZA65_RS08340	0.13	+0.0
1,757,494	-		DZA65_RS08340	0.13	-0.5
1,757,494	-		DZA65_RS08340	0.13	+0.9
1,757,494	-		DZA65_RS08340	0.13	-0.4
1,757,500	+		DZA65_RS08340	0.13	+0.6
1,757,500	+		DZA65_RS08340	0.13	+1.3
1,757,501	-		DZA65_RS08340	0.13	-0.4
1,757,501	-		DZA65_RS08340	0.13	+1.1
1,757,501	-		DZA65_RS08340	0.13	-2.8
1,757,501	-		DZA65_RS08340	0.13	+0.5
1,757,501	-		DZA65_RS08340	0.13	-1.4
1,757,501	-		DZA65_RS08340	0.13	-0.2
1,757,575	+		DZA65_RS08340	0.17	-0.1
1,757,576	-		DZA65_RS08340	0.17	+1.1
1,757,675	+		DZA65_RS08340	0.23	+0.2
1,757,676	-		DZA65_RS08340	0.23	-2.7
1,757,873	+		DZA65_RS08340	0.34	+0.0
1,757,873	+		DZA65_RS08340	0.34	-0.4
1,757,873	+		DZA65_RS08340	0.34	-0.6
1,757,873	+		DZA65_RS08340	0.34	-0.6
1,757,873	+		DZA65_RS08340	0.34	-2.1
1,757,873	+		DZA65_RS08340	0.34	+0.3
1,757,873	+		DZA65_RS08340	0.34	-0.4
1,757,874	-		DZA65_RS08340	0.34	+0.8
1,757,874	-		DZA65_RS08340	0.34	-0.2
1,757,874	-		DZA65_RS08340	0.34	+2.2
1,757,874	-		DZA65_RS08340	0.34	+1.2
1,757,874	-		DZA65_RS08340	0.34	-0.6
1,757,874	-		DZA65_RS08340	0.34	+0.0
1,757,874	-		DZA65_RS08340	0.34	-1.4
1,757,874	-		DZA65_RS08340	0.34	+0.8
1,757,874	-		DZA65_RS08340	0.34	+0.5
1,757,884	+		DZA65_RS08340	0.34	-0.1
1,757,884	+		DZA65_RS08340	0.34	+0.3
1,757,884	+		DZA65_RS08340	0.34	-0.1
1,757,884	+		DZA65_RS08340	0.34	-2.6
1,757,885	-		DZA65_RS08340	0.34	-0.1
1,757,885	-		DZA65_RS08340	0.34	-0.1
1,757,885	-		DZA65_RS08340	0.34	-0.1
1,757,885	-		DZA65_RS08340	0.34	-0.2
1,757,885	-		DZA65_RS08340	0.34	+0.2
1,757,968	-		DZA65_RS08340	0.39	+1.0
1,757,978	+		DZA65_RS08340	0.40	-0.1
1,757,978	+		DZA65_RS08340	0.40	-0.7
1,757,978	+		DZA65_RS08340	0.40	-1.4
1,757,979	-		DZA65_RS08340	0.40	+0.3
1,757,987	+		DZA65_RS08340	0.40	+0.7
1,757,988	-		DZA65_RS08340	0.40	+0.3
1,758,177	+		DZA65_RS08340	0.51	-2.1
1,758,178	-		DZA65_RS08340	0.51	+0.5
1,758,178	-		DZA65_RS08340	0.51	-1.4
1,758,266	+		DZA65_RS08340	0.56	-0.0
1,758,267	-		DZA65_RS08340	0.56	-1.0
1,758,267	-		DZA65_RS08340	0.56	-0.0
1,758,348	+		DZA65_RS08340	0.60	+0.5
1,758,348	+		DZA65_RS08340	0.60	-1.0
1,758,348	+		DZA65_RS08340	0.60	-0.1
1,758,348	+		DZA65_RS08340	0.60	-0.9
1,758,348	+		DZA65_RS08340	0.60	+0.8
1,758,348	+		DZA65_RS08340	0.60	-0.6
1,758,348	+		DZA65_RS08340	0.60	-0.0
1,758,348	+		DZA65_RS08340	0.60	+0.6
1,758,349	-		DZA65_RS08340	0.60	+0.8
1,758,463	-		DZA65_RS08340	0.67	+0.5
1,758,476	+		DZA65_RS08340	0.67	-1.0
1,758,476	+		DZA65_RS08340	0.67	-0.4
1,758,476	+		DZA65_RS08340	0.67	-0.1
