Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06940

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,436,661	+		DZA65_RS06920	0.77	+1.9
1,436,662	-		DZA65_RS06920	0.77	+0.1
1,436,665	-		DZA65_RS06920	0.77	-0.5
1,436,665	-		DZA65_RS06920	0.77	-2.8
1,436,665	-		DZA65_RS06920	0.77	-1.3
1,436,778	+				-0.7
1,436,778	+				-1.3
1,436,788	+				-0.3
1,436,789	-				-2.0
1,436,791	+				-1.6
1,436,792	-				+1.2
1,436,799	+				+1.5
1,436,808	-				-0.7
1,436,839	+				-0.7
1,436,839	+				+0.8
1,436,839	+				-2.0
1,436,839	+				-0.3
1,436,840	-				-1.7
1,436,850	+				-0.3
1,436,850	+				-1.7
1,436,850	+				+0.7
1,436,850	+				+0.2
1,436,850	+				-0.2
1,436,851	-				-0.1
1,436,851	-				+0.1
1,436,860	-				-0.7
1,436,915	+				+0.6
1,436,915	+				-0.7
1,436,916	-				-0.3
1,436,916	-				-1.3
1,436,923	+				-0.5
1,436,943	+				-1.1
1,436,944	-				-0.0
1,436,944	-				+0.3
1,436,963	+				-2.1
1,436,966	+				-0.6
1,436,967	-				-0.7
1,436,967	-				-0.1
1,436,969	+				-0.2
1,436,969	+				-0.5
1,436,972	+				-0.7
1,436,972	+				+0.9
1,436,972	+				-1.9
1,436,972	+				+0.3
1,436,972	+				-0.1
1,436,973	-				-0.0
1,436,973	-				-1.9
1,436,973	-				-3.3
1,436,973	-				-0.3
1,436,973	-				+0.7
1,436,973	-				-0.3
1,436,973	-				+0.5
1,436,973	-				-0.7
1,436,974	+				-0.4
1,436,974	+				-0.1
1,437,116	+				-0.6
1,437,116	+				+1.9
1,437,116	+				-0.7
1,437,116	+				-0.2
1,437,116	+				+0.1
1,437,116	+				-0.2
1,437,116	+				-1.0
1,437,117	-				+0.1
1,437,117	-				+0.3
1,437,121	+				+0.3
1,437,121	+				-1.0
1,437,122	-				+1.4
1,437,122	-				-1.3
1,437,122	-				-0.6
1,437,122	-				+0.2
1,437,212	+				+1.5
1,437,212	+				-0.7
1,437,212	+				+0.6
1,437,213	-				-0.1
1,437,213	-				-1.7
1,437,216	+				-0.3
1,437,216	+				-0.2
1,437,217	-				+0.7
1,437,217	-				+0.5
1,437,217	-				+0.3
1,437,244	+				-0.0
1,437,244	+				-2.3
1,437,244	+				-0.6
1,437,244	+				+0.6
1,437,244	+				+0.1
1,437,244	+				-1.3
1,437,244	+				-0.0
1,437,245	-				-0.3
1,437,245	-				+0.3
1,437,245	-				+1.6
1,437,245	-				-1.3
1,437,380	+				+0.3
1,437,384	+				-0.7
1,437,384	+				-1.5
1,437,385	-				-1.7
1,437,393	+				+0.6
1,437,393	+				+2.6
1,437,394	-				-0.0
1,437,394	-				-0.7
1,437,394	-				+0.3
1,437,394	-				-0.0
1,437,394	-				+0.6
1,437,394	-				+0.6
1,437,394	-				+0.5
1,437,394	-				+0.2
1,437,412	+				-1.7
1,437,412	+				+1.0
1,437,412	+				+1.5
1,437,413	-				+2.6
1,437,421	+				-0.5
1,437,422	-				-0.7
1,437,424	+				-1.0
1,437,424	+				+1.0
1,437,425	-				+0.7
1,437,425	-				+0.7
1,437,425	-				+0.5
1,437,425	-				-0.7
1,437,425	-				+0.7
1,437,425	-				+0.7
1,437,498	-				+0.4
1,437,506	+				+2.1
1,437,507	-				+0.9
1,437,517	+				-2.0
1,437,517	+				+0.7
1,437,518	-				+0.8
1,437,518	-				-1.3
1,437,518	-				+0.9
1,437,518	-				+1.1
1,437,519	+				+1.0
1,437,519	+				-0.5
1,437,519	+				+0.8
1,437,519	+				+0.1
1,437,519	+				+1.1
1,437,520	-				+1.0
1,437,520	-				+1.3
1,437,534	+				-0.6
1,437,544	+				-0.5
1,437,567	+				+0.9
