Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07900

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,647,537	-		DZA65_RS07890	0.85	-0.5
1,647,556	+		DZA65_RS07890	0.87	+0.6
1,647,557	-		DZA65_RS07890	0.88	+0.9
1,647,633	+				-0.1
1,647,634	-				-0.8
1,647,634	-				-1.6
1,647,658	+				-0.8
1,647,658	+				-0.8
1,647,658	+				-0.2
1,647,658	+				+0.9
1,647,658	+				+0.2
1,647,658	+				+2.4
1,647,658	+				+0.2
1,647,658	+				+0.1
1,647,658	+				-0.4
1,647,658	+				-0.5
1,647,658	+				-0.5
1,647,658	+				-0.0
1,647,658	+				+0.8
1,647,658	+				+1.2
1,647,658	+				+0.2
1,647,659	-				-1.0
1,647,659	-				+0.1
1,647,659	-				-2.8
1,647,659	-				+1.8
1,647,659	-				-0.5
1,647,659	-				+0.1
1,647,659	-				+0.2
1,647,659	-				-0.9
1,647,659	-				-1.2
1,647,659	-				-0.1
1,647,659	-				-1.8
1,647,659	-				+0.4
1,647,659	-				+0.7
1,647,679	-				+0.2
1,647,679	-				-1.2
1,647,718	-		DZA65_RS07895	0.11	-0.8
1,647,732	-		DZA65_RS07895	0.13	-0.7
1,647,732	-		DZA65_RS07895	0.13	-1.0
1,648,091	+		DZA65_RS07895	0.54	+0.3
1,648,223	+		DZA65_RS07895	0.70	-1.0
1,648,223	+		DZA65_RS07895	0.70	-1.4
1,648,223	+		DZA65_RS07895	0.70	+0.3
1,648,223	+		DZA65_RS07895	0.70	-0.0
1,648,224	-		DZA65_RS07895	0.70	+0.5
1,648,224	-		DZA65_RS07895	0.70	-1.1
1,648,224	-		DZA65_RS07895	0.70	+1.0
1,648,224	-		DZA65_RS07895	0.70	+0.8
1,648,224	-		DZA65_RS07895	0.70	-2.6
1,648,224	-		DZA65_RS07895	0.70	+0.2
1,648,398	+				-1.2
1,648,399	-				-0.8
1,648,499	+				-0.6
1,648,499	+				-0.9
1,648,499	+				-0.9
1,648,499	+				-1.0
1,648,499	+				-0.1
1,648,499	+				+0.0
1,648,499	+				-0.6
1,648,500	-				-1.4
1,648,500	-				-2.0
1,648,500	-				-1.5
1,648,535	+				+0.4
1,648,535	+				-0.8
1,648,535	+				+1.1
1,648,536	-				-1.4
1,648,595	+				+5.0
1,648,596	-		DZA65_RS07900	0.10	-0.6
1,648,598	-		DZA65_RS07900	0.10	-0.8
1,648,639	-		DZA65_RS07900	0.14	+0.2
1,648,697	+		DZA65_RS07900	0.20	-0.1
1,648,697	+		DZA65_RS07900	0.20	+0.2
1,648,697	+		DZA65_RS07900	0.20	+0.3
1,648,697	+		DZA65_RS07900	0.20	-0.9
1,648,697	+		DZA65_RS07900	0.20	+1.1
1,648,697	+		DZA65_RS07900	0.20	+1.8
1,648,698	-		DZA65_RS07900	0.20	-0.8
1,648,698	-		DZA65_RS07900	0.20	-0.6
1,648,698	-		DZA65_RS07900	0.20	+1.3
1,648,698	-		DZA65_RS07900	0.20	+1.7
1,648,698	-		DZA65_RS07900	0.20	-1.4
1,648,698	-		DZA65_RS07900	0.20	-1.3
1,648,698	-		DZA65_RS07900	0.20	+1.4
1,648,761	-		DZA65_RS07900	0.27	+2.5
1,648,761	-				+3.5
1,648,811	+		DZA65_RS07900	0.32	-0.7
1,648,811	+		DZA65_RS07900	0.32	+1.2
1,648,811	+		DZA65_RS07900	0.32	+0.3
1,648,812	-		DZA65_RS07900	0.32	+0.0
1,648,812	-		DZA65_RS07900	0.32	-0.2
1,648,812	-		DZA65_RS07900	0.32	-0.5
1,648,812	-		DZA65_RS07900	0.32	+1.9
1,648,812	-		DZA65_RS07900	0.32	+0.1
1,648,850	+		DZA65_RS07900	0.36	-3.0