1,758,476	+		DZA65_RS08340	0.67	-1.6
1,758,477	-		DZA65_RS08340	0.67	-1.6
1,758,477	-		DZA65_RS08340	0.67	+0.0
1,758,573	+		DZA65_RS08340	0.73	-0.1
1,758,573	+		DZA65_RS08340	0.73	+0.2
1,758,574	-		DZA65_RS08340	0.73	-0.6
1,758,619	+		DZA65_RS08340	0.75	-0.5
1,758,619	+		DZA65_RS08340	0.75	-2.6
1,758,619	+		DZA65_RS08340	0.75	+0.2
1,758,619	+		DZA65_RS08340	0.75	-0.2
1,758,619	+		DZA65_RS08340	0.75	+0.2
1,758,620	-		DZA65_RS08340	0.75	+1.5
1,758,620	-		DZA65_RS08340	0.75	+0.2
1,758,620	-		DZA65_RS08340	0.75	-0.5
1,758,620	-		DZA65_RS08340	0.75	-0.4
1,758,645	+		DZA65_RS08340	0.77	-0.6
1,758,646	-		DZA65_RS08340	0.77	+0.2
1,758,646	-		DZA65_RS08340	0.77	+0.8
1,758,646	-		DZA65_RS08340	0.77	+0.2
1,758,683	+		DZA65_RS08340	0.79	-2.1
1,758,684	-		DZA65_RS08340	0.79	+1.1
1,758,713	+		DZA65_RS08340	0.80	-0.2
1,758,714	-		DZA65_RS08340	0.81	+0.3
1,758,841	-		DZA65_RS08340	0.88	-0.7
1,758,846	-		DZA65_RS08340	0.88	-0.0
1,758,879	+		DZA65_RS08340	0.90	+2.4
1,758,879	+		DZA65_RS08340	0.90	-0.5
1,758,879	+		DZA65_RS08340	0.90	+0.5
1,758,880	-		DZA65_RS08340	0.90	-1.2
1,758,880	-		DZA65_RS08340	0.90	+2.0
1,758,880	-		DZA65_RS08340	0.90	-1.4
1,758,880	-		DZA65_RS08340	0.90	-0.6
1,758,880	-		DZA65_RS08340	0.90	-0.4
1,758,880	-		DZA65_RS08340	0.90	-2.0
1,758,880	-		DZA65_RS08340	0.90	+0.2
1,758,880	-		DZA65_RS08340	0.90	-0.8
1,758,880	-		DZA65_RS08340	0.90	+0.4
1,758,880	-		DZA65_RS08340	0.90	-0.1
1,758,881	+		DZA65_RS08340	0.90	-0.8
1,758,881	+		DZA65_RS08340	0.90	+1.1
1,758,881	+		DZA65_RS08340	0.90	+0.8
1,758,882	-		DZA65_RS08340	0.90	-0.4
1,758,882	-		DZA65_RS08340	0.90	+0.4
1,758,882	-		DZA65_RS08340	0.90	+0.6
1,758,882	-		DZA65_RS08340	0.90	-2.1
1,758,951	+				-0.4
1,758,952	-				+0.4
1,759,022	+				+0.2
1,759,022	+				+0.1
1,759,023	-				-0.8
1,759,044	-				+1.2
1,759,067	+				-0.6
1,759,067	+				-1.2
1,759,076	+				-2.8
1,759,077	-				-1.4
1,759,077	-				-0.1
1,759,077	-				+0.2
1,759,077	-				+0.2
1,759,086	+				+0.6
1,759,087	-				+0.2
1,759,087	-				-1.8
1,759,095	+				-1.2
1,759,095	+				+0.2
1,759,095	+				+0.2
1,759,095	+				-0.2
1,759,095	+				-2.5
1,759,095	+				+0.5
1,759,095	+				+0.1
1,759,096	-				+1.2
1,759,096	-				-0.0
1,759,096	-				-1.1
1,759,096	-				+0.2
1,759,249	+		DZA65_RS08345	0.22	-1.3
1,759,250	-		DZA65_RS08345	0.22	+0.8
1,759,271	+		DZA65_RS08345	0.25	-0.1
1,759,271	+		DZA65_RS08345	0.25	+0.2
1,759,272	-		DZA65_RS08345	0.25	-0.1
1,759,779	-		DZA65_RS08345	0.87	-0.3
1,759,888	-				+0.6
1,759,888	-				+0.6
1,760,004	-				-0.5