Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06170

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,273,734	-		DZA65_RS06160	0.42	-0.3
1,274,238	-		DZA65_RS06165	0.52	+1.6
1,274,238	-		DZA65_RS06165	0.52	+0.9
1,274,290	+		DZA65_RS06165	0.60	-1.2
1,274,390	+		DZA65_RS06165	0.77	-2.8
1,274,390	+		DZA65_RS06165	0.77	-0.3
1,274,390	+		DZA65_RS06165	0.77	-1.6
1,274,390	+		DZA65_RS06165	0.77	-0.2
1,274,390	+		DZA65_RS06165	0.77	+1.4
1,274,390	+		DZA65_RS06165	0.77	-0.8
1,274,390	+				-1.9
1,274,391	-		DZA65_RS06165	0.77	+1.0
1,274,569	+				+0.1
1,274,569	+				-1.8
1,274,569	+				-1.6
1,274,569	+				+0.5
1,274,569	+				-0.4
1,274,569	+				+1.0
1,274,569	+				+0.5
1,274,569	+				+0.0
1,274,570	-				+0.1
1,274,570	-				+0.8
1,274,570	-				-0.5
1,274,570	-				-0.2
1,274,570	-				+0.1
1,274,570	-				+0.7
1,274,570	-				-0.1
1,274,615	+				-0.4
1,274,615	+				-0.5
1,274,616	-				+0.5
1,274,616	-				-0.8
1,274,616	-				+0.4
1,274,616	-				-0.5
1,274,616	-				+0.4
1,274,632	+				+1.8
1,274,632	+				+0.5
1,274,632	+				-0.8
1,274,632	+				-1.8
1,274,632	+				-1.5
1,274,633	-				+0.7
1,274,633	-				-0.5
1,274,633	-				+0.4
1,274,704	-				+0.6
1,274,707	+				-0.5
1,274,707	+				+1.4
1,274,708	-				+1.0
1,274,708	-				-0.2
1,274,711	+				+0.2
1,274,712	-				-1.9
1,274,723	+				-1.4
1,274,723	+				-0.9
1,274,723	+				-0.9
1,274,723	+				+1.1
1,274,723	+				+0.4
1,274,723	+				+0.4
1,274,723	+				-0.9
1,274,724	-				-0.6
1,274,724	-				+1.5
1,274,724	-				+0.4
1,274,724	-				-0.3
1,274,724	-				+0.7
1,274,724	-				-0.0
1,274,724	-				-0.5
1,274,727	-				+1.3
1,274,727	-				+0.4
1,274,727	-				-0.3
1,274,727	-				-0.2
1,274,733	+				+0.9
1,274,733	+				+0.9
1,274,733	+				-0.4
1,274,734	-				-0.6
1,274,734	-				+0.0
1,274,734	-				+0.4
1,274,815	-				-0.9
1,274,822	+				+0.7
1,274,822	+				+0.1
1,274,822	+				+0.2
1,274,822	+				+0.2
1,274,823	-				-1.1
1,274,823	-				-0.0
1,274,823	-				-0.9
1,274,823	-				-1.2
1,274,823	-				+0.1
1,274,823	-				-2.0
1,274,865	+				+0.2
1,274,902	+				-0.6
1,275,009	+		DZA65_RS06170	0.15	+1.4
1,275,009	+		DZA65_RS06170	0.15	+1.8
1,275,009	+		DZA65_RS06170	0.15	+2.0
1,275,010	-		DZA65_RS06170	0.15	-0.6
1,275,115	+		DZA65_RS06170	0.20	+1.0
1,275,126	+		DZA65_RS06170	0.21	-0.0
1,275,127	-		DZA65_RS06170	0.21	+0.8
1,275,139	-		DZA65_RS06170	0.21	-1.6
1,275,188	+		DZA65_RS06170	0.24	-1.3
1,275,188	+		DZA65_RS06170	0.24	-2.2
1,275,189	-		DZA65_RS06170	0.24	-0.4
1,275,189	-		DZA65_RS06170	0.24	-0.3
1,275,189	-		DZA65_RS06170	0.24	+0.6
1,275,217	+		DZA65_RS06170	0.26	-0.8
1,275,217	+		DZA65_RS06170	0.26	-0.3
1,275,217	+		DZA65_RS06170	0.26	-2.3
1,275,217	+		DZA65_RS06170	0.26	-0.8
1,275,218	-		DZA65_RS06170	0.26	-0.9
1,275,218	-		DZA65_RS06170	0.26	+0.8
1,275,218	-		DZA65_RS06170	0.26	-0.0
