Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07620

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,586,844	+		DZA65_RS07615	0.20	-0.1
1,586,895	+		DZA65_RS07615	0.24	-0.1
1,586,895	+		DZA65_RS07615	0.24	-0.2
1,586,895	+		DZA65_RS07615	0.24	-1.4
1,586,896	-		DZA65_RS07615	0.25	-0.4
1,586,896	-		DZA65_RS07615	0.25	+0.4
1,586,928	-				-1.8
1,586,975	+		DZA65_RS07615	0.32	+0.5
1,586,976	-		DZA65_RS07615	0.32	+0.2
1,586,982	-		DZA65_RS07615	0.33	+0.5
1,587,002	+		DZA65_RS07615	0.35	-0.2
1,587,011	+		DZA65_RS07615	0.36	+0.4
1,587,020	+		DZA65_RS07615	0.37	-0.2
1,587,020	+		DZA65_RS07615	0.37	-0.9
1,587,021	-		DZA65_RS07615	0.37	-0.2
1,587,032	-		DZA65_RS07615	0.38	+1.1
1,587,032	-		DZA65_RS07615	0.38	+0.9
1,587,035	+		DZA65_RS07615	0.38	+0.0
1,587,036	-		DZA65_RS07615	0.38	-1.4
1,587,036	-		DZA65_RS07615	0.38	+1.5
1,587,036	-		DZA65_RS07615	0.38	-0.5
1,587,054	+		DZA65_RS07615	0.40	+0.3
1,587,074	+		DZA65_RS07615	0.42	-0.0
1,587,075	-		DZA65_RS07615	0.42	+2.0
1,587,133	+		DZA65_RS07615	0.48	+0.0
1,587,134	-		DZA65_RS07615	0.48	+0.4
1,587,177	+		DZA65_RS07615	0.52	+0.6
1,587,177	+		DZA65_RS07615	0.52	-0.1
1,587,177	+		DZA65_RS07615	0.52	+0.5
1,587,178	-		DZA65_RS07615	0.52	-0.2
1,587,178	-		DZA65_RS07615	0.52	-0.6
1,587,178	-		DZA65_RS07615	0.52	+1.2
1,587,233	+		DZA65_RS07615	0.57	-1.6
1,587,234	-		DZA65_RS07615	0.57	-0.6
1,587,279	+		DZA65_RS07615	0.62	+0.8
1,587,279	+		DZA65_RS07615	0.62	-0.5
1,587,279	+				+1.4
1,587,280	-		DZA65_RS07615	0.62	+1.4
1,587,280	-		DZA65_RS07615	0.62	+0.8
1,587,280	-		DZA65_RS07615	0.62	+0.4
1,587,365	+		DZA65_RS07615	0.70	-0.1
1,587,456	+		DZA65_RS07615	0.79	+0.8
1,587,459	+		DZA65_RS07615	0.79	-2.6
1,587,471	+		DZA65_RS07615	0.80	-0.2
1,587,471	+		DZA65_RS07615	0.80	-1.1
1,587,472	-		DZA65_RS07615	0.81	+0.4
1,587,472	-		DZA65_RS07615	0.81	-2.6
1,587,473	+		DZA65_RS07615	0.81	+0.1
1,587,546	+		DZA65_RS07615	0.88	+0.6
1,587,546	+		DZA65_RS07615	0.88	-1.8
1,587,546	+		DZA65_RS07615	0.88	-0.8
1,587,546	+		DZA65_RS07615	0.88	+0.3
1,587,547	-		DZA65_RS07615	0.88	-0.4
1,587,547	-		DZA65_RS07615	0.88	+0.1
1,587,572	+				-1.2
1,587,572	+				-0.3
1,587,572	+				+0.5
1,587,572	+				-0.3
1,587,572	+				+0.2
1,587,573	-				+0.0
1,587,573	-				+1.5
1,587,576	+				-2.1
1,587,576	+				-0.2
1,587,576	+				+0.6
1,587,576	+				+1.2
1,587,577	-				-1.4
1,587,577	-				+0.0
1,587,621	+				-0.6
1,587,622	-				-0.5
1,587,659	+				+1.8
1,587,659	+				+0.5
1,587,660	-				-0.8
1,587,660	-				-0.5
1,587,660	-				-0.3
1,587,671	+				+0.8
1,587,671	+				-0.2
1,587,671	+				-0.2
