Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07295

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,516,734	+		DZA65_RS07290	0.43	-0.9
1,516,734	+		DZA65_RS07290	0.43	+0.6
1,516,735	-		DZA65_RS07290	0.43	-0.0
1,516,735	-		DZA65_RS07290	0.43	+0.1
1,516,735	-		DZA65_RS07290	0.43	-0.1
1,516,735	-		DZA65_RS07290	0.43	-2.1
1,516,798	+		DZA65_RS07290	0.48	+0.8
1,516,798	+		DZA65_RS07290	0.48	+0.1
1,516,798	+		DZA65_RS07290	0.48	+1.3
1,516,798	+		DZA65_RS07290	0.48	-1.1
1,516,798	+		DZA65_RS07290	0.48	-0.8
1,516,798	+		DZA65_RS07290	0.48	-0.2
1,516,798	+		DZA65_RS07290	0.48	-2.1
1,516,798	+		DZA65_RS07290	0.48	-1.3
1,516,799	-		DZA65_RS07290	0.48	-1.1
1,516,799	-		DZA65_RS07290	0.48	-0.0
1,516,799	-		DZA65_RS07290	0.48	-0.6
1,516,799	-		DZA65_RS07290	0.48	-0.2
1,516,799	-		DZA65_RS07290	0.48	-1.1
1,516,799	-		DZA65_RS07290	0.48	-1.7
1,516,857	+		DZA65_RS07290	0.52	-0.1
1,516,915	+		DZA65_RS07290	0.57	+0.6
1,516,915	+		DZA65_RS07290	0.57	-0.7
1,516,915	+		DZA65_RS07290	0.57	+1.0
1,516,915	+		DZA65_RS07290	0.57	+0.6
1,516,915	+		DZA65_RS07290	0.57	+0.9
1,516,915	+		DZA65_RS07290	0.57	+1.8
1,516,916	-		DZA65_RS07290	0.57	+2.2
1,516,916	-		DZA65_RS07290	0.57	-1.1
1,516,916	-		DZA65_RS07290	0.57	+1.0
1,516,916	-		DZA65_RS07290	0.57	-1.6
1,516,916	-		DZA65_RS07290	0.57	+0.5
1,516,916	-		DZA65_RS07290	0.57	-1.9
1,516,916	-		DZA65_RS07290	0.57	-0.3
1,516,916	-		DZA65_RS07290	0.57	-0.7
1,516,916	-		DZA65_RS07290	0.57	+0.3
1,516,975	+		DZA65_RS07290	0.61	+1.5
1,516,975	+		DZA65_RS07290	0.61	-0.6
1,516,976	-		DZA65_RS07290	0.61	+0.0
1,516,976	-		DZA65_RS07290	0.61	+1.3
1,516,999	-		DZA65_RS07290	0.63	+0.3
1,517,031	-		DZA65_RS07290	0.66	-0.1
1,517,031	-		DZA65_RS07290	0.66	-0.7
1,517,031	-		DZA65_RS07290	0.66	+0.9
1,517,031	-		DZA65_RS07290	0.66	+0.1
1,517,031	-		DZA65_RS07290	0.66	-0.5
1,517,133	+		DZA65_RS07290	0.74	+1.3
1,517,133	+		DZA65_RS07290	0.74	+2.1
1,517,134	-		DZA65_RS07290	0.74	-0.3
1,517,134	-		DZA65_RS07290	0.74	-0.6
1,517,176	+		DZA65_RS07290	0.77	+0.1
1,517,176	+				+0.3
1,517,176	+		DZA65_RS07290	0.77	-1.2
1,517,177	-		DZA65_RS07290	0.77	-0.8
1,517,177	-		DZA65_RS07290	0.77	-0.3
1,517,177	-		DZA65_RS07290	0.77	+0.8
1,517,177	-		DZA65_RS07290	0.77	+0.7
1,517,192	+		DZA65_RS07290	0.78	-0.7
1,517,199	+		DZA65_RS07290	0.79	-0.7
1,517,199	+		DZA65_RS07290	0.79	-2.6
1,517,200	-		DZA65_RS07290	0.79	+0.4
1,517,306	+		DZA65_RS07290	0.87	+0.4
1,517,353	-				+2.3
1,517,359	+				+0.3
1,517,360	-				-2.1
1,517,374	+				+1.8
1,517,398	+				+0.3
1,517,398	+				+0.4
1,517,398	+				+1.1
1,517,398	+				-0.6
1,517,398	+				+0.1
1,517,398	+				-1.1
1,517,398	+				-1.3
1,517,398	+				+1.8
1,517,399	-				-0.7
1,517,399	-				-1.5
1,517,399	-				-0.0
1,517,399	-				-0.1
1,517,399	-				+1.8
1,517,399	-				-0.7
1,517,399	-				-1.1
