Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07885

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,644,750	+				+0.4
1,644,750	+				+0.3
1,644,751	-				+0.8
1,644,766	+				+0.9
1,644,766	+				+0.5
1,644,767	-				-1.0
1,644,772	+				+0.6
1,644,772	+				+0.9
1,644,773	-				-0.5
1,644,773	-				+0.9
1,644,783	+				+1.0
1,644,783	+				+0.1
1,644,783	+				-0.4
1,644,783	+				-0.7
1,644,783	+				+0.8
1,644,784	-				+1.3
1,644,784	-				-0.1
1,644,784	-				-1.4
1,644,784	-				-1.8
1,644,784	-				+0.9
1,644,833	+		DZA65_RS07880	0.14	+1.2
1,644,833	+		DZA65_RS07880	0.14	+0.9
1,644,834	-		DZA65_RS07880	0.14	-0.8
1,644,838	+		DZA65_RS07880	0.14	-0.8
1,644,838	+		DZA65_RS07880	0.14	-0.6
1,644,838	+		DZA65_RS07880	0.14	+0.9
1,644,852	-		DZA65_RS07880	0.16	-0.5
1,644,852	-		DZA65_RS07880	0.16	-1.8
1,644,880	+		DZA65_RS07880	0.19	-1.4
1,644,881	-		DZA65_RS07880	0.19	+0.5
1,645,124	-		DZA65_RS07880	0.43	-2.1
1,645,131	+		DZA65_RS07880	0.44	+0.8
1,645,132	-		DZA65_RS07880	0.44	-1.1
1,645,142	+		DZA65_RS07880	0.45	+0.2
1,645,164	-		DZA65_RS07880	0.47	-1.3
1,645,164	-		DZA65_RS07880	0.47	-0.2
1,645,165	+		DZA65_RS07880	0.47	-0.2
1,645,172	+		DZA65_RS07880	0.48	-1.0
1,645,172	+		DZA65_RS07880	0.48	-0.5
1,645,173	-		DZA65_RS07880	0.48	-0.3
1,645,173	-		DZA65_RS07880	0.48	-0.0
1,645,185	+		DZA65_RS07880	0.49	-1.4
1,645,185	+		DZA65_RS07880	0.49	+0.3
1,645,229	+		DZA65_RS07880	0.54	-0.8
1,645,230	-		DZA65_RS07880	0.54	+0.5
1,645,242	+				+0.9
1,645,243	-		DZA65_RS07880	0.55	-3.5
1,645,243	-		DZA65_RS07880	0.55	-0.2
1,645,243	-		DZA65_RS07880	0.55	-0.5
1,645,245	-		DZA65_RS07880	0.56	+0.6
1,645,247	-		DZA65_RS07880	0.56	+0.0
1,645,249	+		DZA65_RS07880	0.56	-1.4
1,645,253	+		DZA65_RS07880	0.56	+0.2
1,645,253	+		DZA65_RS07880	0.56	+0.2
1,645,254	-		DZA65_RS07880	0.56	-0.1
1,645,254	-		DZA65_RS07880	0.56	+1.9
1,645,269	+		DZA65_RS07880	0.58	+0.0
1,645,295	+		DZA65_RS07880	0.61	+0.8
1,645,296	-		DZA65_RS07880	0.61	+0.2
1,645,303	+		DZA65_RS07880	0.61	+0.9
1,645,303	+		DZA65_RS07880	0.61	-0.2
1,645,304	-		DZA65_RS07880	0.62	-0.9
1,645,304	-		DZA65_RS07880	0.62	-0.8
1,645,304	-		DZA65_RS07880	0.62	-0.1
1,645,307	-		DZA65_RS07880	0.62	-0.4
1,645,307	-		DZA65_RS07880	0.62	-0.1
1,645,315	+		DZA65_RS07880	0.63	-1.8
1,645,315	+		DZA65_RS07880	0.63	-2.4
1,645,327	+		DZA65_RS07880	0.64	-0.1