1,587,671	+				+0.0
1,587,684	+				+0.8
1,587,684	+				-0.1
1,587,822	+		DZA65_RS07620	0.62	+0.7
1,587,822	+		DZA65_RS07620	0.62	-0.8
1,587,822	+		DZA65_RS07620	0.62	+0.2
1,587,822	+		DZA65_RS07620	0.62	+0.7
1,587,823	-		DZA65_RS07620	0.62	+0.4
1,587,877	+		DZA65_RS07620	0.86	+1.5
1,587,877	+		DZA65_RS07620	0.86	+0.2
1,587,926	+				-1.0
1,588,149	+		DZA65_RS07625	0.32	+0.6
1,588,185	-		DZA65_RS07625	0.37	-0.6
1,588,212	+		DZA65_RS07625	0.41	-0.7
1,588,212	+		DZA65_RS07625	0.41	-0.3
1,588,212	+		DZA65_RS07625	0.41	-1.1
1,588,263	-		DZA65_RS07625	0.48	-0.6
1,588,268	+		DZA65_RS07625	0.49	-0.8
1,588,268	+		DZA65_RS07625	0.49	+0.4
1,588,269	-		DZA65_RS07625	0.49	-0.7
1,588,269	-		DZA65_RS07625	0.49	-0.2
1,588,269	-		DZA65_RS07625	0.49	-0.1
1,588,269	-		DZA65_RS07625	0.49	+0.2
1,588,269	-		DZA65_RS07625	0.49	-1.2
1,588,282	+		DZA65_RS07625	0.51	-0.6
1,588,289	+		DZA65_RS07625	0.52	-0.1
1,588,290	-		DZA65_RS07625	0.52	-2.4
1,588,291	+		DZA65_RS07625	0.52	-0.7
1,588,291	+		DZA65_RS07625	0.52	+1.1
1,588,292	-		DZA65_RS07625	0.52	-1.1
1,588,293	+		DZA65_RS07625	0.52	+0.2
1,588,293	+		DZA65_RS07625	0.52	-0.1
1,588,293	+		DZA65_RS07625	0.52	+1.2
1,588,294	-		DZA65_RS07625	0.52	-0.4
1,588,294	-		DZA65_RS07625	0.52	+0.1
1,588,316	-		DZA65_RS07625	0.56	+0.2
1,588,316	-		DZA65_RS07625	0.56	+0.5
1,588,355	+		DZA65_RS07625	0.61	+0.2
1,588,446	+		DZA65_RS07625	0.74	+0.5
1,588,446	+		DZA65_RS07625	0.74	-1.2
1,588,446	+		DZA65_RS07625	0.74	-0.3
1,588,457	+		DZA65_RS07625	0.75	+0.8
1,588,457	+		DZA65_RS07625	0.75	-0.5
1,588,458	-		DZA65_RS07625	0.75	+1.2
1,588,458	-		DZA65_RS07625	0.75	-0.6
1,588,458	-		DZA65_RS07625	0.75	-1.4
1,588,459	+		DZA65_RS07625	0.75	-0.3
1,588,460	-		DZA65_RS07625	0.76	+1.1
1,588,460	-		DZA65_RS07625	0.76	-0.3
1,588,460	-		DZA65_RS07625	0.76	+0.6
1,588,460	-		DZA65_RS07625	0.76	+0.1
1,588,460	-		DZA65_RS07625	0.76	-1.4
1,588,460	-		DZA65_RS07625	0.76	-0.1
1,588,478	+		DZA65_RS07625	0.78	+0.8
1,588,478	+		DZA65_RS07625	0.78	+1.3
1,588,478	+		DZA65_RS07625	0.78	-0.6
1,588,478	+		DZA65_RS07625	0.78	+0.2
1,588,478	+		DZA65_RS07625	0.78	-0.7
1,588,479	-		DZA65_RS07625	0.78	+0.0
1,588,479	-		DZA65_RS07625	0.78	-1.4
1,588,479	-		DZA65_RS07625	0.78	+0.4
1,588,479	-		DZA65_RS07625	0.78	-0.4
1,588,479	-		DZA65_RS07625	0.78	-0.8
1,588,479	-		DZA65_RS07625	0.78	-2.1
1,588,481	-		DZA65_RS07625	0.79	-0.4
1,588,481	-		DZA65_RS07625	0.79	+0.0
1,588,481	-		DZA65_RS07625	0.79	+0.6
1,588,578	+				+1.0
1,588,579	-				-2.8
1,588,579	-				+0.2
1,588,579	-				-2.1
1,588,599	+				-0.6
1,588,717	+				-0.5
