Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07955

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,662,116	-				+0.8
1,662,203	+				-1.4
1,662,203	+				+0.7
1,662,203	+				+0.2
1,662,203	+				-1.2
1,662,204	-				-0.0
1,662,204	-				-1.2
1,662,204	-				-1.3
1,662,205	+				-0.5
1,662,205	+				-0.5
1,662,205	+				-1.8
1,662,206	-				+0.4
1,662,234	+				+0.2
1,662,235	-				+0.2
1,662,340	+				-0.8
1,662,340	+				-0.2
1,662,341	-				-1.1
1,662,341	-				+1.0
1,662,341	-				-1.1
1,662,346	-				+0.7
1,662,349	+				-2.1
1,662,349	+				-0.1
1,662,349	+				+0.5
1,662,349	+				+0.6
1,662,349	+				+0.6
1,662,350	-				-1.3
1,662,350	-				-0.7
1,662,350	-				-0.5
1,662,350	-				-0.2
1,662,350	-				-2.4
1,662,350	-				-0.4
1,662,350	-				-1.2
1,662,358	+				+0.0
1,662,358	+				-2.6
1,662,368	+				-0.6
1,662,369	-				-1.9
1,662,369	-				+1.2
1,662,414	-		DZA65_RS07950	0.11	-1.9
1,662,414	-		DZA65_RS07950	0.11	+0.9
1,662,428	+		DZA65_RS07950	0.13	-2.4
1,662,429	-		DZA65_RS07950	0.13	+1.4
1,662,566	+		DZA65_RS07950	0.32	-1.2
1,662,567	-		DZA65_RS07950	0.32	+0.0
1,662,622	+		DZA65_RS07950	0.40	-1.0
1,662,623	-		DZA65_RS07950	0.40	-0.6
1,662,773	+		DZA65_RS07950	0.61	-1.0
1,662,814	+		DZA65_RS07950	0.67	-0.5
1,662,815	-		DZA65_RS07950	0.67	+1.4
1,662,815	-		DZA65_RS07950	0.67	+0.4
1,662,852	+		DZA65_RS07950	0.72	-0.7
1,662,852	+		DZA65_RS07950	0.72	-0.9
1,662,970	+		DZA65_RS07950	0.88	-1.1
1,662,970	+		DZA65_RS07950	0.88	+0.6
1,662,970	+		DZA65_RS07950	0.88	+0.7
1,662,971	-		DZA65_RS07950	0.88	-0.2
1,662,971	-		DZA65_RS07950	0.88	-0.5
1,663,001	+				+0.2
1,663,001	+				-0.3
1,663,002	-				+0.0
1,663,247	-		DZA65_RS07955	0.43	+1.3
1,663,293	-		DZA65_RS07955	0.53	-1.4
1,663,298	+		DZA65_RS07955	0.54	+0.5
1,663,298	+		DZA65_RS07955	0.54	+0.9
1,663,298	+		DZA65_RS07955	0.54	-0.2
1,663,299	-		DZA65_RS07955	0.54	+0.9
1,663,299	-		DZA65_RS07955	0.54	-2.1
1,663,299	-		DZA65_RS07955	0.54	-0.2
1,663,299	-		DZA65_RS07955	0.54	-0.8
1,663,381	+		DZA65_RS07955	0.72	+0.2
1,663,382	-		DZA65_RS07955	0.73	-1.5
1,663,385	+		DZA65_RS07955	0.73	-0.7
1,663,385	+		DZA65_RS07955	0.73	-0.3
1,663,385	+		DZA65_RS07955	0.73	+1.2
1,663,386	-		DZA65_RS07955	0.74	+0.8
1,663,386	-		DZA65_RS07955	0.74	+0.9
1,663,386	-		DZA65_RS07955	0.74	+0.7
1,663,386	-		DZA65_RS07955	0.74	+0.9
1,663,386	-		DZA65_RS07955	0.74	-2.6
1,663,452	+		DZA65_RS07955	0.88	-0.0
1,663,478	-				+1.0
1,663,496	-				-0.7
1,663,969	+		DZA65_RS07960	0.81	-0.6
1,664,020	-				+0.1
1,664,055	+				+0.6
1,664,055	+				-0.0
1,664,056	-				+1.3
1,664,056	-				-0.8
1,664,079	+				+0.1
1,664,079	+				-0.2
1,664,079	+				-0.2