1,645,327	+		DZA65_RS07880	0.64	-0.0
1,645,328	-		DZA65_RS07880	0.64	+0.8
1,645,328	-		DZA65_RS07880	0.64	-0.4
1,645,363	+		DZA65_RS07880	0.67	+0.6
1,645,411	-		DZA65_RS07880	0.72	+0.2
1,645,411	-		DZA65_RS07880	0.72	-0.2
1,645,411	-		DZA65_RS07880	0.72	-0.1
1,645,434	-		DZA65_RS07880	0.75	-1.6
1,645,444	+		DZA65_RS07880	0.76	+0.2
1,645,452	+		DZA65_RS07880	0.76	-0.8
1,645,452	+		DZA65_RS07880	0.76	-2.8
1,645,461	+		DZA65_RS07880	0.77	+0.7
1,645,461	+		DZA65_RS07880	0.77	-0.5
1,645,461	+		DZA65_RS07880	0.77	-1.8
1,645,462	-		DZA65_RS07880	0.77	-0.2
1,645,462	-		DZA65_RS07880	0.77	+0.2
1,645,462	-		DZA65_RS07880	0.77	+0.2
1,645,462	-		DZA65_RS07880	0.77	-1.0
1,645,462	-		DZA65_RS07880	0.77	-0.3
1,645,465	+		DZA65_RS07880	0.78	+1.3
1,645,465	+		DZA65_RS07880	0.78	+0.9
1,645,465	+		DZA65_RS07880	0.78	+0.2
1,645,465	+		DZA65_RS07880	0.78	+0.4
1,645,465	+		DZA65_RS07880	0.78	+0.2
1,645,465	+		DZA65_RS07880	0.78	-1.6
1,645,465	+		DZA65_RS07880	0.78	+0.4
1,645,465	+		DZA65_RS07880	0.78	-0.3
1,645,465	+		DZA65_RS07880	0.78	+0.2
1,645,465	+		DZA65_RS07880	0.78	+0.8
1,645,466	-		DZA65_RS07880	0.78	-0.7
1,645,466	-		DZA65_RS07880	0.78	+0.2
1,645,466	-		DZA65_RS07880	0.78	-0.7
1,645,466	-		DZA65_RS07880	0.78	-0.4
1,645,466	-		DZA65_RS07880	0.78	-0.4
1,645,466	-		DZA65_RS07880	0.78	+1.2
1,645,466	-		DZA65_RS07880	0.78	+0.6
1,645,466	-		DZA65_RS07880	0.78	-1.1
1,645,466	-		DZA65_RS07880	0.78	-0.1
1,645,466	-		DZA65_RS07880	0.78	-1.0
1,645,466	-		DZA65_RS07880	0.78	+0.2
1,645,466	-		DZA65_RS07880	0.78	-1.1
1,645,466	-		DZA65_RS07880	0.78	+0.7
1,645,466	-		DZA65_RS07880	0.78	+0.4
1,645,500	+		DZA65_RS07880	0.81	+0.2
1,645,522	+		DZA65_RS07880	0.84	-1.4
1,645,579	+		DZA65_RS07880	0.89	-0.5
1,645,579	+		DZA65_RS07880	0.89	-0.3
1,645,579	+		DZA65_RS07880	0.89	-0.4
1,645,579	+		DZA65_RS07880	0.89	-0.5
1,645,580	-		DZA65_RS07880	0.89	-1.1
1,645,580	-		DZA65_RS07880	0.89	-1.4
1,645,624	+				-2.4
1,645,624	+				+0.7
1,645,624	+				+1.1
1,645,624	+				-0.4
1,645,625	-				+0.2
1,645,625	-				-0.2
1,645,625	-				-0.4
1,645,673	-				-1.3
1,645,673	-				+0.2
1,645,673	-				-0.7
1,645,673	-				-0.2
1,645,673	-				-1.4
1,645,922	-		DZA65_RS07885	0.23	-1.7
1,645,922	-		DZA65_RS07885	0.23	+0.1
1,645,922	-		DZA65_RS07885	0.23	+0.4
1,645,922	-		DZA65_RS07885	0.23	-0.8
1,645,948	+		DZA65_RS07885	0.26	-0.8
1,645,949	-		DZA65_RS07885	0.26	+1.0