1,588,718	-				-0.2
1,588,718	-				+2.1
1,588,718	-				-1.0
1,588,859	+		DZA65_RS07630	0.10	-0.0
1,588,859	+		DZA65_RS07630	0.10	-2.1
1,588,859	+		DZA65_RS07630	0.10	-2.2
1,588,859	+		DZA65_RS07630	0.10	+0.1
1,588,859	+		DZA65_RS07630	0.10	-0.8
1,588,859	+		DZA65_RS07630	0.10	+0.2
1,588,859	+		DZA65_RS07630	0.10	-1.1
1,588,859	+		DZA65_RS07630	0.10	-0.1
1,588,860	-		DZA65_RS07630	0.10	-0.7
1,588,860	-		DZA65_RS07630	0.10	-0.4
1,588,860	-		DZA65_RS07630	0.10	+0.4
1,588,860	-		DZA65_RS07630	0.10	+0.6
1,588,860	-		DZA65_RS07630	0.10	-0.6
1,588,860	-		DZA65_RS07630	0.10	-1.0
1,588,860	-		DZA65_RS07630	0.10	-1.5
1,588,860	-		DZA65_RS07630	0.10	+0.8
1,588,860	-		DZA65_RS07630	0.10	-0.3
1,588,860	-		DZA65_RS07630	0.10	-0.6
1,588,861	+		DZA65_RS07630	0.10	+0.0
1,588,861	+		DZA65_RS07630	0.10	-0.2
1,588,861	+		DZA65_RS07630	0.10	-0.9
1,588,861	+		DZA65_RS07630	0.10	-2.2
1,588,861	+		DZA65_RS07630	0.10	+0.5
1,588,861	+		DZA65_RS07630	0.10	-0.0
1,588,861	+		DZA65_RS07630	0.10	+0.6
1,588,861	+		DZA65_RS07630	0.10	-0.4
1,588,861	+		DZA65_RS07630	0.10	-2.8
1,588,861	+		DZA65_RS07630	0.10	-0.3
1,588,861	+		DZA65_RS07630	0.10	-1.8
1,588,861	+		DZA65_RS07630	0.10	+2.8
1,588,861	+		DZA65_RS07630	0.10	+1.4
1,588,861	+		DZA65_RS07630	0.10	+0.7
1,588,861	+		DZA65_RS07630	0.10	-0.3
1,588,861	+		DZA65_RS07630	0.10	-0.0
1,588,861	+		DZA65_RS07630	0.10	+0.9
1,588,861	+		DZA65_RS07630	0.10	+0.2
1,588,861	+		DZA65_RS07630	0.10	-1.1
1,588,861	+		DZA65_RS07630	0.10	+0.2
1,588,861	+		DZA65_RS07630	0.10	+2.1
1,588,862	-		DZA65_RS07630	0.10	-0.8
1,588,862	-		DZA65_RS07630	0.10	+0.1
1,588,862	-		DZA65_RS07630	0.10	+0.3
1,588,862	-		DZA65_RS07630	0.10	+0.4
1,588,862	-		DZA65_RS07630	0.10	-0.4
1,588,862	-		DZA65_RS07630	0.10	-0.4
1,588,862	-		DZA65_RS07630	0.10	-2.1
1,588,862	-		DZA65_RS07630	0.10	-0.5
1,588,862	-		DZA65_RS07630	0.10	-0.2
1,588,862	-		DZA65_RS07630	0.10	+1.0
1,588,862	-		DZA65_RS07630	0.10	-0.1
1,588,862	-		DZA65_RS07630	0.10	+0.4
1,588,862	-		DZA65_RS07630	0.10	-0.1
1,588,862	-		DZA65_RS07630	0.10	+0.7
1,588,862	-				-0.8
1,588,862	-		DZA65_RS07630	0.10	+0.8
1,588,862	-		DZA65_RS07630	0.10	+1.0
1,588,862	-		DZA65_RS07630	0.10	+1.5
1,588,862	-		DZA65_RS07630	0.10	-1.5
1,588,862	-		DZA65_RS07630	0.10	-0.2
1,588,897	+		DZA65_RS07630	0.12	+0.2
1,588,897	+		DZA65_RS07630	0.12	+0.2
1,588,897	+		DZA65_RS07630	0.12	+0.5
1,588,897	+				-0.4
1,588,898	-		DZA65_RS07630	0.12	-1.4
1,588,898	-		DZA65_RS07630	0.12	-0.6
1,588,898	-		DZA65_RS07630	0.12	+0.7
1,588,898	-		DZA65_RS07630	0.12	-1.6
1,588,898	-		DZA65_RS07630	0.12	+0.0