1,517,399	-				-0.9
1,517,399	-				+0.5
1,517,399	-				-0.3
1,517,399	-				-1.2
1,517,399	-				+0.8
1,517,399	-				+1.1
1,517,400	+				-0.3
1,517,400	+				+0.3
1,517,401	-				-1.0
1,517,401	-				+0.4
1,517,434	+				-0.1
1,517,434	+				-0.6
1,517,434	+				+1.3
1,517,434	+				+1.7
1,517,434	+				+0.7
1,517,435	-				+0.4
1,517,435	-				+0.4
1,517,435	-				-0.4
1,517,435	-				-2.3
1,517,435	-				+0.3
1,517,435	-				-2.1
1,517,442	-				+1.5
1,517,465	+				-0.4
1,517,553	-				+0.3
1,517,553	-				+0.0
1,517,564	+				+0.3
1,517,564	+				-1.2
1,517,564	+				-1.0
1,517,564	+				-2.1
1,517,567	+				+0.3
1,517,568	-				+1.6
1,517,568	-				+0.0
1,517,607	+				+0.0
1,517,608	-				-0.3
1,517,640	+				-2.0
1,517,641	-				+0.0
1,517,641	-				-1.7
1,517,673	-				-0.7
1,517,767	+		DZA65_RS07295	0.14	+0.0
1,517,832	-		DZA65_RS07295	0.21	+0.9
1,517,858	+		DZA65_RS07295	0.24	+0.3
1,517,859	-		DZA65_RS07295	0.24	+0.4
1,517,859	-		DZA65_RS07295	0.24	+0.1
1,517,859	-		DZA65_RS07295	0.24	-0.1
1,517,860	+		DZA65_RS07295	0.24	+0.7
1,517,861	-		DZA65_RS07295	0.24	-0.1
1,517,932	+		DZA65_RS07295	0.32	-1.5
1,517,932	+		DZA65_RS07295	0.32	-1.0
1,517,932	+		DZA65_RS07295	0.32	-1.2
1,517,932	+		DZA65_RS07295	0.32	-0.0
1,517,932	+		DZA65_RS07295	0.32	+0.3
1,517,932	+		DZA65_RS07295	0.32	-0.4
1,517,932	+		DZA65_RS07295	0.32	+1.1
1,517,932	+		DZA65_RS07295	0.32	+0.0
1,517,932	+		DZA65_RS07295	0.32	+0.3
1,517,932	+		DZA65_RS07295	0.32	-1.2
1,517,932	+		DZA65_RS07295	0.32	-0.1
1,517,933	-		DZA65_RS07295	0.32	-0.0
1,517,933	-		DZA65_RS07295	0.32	+2.8
1,517,933	-		DZA65_RS07295	0.32	-1.7
1,517,933	-		DZA65_RS07295	0.32	+0.2
1,517,933	-		DZA65_RS07295	0.32	+0.2
1,517,938	+		DZA65_RS07295	0.33	-1.7
1,517,938	+		DZA65_RS07295	0.33	-0.5
1,517,938	+		DZA65_RS07295	0.33	-0.5
1,517,938	+		DZA65_RS07295	0.33	+0.4
1,517,938	+		DZA65_RS07295	0.33	-1.1
1,517,939	-		DZA65_RS07295	0.33	+1.7
1,517,939	-		DZA65_RS07295	0.33	-1.1
1,517,939	-		DZA65_RS07295	0.33	-0.7
1,517,939	-		DZA65_RS07295	0.33	+0.2
1,518,106	+		DZA65_RS07295	0.52	-0.1
1,518,106	+		DZA65_RS07295	0.52	-0.9
1,518,120	-		DZA65_RS07295	0.53	+1.0
1,518,158	+		DZA65_RS07295	0.57	-0.1
1,518,251	+		DZA65_RS07295	0.68	+0.8
1,518,251	+		DZA65_RS07295	0.68	+0.7
1,518,251	+		DZA65_RS07295	0.68	+0.4
1,518,252	-		DZA65_RS07295	0.68	+1.8
1,518,252	-		DZA65_RS07295	0.68	+0.4
1,518,252	-		DZA65_RS07295	0.68	+0.2
1,518,253	+		DZA65_RS07295	0.68	-1.0
1,518,253	+		DZA65_RS07295	0.68	+0.7
1,518,253	+		DZA65_RS07295	0.68	+0.5
1,518,253	+		DZA65_RS07295	0.68	+0.6
1,518,253	+		DZA65_RS07295	0.68	-1.9
1,518,253	+		DZA65_RS07295	0.68	+1.3
1,518,254	-		DZA65_RS07295	0.68	+0.6
1,518,254	-		DZA65_RS07295	0.68	-0.9
1,518,254	-		DZA65_RS07295	0.68	-0.2
1,518,254	-		DZA65_RS07295	0.68	+1.1
1,518,254	-				-0.5