1,437,567	+				+0.3
1,437,567	+				+0.3
1,437,567	+				-0.4
1,437,568	-				+0.3
1,437,568	-				-1.0
1,437,569	+				+1.2
1,437,569	+				-0.6
1,437,569	+				-1.7
1,437,569	+				+0.1
1,437,569	+				-0.4
1,437,569	+				-1.4
1,437,570	-				-0.1
1,437,570	-				-0.9
1,437,570	-				+0.3
1,437,570	-				+1.6
1,437,570	-				-2.0
1,437,570	-				-0.3
1,437,570	-				-0.0
1,437,570	-				+0.3
1,437,570	-				-0.9
1,437,572	+				+1.5
1,437,573	-				-0.9
1,437,573	-				+0.2
1,437,600	+				-1.7
1,437,638	-				-0.3
1,437,644	+				+0.7
1,437,644	+				-0.4
1,437,644	+				-1.0
1,437,644	+				-1.3
1,437,644	+				+1.9
1,437,645	-				-2.7
1,437,645	-				-0.7
1,437,645	-				+0.2
1,437,667	-				+0.6
1,437,722	+				+0.6
1,437,723	+				-1.7
1,437,724	-		DZA65_RS06940	0.10	-0.4
1,437,724	-		DZA65_RS06940	0.10	-0.1
1,437,735	+		DZA65_RS06940	0.12	+1.9
1,437,736	-		DZA65_RS06940	0.12	+1.1
1,437,749	+		DZA65_RS06940	0.14	+1.3
1,437,749	+		DZA65_RS06940	0.14	-0.2
1,437,766	-		DZA65_RS06940	0.16	-1.0
1,437,780	+		DZA65_RS06940	0.18	-0.3
1,437,781	-		DZA65_RS06940	0.18	+0.2
1,437,801	-		DZA65_RS06940	0.21	+1.3
1,437,801	-		DZA65_RS06940	0.21	+0.3
1,437,837	+		DZA65_RS06940	0.26	+1.2
1,437,837	+		DZA65_RS06940	0.26	-0.7
1,437,964	+		DZA65_RS06940	0.44	+0.5
1,437,964	+		DZA65_RS06940	0.44	-0.0
1,437,964	+		DZA65_RS06940	0.44	-0.8
1,437,964	+		DZA65_RS06940	0.44	-0.3
1,437,965	-		DZA65_RS06940	0.44	+0.6
1,437,965	-		DZA65_RS06940	0.44	-0.3
1,437,965	-		DZA65_RS06940	0.44	+0.3
1,437,965	-		DZA65_RS06940	0.44	-0.1
1,437,965	-		DZA65_RS06940	0.44	-0.8
1,437,965	-		DZA65_RS06940	0.44	-0.4
1,438,055	-		DZA65_RS06940	0.56	-0.7
1,438,064	+		DZA65_RS06940	0.57	-0.0
1,438,071	+		DZA65_RS06940	0.58	-1.7
1,438,071	+		DZA65_RS06940	0.58	+2.1
1,438,071	+		DZA65_RS06940	0.58	+0.9
1,438,071	+		DZA65_RS06940	0.58	+0.2
1,438,071	+		DZA65_RS06940	0.58	+0.1
1,438,071	+		DZA65_RS06940	0.58	-1.7
1,438,071	+		DZA65_RS06940	0.58	-2.3
1,438,072	-		DZA65_RS06940	0.59	-1.0
1,438,072	-		DZA65_RS06940	0.59	-1.3
1,438,072	-		DZA65_RS06940	0.59	+1.5
1,438,072	-		DZA65_RS06940	0.59	-0.8
1,438,072	-		DZA65_RS06940	0.59	-0.3
1,438,072	-		DZA65_RS06940	0.59	-0.2
1,438,072	-				+0.9
1,438,161	-		DZA65_RS06940	0.71	-0.3
1,438,218	+		DZA65_RS06940	0.79	-2.0
1,438,219	-		DZA65_RS06940	0.79	-0.4
1,438,272	+		DZA65_RS06940	0.86	-0.7
1,438,272	+		DZA65_RS06940	0.86	+1.3
1,438,272	+		DZA65_RS06940	0.86	+1.5
1,438,272	+		DZA65_RS06940	0.86	+0.3
1,438,272	+		DZA65_RS06940	0.86	-0.1
1,438,273	-		DZA65_RS06940	0.87	-0.9
1,438,273	-		DZA65_RS06940	0.87	+1.5
1,438,273	-		DZA65_RS06940	0.87	+0.1
1,438,273	-		DZA65_RS06940	0.87	+0.9
1,438,273	-		DZA65_RS06940	0.87	+0.3
1,438,273	-		DZA65_RS06940	0.87	+0.2
1,438,273	-		DZA65_RS06940	0.87	-0.9
1,438,273	-		DZA65_RS06940	0.87	+0.8
1,438,273	-		DZA65_RS06940	0.87	-0.3
1,438,273	-		DZA65_RS06940	0.87	+0.8
1,438,273	-		DZA65_RS06940	0.87	+0.3
1,438,284	+		DZA65_RS06940	0.88	+0.9
1,438,284	+		DZA65_RS06940	0.88	+0.5
1,438,285	-		DZA65_RS06940	0.88	-0.4