1,648,850	+		DZA65_RS07900	0.36	+1.3
1,648,850	+		DZA65_RS07900	0.36	-2.8
1,648,850	+		DZA65_RS07900	0.36	+0.8
1,648,850	+		DZA65_RS07900	0.36	+0.5
1,648,850	+		DZA65_RS07900	0.36	+0.6
1,648,850	+		DZA65_RS07900	0.36	-1.4
1,648,850	+		DZA65_RS07900	0.36	+0.0
1,648,851	-		DZA65_RS07900	0.36	+1.2
1,648,851	-		DZA65_RS07900	0.36	+0.2
1,648,851	-		DZA65_RS07900	0.36	+1.3
1,648,866	+		DZA65_RS07900	0.38	-1.8
1,648,866	+		DZA65_RS07900	0.38	-0.9
1,648,866	+		DZA65_RS07900	0.38	-1.8
1,648,866	+		DZA65_RS07900	0.38	+0.0
1,648,866	+		DZA65_RS07900	0.38	+1.6
1,648,866	+		DZA65_RS07900	0.38	+0.9
1,648,866	+		DZA65_RS07900	0.38	+0.4
1,648,866	+		DZA65_RS07900	0.38	+0.5
1,648,866	+		DZA65_RS07900	0.38	-0.5
1,648,867	-		DZA65_RS07900	0.38	-0.2
1,648,867	-		DZA65_RS07900	0.38	+0.2
1,648,867	-		DZA65_RS07900	0.38	+0.8
1,648,867	-		DZA65_RS07900	0.38	-0.5
1,648,867	-		DZA65_RS07900	0.38	-0.1
1,648,867	-		DZA65_RS07900	0.38	+0.7
1,648,867	-		DZA65_RS07900	0.38	-0.3
1,648,867	-		DZA65_RS07900	0.38	-1.8
1,648,867	-		DZA65_RS07900	0.38	-0.0
1,648,867	-		DZA65_RS07900	0.38	-0.2
1,648,867	-		DZA65_RS07900	0.38	+0.9
1,648,867	-		DZA65_RS07900	0.38	-1.4
1,648,870	+		DZA65_RS07900	0.38	+1.2
1,648,870	+		DZA65_RS07900	0.38	+0.8
1,648,870	+		DZA65_RS07900	0.38	+0.8
1,648,870	+		DZA65_RS07900	0.38	+1.4
1,648,870	+		DZA65_RS07900	0.38	-0.6
1,648,871	-		DZA65_RS07900	0.38	-0.3
1,648,871	-		DZA65_RS07900	0.38	-0.8
1,648,871	-		DZA65_RS07900	0.38	-0.6
1,648,871	-		DZA65_RS07900	0.38	+0.2
1,648,871	-		DZA65_RS07900	0.38	+1.3
1,648,871	-		DZA65_RS07900	0.38	-0.5
1,648,986	+		DZA65_RS07900	0.50	+0.5
1,649,007	-		DZA65_RS07900	0.52	-0.9
1,649,007	-		DZA65_RS07900	0.52	+1.1
1,649,147	+		DZA65_RS07900	0.66	-0.8
1,649,147	+		DZA65_RS07900	0.66	-0.1
1,649,147	+		DZA65_RS07900	0.66	-0.6
1,649,147	+		DZA65_RS07900	0.66	-1.1
1,649,147	+		DZA65_RS07900	0.66	+0.2
1,649,148	-		DZA65_RS07900	0.66	+0.4
1,649,464	+				-1.5
1,649,464	+				+0.4
1,649,557	+				+0.5
1,649,558	-				-0.3
1,649,615	+				-1.8
1,649,657	+				-0.5
1,649,700	-				+2.4
1,649,709	+				-1.0
1,649,718	-				-0.3
1,649,718	-				-1.5
1,649,729	+				+0.0
1,649,796	+				-1.8
1,649,804	+				+0.2
1,649,805	-				+0.4
1,649,826	-				-0.6
1,649,828	-				-0.1
1,649,828	-				-0.2
1,649,830	+				-1.4
1,649,883	+				+1.9
1,649,883	+				-0.9
1,649,883	+				-0.3
1,649,887	+				-1.6
1,649,887	+				-0.7
1,649,887	+				+1.2
1,649,888	-				-0.8
1,649,896	-				-0.5
1,649,896	-				-2.4
1,649,977	+		DZA65_RS07905	0.11	+0.2
1,649,977	+		DZA65_RS07905	0.11	-1.6
1,649,978	-		DZA65_RS07905	0.11	-0.9
1,650,018	+		DZA65_RS07905	0.15	-0.4
1,650,285	+		DZA65_RS07905	0.41	-0.2
1,650,285	+		DZA65_RS07905	0.41	-1.3
1,650,285	+		DZA65_RS07905	0.41	-0.8
1,650,286	-		DZA65_RS07905	0.41	-1.5