1,518,254	-		DZA65_RS07295	0.68	-0.1
1,518,274	-		DZA65_RS07295	0.70	+0.9
1,518,274	-		DZA65_RS07295	0.70	+0.6
1,518,376	+		DZA65_RS07295	0.82	-0.4
1,518,376	+		DZA65_RS07295	0.82	-0.6
1,518,376	+		DZA65_RS07295	0.82	+0.3
1,518,376	+		DZA65_RS07295	0.82	+0.3
1,518,377	-		DZA65_RS07295	0.82	+0.4
1,518,445	+		DZA65_RS07295	0.90	-0.3
1,518,453	+				-0.1
1,518,454	-				-0.4
1,518,470	+				-1.0
1,518,470	+				+0.8
1,518,470	+				+1.7
1,518,470	+				+0.6
1,518,476	+				+0.4
1,518,546	+				-0.7
1,518,547	-				-0.3
1,518,554	+				-0.5
1,518,554	+				+0.6
1,518,554	+				-0.5
1,518,555	-				+0.5
1,518,555	-				-0.5
1,518,555	-				+0.6
1,518,555	-				-0.3
1,518,555	-				-1.3
1,518,555	-				-0.4
1,518,555	-				-1.0
1,518,555	-				-2.6
1,518,555	-				-1.2
1,518,555	-				-0.6
1,518,555	-				-1.1
1,518,557	+				-0.7
1,518,557	+				-1.1
1,518,557	+				+0.3
1,518,582	+				+2.3
1,518,583	-				-1.4
1,518,640	+				-0.5
1,518,640	+				-0.3
1,518,641	-				-1.3
1,518,641	-				-0.2
1,518,661	+				-0.6
1,518,709	+				+0.1
1,518,709	+				-0.1
1,518,712	+				-1.7
1,518,712	+				-0.7
1,518,712	+				+0.1
1,518,712	+				+0.6
1,518,713	-				-1.7
1,518,788	+				+0.1
1,518,817	+				+0.4
1,518,817	+				+0.7
1,518,817	+				-0.0
1,518,818	-				-0.2
1,518,818	-				+0.1
1,518,893	-				-2.0
1,518,895	+				-0.7
1,518,895	+				-1.6
1,518,895	+				+0.3
1,518,895	+				+2.4
1,518,905	-				-0.2
1,518,923	+		DZA65_RS07300	0.11	-1.4
1,518,923	+		DZA65_RS07300	0.11	+0.4
1,518,923	+		DZA65_RS07300	0.11	+0.0
1,518,923	+		DZA65_RS07300	0.11	-0.4
1,518,924	-		DZA65_RS07300	0.11	-0.0
1,518,924	-		DZA65_RS07300	0.11	+0.1
1,518,924	-		DZA65_RS07300	0.11	-0.3
1,518,924	-		DZA65_RS07300	0.11	-0.9
1,518,932	+		DZA65_RS07300	0.12	-2.6
1,518,945	-		DZA65_RS07300	0.13	+0.1
1,518,962	+		DZA65_RS07300	0.15	+0.5
1,518,989	+		DZA65_RS07300	0.18	-0.6
1,518,989	+		DZA65_RS07300	0.18	-0.5
1,518,989	+		DZA65_RS07300	0.18	+0.6
1,519,015	-		DZA65_RS07300	0.21	-1.2
1,519,040	+		DZA65_RS07300	0.24	-0.5
1,519,044	+		DZA65_RS07300	0.24	-0.6
1,519,044	+		DZA65_RS07300	0.24	-0.7
1,519,045	-		DZA65_RS07300	0.25	-0.7
1,519,045	-		DZA65_RS07300	0.25	-0.1
1,519,074	+		DZA65_RS07300	0.28	-2.6
1,519,074	+		DZA65_RS07300	0.28	-0.6
1,519,074	+		DZA65_RS07300	0.28	+0.6
1,519,075	-		DZA65_RS07300	0.28	-0.7
1,519,096	-		DZA65_RS07300	0.30	-2.0
1,519,110	+		DZA65_RS07300	0.32	+0.9
1,519,149	-		DZA65_RS07300	0.36	+2.6
1,519,198	+		DZA65_RS07300	0.42	+0.6
1,519,199	-		DZA65_RS07300	0.42	+0.3
1,519,318	-		DZA65_RS07300	0.55	+0.5
1,519,346	+		DZA65_RS07300	0.58	-0.7
1,519,346	+		DZA65_RS07300	0.58	+0.7
1,519,347	-		DZA65_RS07300	0.58	-0.4
1,519,396	-		DZA65_RS07300	0.64	+0.6
1,519,396	-		DZA65_RS07300	0.64	+0.6
1,519,396	-		DZA65_RS07300	0.64	-1.1
1,519,396	-		DZA65_RS07300	0.64	-2.2
1,519,432	-		DZA65_RS07300	0.68	-2.9