1,275,331	+		DZA65_RS06170	0.32	-0.1
1,275,331	+		DZA65_RS06170	0.32	-0.8
1,275,331	+		DZA65_RS06170	0.32	+1.1
1,275,479	-		DZA65_RS06170	0.40	+0.5
1,275,490	+		DZA65_RS06170	0.40	-0.5
1,275,490	+		DZA65_RS06170	0.40	+0.6
1,275,490	+		DZA65_RS06170	0.40	+0.4
1,275,491	-		DZA65_RS06170	0.40	-1.8
1,275,491	-		DZA65_RS06170	0.40	+0.3
1,275,491	-		DZA65_RS06170	0.40	-1.6
1,275,491	-		DZA65_RS06170	0.40	-1.4
1,275,491	-		DZA65_RS06170	0.40	+0.4
1,275,491	-		DZA65_RS06170	0.40	+0.5
1,275,491	-		DZA65_RS06170	0.40	+0.1
1,275,491	-		DZA65_RS06170	0.40	-0.0
1,275,562	+		DZA65_RS06170	0.44	-0.2
1,275,562	+		DZA65_RS06170	0.44	+0.1
1,275,577	+		DZA65_RS06170	0.45	+1.2
1,275,577	+		DZA65_RS06170	0.45	-1.1
1,275,577	+		DZA65_RS06170	0.45	-0.0
1,275,577	+		DZA65_RS06170	0.45	-1.2
1,275,578	-		DZA65_RS06170	0.45	+0.3
1,275,578	-		DZA65_RS06170	0.45	-0.2
1,275,578	-		DZA65_RS06170	0.45	-0.3
1,275,578	-		DZA65_RS06170	0.45	-0.6
1,275,578	-		DZA65_RS06170	0.45	+1.4
1,275,578	-		DZA65_RS06170	0.45	+0.9
1,275,641	-		DZA65_RS06170	0.48	-1.2
1,275,641	-		DZA65_RS06170	0.48	-0.3
1,275,641	-		DZA65_RS06170	0.48	+1.2
1,275,641	-		DZA65_RS06170	0.48	-0.1
1,275,692	-		DZA65_RS06170	0.51	-1.0
1,275,692	-		DZA65_RS06170	0.51	-0.6
1,275,723	+		DZA65_RS06170	0.52	+0.4
1,275,723	+		DZA65_RS06170	0.52	-0.6
1,275,724	-		DZA65_RS06170	0.53	-1.9
1,275,998	-		DZA65_RS06170	0.67	+0.5
1,276,033	+		DZA65_RS06170	0.69	-0.3
1,276,034	-		DZA65_RS06170	0.69	-2.2
1,276,036	+		DZA65_RS06170	0.69	-1.6
1,276,036	+		DZA65_RS06170	0.69	-0.3
1,276,036	+		DZA65_RS06170	0.69	-0.3
1,276,036	+		DZA65_RS06170	0.69	+0.7
1,276,037	-		DZA65_RS06170	0.69	-1.9
1,276,037	-		DZA65_RS06170	0.69	+1.4
1,276,037	-		DZA65_RS06170	0.69	-0.3
1,276,037	-		DZA65_RS06170	0.69	-0.1
1,276,037	-		DZA65_RS06170	0.69	-0.6
1,276,037	-		DZA65_RS06170	0.69	+0.3
1,276,037	-		DZA65_RS06170	0.69	-1.8
1,276,054	+		DZA65_RS06170	0.70	-0.1
1,276,054	+		DZA65_RS06170	0.70	+1.4
1,276,055	-		DZA65_RS06170	0.70	-0.6
1,276,153	+		DZA65_RS06170	0.75	+1.7
1,276,153	+		DZA65_RS06170	0.75	+0.9
1,276,154	-		DZA65_RS06170	0.75	+2.0
1,276,174	-		DZA65_RS06170	0.76	+0.2
1,276,174	-		DZA65_RS06170	0.76	+0.1
1,276,439	-				+0.5
1,276,439	-				+1.9
1,276,560	+				+0.2
1,276,604	+				-0.2
1,276,605	-				+0.8
1,276,622	+				+0.7
1,276,622	+				+0.4
1,276,622	+				+1.5
1,276,622	+				+0.2
1,276,710	+				+1.4
1,276,710	+				-2.2
1,276,710	+				-0.5
1,276,711	-				-0.5
1,276,711	-				+0.5
1,276,711	-				+0.4
1,276,711	-				+1.0
1,276,711	-				-1.2
1,276,758	+				+0.5
1,276,761	+				-0.5
1,276,761	+				+0.2
1,276,761	+				-0.1
1,276,762	-				+0.3
1,276,762	-				-0.5
1,276,762	-				+0.8
1,276,762	-				-1.0
1,277,593	+				-0.5
1,277,594	-				+1.0
1,277,594	-				-0.5
1,277,594	-				+0.1
1,277,594	-				-0.6