1,645,977	-		DZA65_RS07885	0.30	-0.8
1,645,977	-		DZA65_RS07885	0.30	+0.7
1,645,979	+		DZA65_RS07885	0.30	+3.5
1,645,979	+		DZA65_RS07885	0.30	+0.6
1,645,979	+		DZA65_RS07885	0.30	+0.2
1,645,979	+		DZA65_RS07885	0.30	-1.8
1,645,979	+		DZA65_RS07885	0.30	+0.1
1,645,979	+				-0.8
1,645,979	+		DZA65_RS07885	0.30	+2.2
1,645,979	+		DZA65_RS07885	0.30	+1.2
1,645,979	+		DZA65_RS07885	0.30	+0.2
1,645,979	+		DZA65_RS07885	0.30	+0.1
1,645,979	+		DZA65_RS07885	0.30	-0.1
1,645,979	+		DZA65_RS07885	0.30	-0.2
1,645,979	+		DZA65_RS07885	0.30	+1.3
1,645,979	+		DZA65_RS07885	0.30	+0.6
1,645,979	+		DZA65_RS07885	0.30	+1.5
1,645,980	-		DZA65_RS07885	0.30	-0.6
1,645,980	-		DZA65_RS07885	0.30	+0.2
1,645,980	-		DZA65_RS07885	0.30	+0.1
1,645,980	-		DZA65_RS07885	0.30	-2.0
1,645,980	-		DZA65_RS07885	0.30	+0.2
1,645,980	-		DZA65_RS07885	0.30	-0.8
1,645,980	-		DZA65_RS07885	0.30	-0.8
1,645,980	-		DZA65_RS07885	0.30	+0.2
1,645,980	-		DZA65_RS07885	0.30	+0.2
1,645,980	-		DZA65_RS07885	0.30	-0.6
1,645,980	-		DZA65_RS07885	0.30	-0.3
1,645,980	-		DZA65_RS07885	0.30	-1.4
1,645,980	-		DZA65_RS07885	0.30	-2.6
1,645,980	-		DZA65_RS07885	0.30	+1.3
1,645,981	+		DZA65_RS07885	0.30	-0.4
1,645,981	+		DZA65_RS07885	0.30	+0.5
1,645,981	+		DZA65_RS07885	0.30	+1.0
1,645,981	+		DZA65_RS07885	0.30	-0.2
1,645,981	+		DZA65_RS07885	0.30	+0.8
1,645,999	+		DZA65_RS07885	0.32	-0.5
1,645,999	+		DZA65_RS07885	0.32	-0.6
1,646,000	-		DZA65_RS07885	0.32	-0.3
1,646,074	+		DZA65_RS07885	0.41	-0.5
1,646,074	+		DZA65_RS07885	0.41	+0.1
1,646,101	+		DZA65_RS07885	0.44	+2.0
1,646,128	+		DZA65_RS07885	0.47	-0.3
1,646,128	+		DZA65_RS07885	0.47	-0.1
1,646,224	+		DZA65_RS07885	0.58	+0.2
1,646,225	-		DZA65_RS07885	0.58	+0.8
1,646,225	-		DZA65_RS07885	0.58	-0.4
1,646,328	-		DZA65_RS07885	0.70	-0.5
1,646,372	-		DZA65_RS07885	0.75	-1.3
1,646,384	+		DZA65_RS07885	0.77	+0.8
1,646,385	-		DZA65_RS07885	0.77	+0.5
1,646,537	+				+0.2
1,646,562	+				-0.8
1,646,563	-				-0.5
1,646,563	-				-0.0
1,646,563	-				+0.0
1,646,566	+				+0.8
1,646,567	-				+0.9
1,646,599	+				-0.4
1,646,618	+				-0.5
1,646,619	-				-1.4
1,646,619	-				-1.3
1,646,619	-				+1.5
1,646,619	-				+0.3
1,646,624	+				+0.9
1,646,624	+				+0.9
1,646,625	-				+2.4
1,646,625	-				-0.1
1,646,628	+				-0.3
1,646,628	+				-0.1
1,646,628	+				-0.8
1,646,628	+				+0.2
1,646,628	+				-2.3