1,438,302	+				-0.4
1,438,329	+				+0.1
1,438,330	-				-1.3
1,438,346	-				+0.7
1,438,403	-				-0.1
1,438,438	-				-0.6
1,438,441	+				+2.4
1,438,441	+				+2.6
1,438,442	-				-0.9
1,438,459	+				+0.1
1,438,460	-				+0.1
1,438,460	-				-0.6
1,438,460	-				+0.6
1,438,460	-				+0.3
1,438,511	+				-0.7
1,438,512	-				-0.3
1,438,513	+				+0.3
1,438,514	-				-0.4
1,438,537	-				+1.3
1,438,537	-				-0.3
1,438,599	-				+0.6
1,438,605	+				+2.1
1,438,605	+				+0.4
1,438,667	+				-0.7
1,438,667	+				-0.9
1,438,667	+				-0.4
1,438,668	-				+0.6
1,438,670	+				+2.1
1,438,713	+		DZA65_RS06945	0.13	-1.1
1,438,713	+		DZA65_RS06945	0.13	+0.5
1,438,713	+		DZA65_RS06945	0.13	-0.0
1,438,713	+		DZA65_RS06945	0.13	-0.3
1,438,713	+		DZA65_RS06945	0.13	+1.0
1,438,713	+		DZA65_RS06945	0.13	+0.9
1,438,714	-		DZA65_RS06945	0.14	-0.5
1,438,714	-		DZA65_RS06945	0.14	-0.4
1,438,714	-		DZA65_RS06945	0.14	+0.3
1,438,714	-		DZA65_RS06945	0.14	-0.3
1,438,714	-		DZA65_RS06945	0.14	-0.1
1,438,714	-		DZA65_RS06945	0.14	-0.3
1,438,714	-		DZA65_RS06945	0.14	+0.3
1,438,714	-		DZA65_RS06945	0.14	-2.6
1,438,716	+		DZA65_RS06945	0.14	+0.0
1,438,716	+		DZA65_RS06945	0.14	+0.4
1,438,716	+		DZA65_RS06945	0.14	+0.8
1,438,717	-		DZA65_RS06945	0.14	-0.6
1,438,717	-		DZA65_RS06945	0.14	+0.5
1,438,717	-		DZA65_RS06945	0.14	-1.3
1,438,814	+		DZA65_RS06945	0.23	+0.3
1,438,815	-		DZA65_RS06945	0.23	+0.9
1,438,861	+		DZA65_RS06945	0.28	-0.1
1,438,861	+		DZA65_RS06945	0.28	-0.1
1,438,861	+		DZA65_RS06945	0.28	+1.4
1,438,862	-		DZA65_RS06945	0.28	-0.1
1,438,862	-		DZA65_RS06945	0.28	-0.5
1,438,862	-		DZA65_RS06945	0.28	-0.2
1,438,862	-		DZA65_RS06945	0.28	+0.3
1,438,862	-		DZA65_RS06945	0.28	-0.5
1,438,986	+		DZA65_RS06945	0.40	+0.2
1,438,986	+		DZA65_RS06945	0.40	+0.3
1,438,986	+		DZA65_RS06945	0.40	-0.5
1,438,986	+		DZA65_RS06945	0.40	-0.2
1,438,986	+		DZA65_RS06945	0.40	-0.4
1,438,986	+		DZA65_RS06945	0.40	+0.1
1,438,987	-		DZA65_RS06945	0.40	+1.9
1,438,987	-		DZA65_RS06945	0.40	+1.3
1,439,045	-		DZA65_RS06945	0.45	+0.6
1,439,045	-				-1.7
1,439,072	+		DZA65_RS06945	0.48	-0.6
1,439,072	+		DZA65_RS06945	0.48	+0.6
1,439,073	-		DZA65_RS06945	0.48	-0.4
1,439,090	+		DZA65_RS06945	0.49	+0.7
1,439,091	-		DZA65_RS06945	0.50	+0.7
1,439,121	+		DZA65_RS06945	0.52	+0.1
1,439,121	+		DZA65_RS06945	0.52	-0.9
1,439,121	+		DZA65_RS06945	0.52	-0.7
1,439,121	+		DZA65_RS06945	0.52	-0.1
1,439,121	+		DZA65_RS06945	0.52	-1.8
1,439,122	-		DZA65_RS06945	0.53	-2.0
1,439,122	-		DZA65_RS06945	0.53	-0.1
1,439,149	+		DZA65_RS06945	0.55	+0.5
1,439,149	+		DZA65_RS06945	0.55	+0.4
1,439,149	+		DZA65_RS06945	0.55	+0.7
1,439,149	+		DZA65_RS06945	0.55	-0.2
1,439,149	+		DZA65_RS06945	0.55	+3.3
1,439,149	+		DZA65_RS06945	0.55	-0.1
1,439,149	+		DZA65_RS06945	0.55	+0.0
1,439,149	+				-0.7
1,439,149	+		DZA65_RS06945	0.55	-1.3
1,439,149	+		DZA65_RS06945	0.55	-1.1
1,439,150	-		DZA65_RS06945	0.55	-1.3
1,439,150	-		DZA65_RS06945	0.55	-1.3
1,439,150	-		DZA65_RS06945	0.55	+1.9
1,439,367	-		DZA65_RS06945	0.76	+1.6