1,664,079	+				+0.0
1,664,079	+				+2.2
1,664,079	+				+1.0
1,664,079	+				+2.1
1,664,079	+				-0.1
1,664,079	+				+0.4
1,664,079	+				-1.6
1,664,079	+				+0.6
1,664,079	+				-0.5
1,664,079	+				-0.1
1,664,080	-				-0.5
1,664,080	-				+0.4
1,664,080	-				-1.6
1,664,080	-				-0.6
1,664,080	-				-0.3
1,664,080	-				-2.3
1,664,080	-				-1.4
1,664,080	-				+0.1
1,664,080	-				+0.2
1,664,080	-				-1.6
1,664,128	+				-0.8
1,664,128	+				-1.1
1,664,128	+				-0.5
1,664,128	+				-3.1
1,664,129	-				+0.4
1,664,235	-		DZA65_RS07965	0.15	-0.4
1,664,238	+		DZA65_RS07965	0.15	-0.5
1,664,239	-		DZA65_RS07965	0.15	+0.2
1,664,239	-		DZA65_RS07965	0.15	-1.1
1,664,387	+		DZA65_RS07965	0.28	-0.2
1,664,388	-		DZA65_RS07965	0.29	-2.1
1,664,400	+		DZA65_RS07965	0.30	-0.3
1,664,400	+		DZA65_RS07965	0.30	+0.6
1,664,400	+		DZA65_RS07965	0.30	-0.8
1,664,400	+		DZA65_RS07965	0.30	+0.4
1,664,401	-		DZA65_RS07965	0.30	+0.8
1,664,401	-		DZA65_RS07965	0.30	-0.6
1,664,401	-		DZA65_RS07965	0.30	-0.8
1,664,439	+		DZA65_RS07965	0.33	-0.8
1,664,439	+		DZA65_RS07965	0.33	-0.6
1,664,439	+		DZA65_RS07965	0.33	-0.3
1,664,439	+		DZA65_RS07965	0.33	-0.8
1,664,439	+		DZA65_RS07965	0.33	-2.1
1,664,439	+		DZA65_RS07965	0.33	-1.4
1,664,439	+		DZA65_RS07965	0.33	+0.2
1,664,439	+		DZA65_RS07965	0.33	-0.9
1,664,440	-		DZA65_RS07965	0.33	-0.1
1,664,440	-		DZA65_RS07965	0.33	+0.7
1,664,440	-		DZA65_RS07965	0.33	+0.4
1,664,440	-		DZA65_RS07965	0.33	-1.4
1,664,440	-		DZA65_RS07965	0.33	-0.1
1,664,440	-		DZA65_RS07965	0.33	-2.0
1,664,440	-		DZA65_RS07965	0.33	-2.9
1,664,440	-		DZA65_RS07965	0.33	-0.4
1,664,440	-		DZA65_RS07965	0.33	-0.1
1,664,440	-		DZA65_RS07965	0.33	-2.0
1,664,440	-		DZA65_RS07965	0.33	+0.9
1,664,440	-		DZA65_RS07965	0.33	-0.5
1,664,440	-		DZA65_RS07965	0.33	-1.6
1,664,440	-		DZA65_RS07965	0.33	-0.3
1,664,440	-		DZA65_RS07965	0.33	-1.0
1,664,440	-		DZA65_RS07965	0.33	-0.7
1,664,445	+		DZA65_RS07965	0.34	-0.5
1,664,445	+		DZA65_RS07965	0.34	+1.1
1,664,445	+		DZA65_RS07965	0.34	-1.8
1,664,445	+		DZA65_RS07965	0.34	-1.4
1,664,445	+		DZA65_RS07965	0.34	+1.1
1,664,445	+		DZA65_RS07965	0.34	+0.6
1,664,445	+		DZA65_RS07965	0.34	+0.6
1,664,446	-		DZA65_RS07965	0.34	-1.4
1,664,446	-		DZA65_RS07965	0.34	+2.0
1,664,446	-		DZA65_RS07965	0.34	-1.5
1,664,446	-		DZA65_RS07965	0.34	-0.1
1,664,446	-		DZA65_RS07965	0.34	-0.2
1,664,446	-		DZA65_RS07965	0.34	+0.7
1,664,446	-		DZA65_RS07965	0.34	-0.2
1,664,446	-		DZA65_RS07965	0.34	-0.2
1,664,446	-		DZA65_RS07965	0.34	+1.3
1,664,446	-		DZA65_RS07965	0.34	-0.5
1,664,446	-		DZA65_RS07965	0.34	-1.4
1,664,446	-		DZA65_RS07965	0.34	-0.3
1,664,448	-		DZA65_RS07965	0.34	+0.7