1,646,628	+				-1.2
1,646,628	+				-1.4
1,646,628	+				+0.1
1,646,628	+				-1.6
1,646,628	+				-0.1
1,646,628	+				+0.5
1,646,628	+				+1.0
1,646,628	+				+0.2
1,646,629	-				-1.8
1,646,629	-				+1.2
1,646,629	-				+1.4
1,646,629	-				-0.2
1,646,629	-				+1.2
1,646,629	-				-0.1
1,646,629	-				-0.1
1,646,629	-				+1.4
1,646,633	+				+0.3
1,646,633	+				+2.2
1,646,642	+				+0.8
1,646,643	-				-0.7
1,646,650	+				-0.4
1,646,650	+				+0.1
1,646,650	+				-1.1
1,646,650	+				+1.5
1,646,650	+				-0.6
1,646,650	+				-0.1
1,646,650	+				+1.8
1,646,651	-				-0.5
1,646,651	-				-0.0
1,646,694	+				-0.4
1,646,694	+				-0.5
1,646,694	+				+0.9
1,646,695	-				+0.7
1,646,698	-				-0.1
1,646,747	-				-0.8
1,646,771	+				-1.1
1,646,771	+				+1.5
1,646,771	+				-2.7
1,646,771	+				-0.2
1,646,771	+				-0.1
1,646,771	+				-0.8
1,646,771	+				+2.5
1,646,771	+				-0.4
1,646,771	+				-2.4
1,646,771	+				+0.4
1,646,771	+				+0.2
1,646,771	+				-0.0
1,646,771	+				-2.6
1,646,771	+				+0.2
1,646,772	-				-0.0
1,646,772	-				-0.4
1,646,772	-				+0.5
1,646,772	-				-0.3
1,646,772	-				-0.6
1,646,772	-				+0.8
1,646,772	-				+0.4
1,646,772	-				+0.2
1,646,772	-				-0.2
1,646,772	-				-2.0
1,646,772	-				+1.4
1,646,810	-				-0.1
1,646,868	-				-0.8
1,646,916	+		DZA65_RS07890	0.14	+0.4
1,646,916	+		DZA65_RS07890	0.14	+0.2
1,646,916	+		DZA65_RS07890	0.14	-0.6
1,646,916	+		DZA65_RS07890	0.14	-0.8
1,646,916	+		DZA65_RS07890	0.14	-0.8
1,646,916	+		DZA65_RS07890	0.14	-0.6
1,646,917	-		DZA65_RS07890	0.14	+1.2
1,646,917	-		DZA65_RS07890	0.14	+0.6
1,646,917	-		DZA65_RS07890	0.14	-2.0
1,646,917	-		DZA65_RS07890	0.14	-0.6
1,646,917	-		DZA65_RS07890	0.14	+0.2
1,646,917	-		DZA65_RS07890	0.14	+0.3
1,646,944	-		DZA65_RS07890	0.17	-1.8
1,646,999	+		DZA65_RS07890	0.23	-0.8
1,647,000	-		DZA65_RS07890	0.23	+1.2
1,647,105	+		DZA65_RS07890	0.35	+0.3
1,647,105	+		DZA65_RS07890	0.35	+1.1
1,647,105	+		DZA65_RS07890	0.35	-3.4
1,647,106	-		DZA65_RS07890	0.36	-0.7
1,647,106	-		DZA65_RS07890	0.36	-0.9
1,647,156	+		DZA65_RS07890	0.41	-2.1
1,647,365	-		DZA65_RS07890	0.65	-0.4
1,647,365	-		DZA65_RS07890	0.65	-0.4
1,647,365	-		DZA65_RS07890	0.65	+0.9
1,647,365	-		DZA65_RS07890	0.65	-0.6
1,647,369	+		DZA65_RS07890	0.66	-0.1
1,647,537	-		DZA65_RS07890	0.85	-0.5
1,647,556	+		DZA65_RS07890	0.87	+0.6
1,647,557	-		DZA65_RS07890	0.88	+0.9