Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06075

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,255,233	+		DZA65_RS06070	0.34	+0.6
1,255,233	+		DZA65_RS06070	0.34	-1.2
1,255,285	+		DZA65_RS06070	0.38	-1.2
1,255,285	+		DZA65_RS06070	0.38	+0.7
1,255,285	+		DZA65_RS06070	0.38	+2.0
1,255,285	+		DZA65_RS06070	0.38	+1.2
1,255,285	+		DZA65_RS06070	0.38	-0.2
1,255,286	-		DZA65_RS06070	0.38	-0.3
1,255,286	-		DZA65_RS06070	0.38	-0.7
1,255,286	-		DZA65_RS06070	0.38	+0.7
1,255,322	-		DZA65_RS06070	0.41	-0.2
1,255,364	+		DZA65_RS06070	0.44	-0.6
1,255,364	+		DZA65_RS06070	0.44	+1.9
1,255,364	+		DZA65_RS06070	0.44	-0.2
1,255,364	+		DZA65_RS06070	0.44	-0.9
1,255,364	+		DZA65_RS06070	0.44	-0.3
1,255,371	+		DZA65_RS06070	0.44	+0.9
1,255,371	+		DZA65_RS06070	0.44	+0.4
1,255,470	-		DZA65_RS06070	0.52	+0.2
1,255,492	+		DZA65_RS06070	0.54	+1.2
1,255,492	+		DZA65_RS06070	0.54	+1.1
1,255,493	-		DZA65_RS06070	0.54	+1.0
1,255,493	-		DZA65_RS06070	0.54	+0.4
1,255,493	-		DZA65_RS06070	0.54	+0.2
1,255,493	-		DZA65_RS06070	0.54	-0.6
1,255,493	-		DZA65_RS06070	0.54	+1.0
1,255,662	+		DZA65_RS06070	0.67	+0.5
1,255,662	+		DZA65_RS06070	0.67	+0.1
1,255,663	-		DZA65_RS06070	0.67	+1.1
1,255,663	-		DZA65_RS06070	0.67	-0.5
1,255,769	+		DZA65_RS06070	0.75	+0.5
1,255,834	-		DZA65_RS06070	0.80	-1.9
1,255,838	+		DZA65_RS06070	0.81	-2.1
1,255,838	+		DZA65_RS06070	0.81	-0.9
1,255,838	+		DZA65_RS06070	0.81	-0.2
1,255,838	+		DZA65_RS06070	0.81	+0.6
1,255,838	+		DZA65_RS06070	0.81	-1.6
1,255,838	+		DZA65_RS06070	0.81	+0.7
1,255,838	+		DZA65_RS06070	0.81	-1.2
1,255,838	+		DZA65_RS06070	0.81	-0.2
1,255,838	+		DZA65_RS06070	0.81	-1.4
1,255,839	-		DZA65_RS06070	0.81	+0.3
1,255,839	-		DZA65_RS06070	0.81	+0.7
1,255,839	-		DZA65_RS06070	0.81	+0.1
1,255,839	-		DZA65_RS06070	0.81	+0.0
1,255,839	-		DZA65_RS06070	0.81	+0.6
1,255,839	-		DZA65_RS06070	0.81	+1.4
1,255,839	-		DZA65_RS06070	0.81	-0.3
1,255,839	-		DZA65_RS06070	0.81	+2.0
1,255,908	+		DZA65_RS06070	0.86	+0.8
1,255,909	-		DZA65_RS06070	0.86	+0.1
1,255,928	+		DZA65_RS06070	0.88	+0.1
1,255,929	-		DZA65_RS06070	0.88	-0.1
1,255,958	+		DZA65_RS06070	0.90	+0.7
1,255,958	+		DZA65_RS06070	0.90	-0.3
1,255,958	+		DZA65_RS06070	0.90	-0.6
1,255,958	+		DZA65_RS06070	0.90	-1.7
1,255,958	+		DZA65_RS06070	0.90	-0.3
1,255,958	+		DZA65_RS06070	0.90	-1.6
1,255,959	-				-0.9
1,255,959	-				+0.9
1,255,959	-				+1.0
1,255,959	-				-0.8
1,255,959	-				+0.1
1,255,959	-				-0.8
1,256,001	+				+1.0
1,256,001	+				-1.6
1,256,001	+				+1.6
1,256,001	+				+0.2
1,256,001	+				+0.3
1,256,002	-				-1.4
1,256,002	-				+1.2
1,256,002	-				-0.1
1,256,002	-				+1.4
1,256,077	+				+0.4
1,256,087	-				-0.1
1,256,094	+				+1.0
1,256,102	+				+2.4
1,256,102	+				-0.9
1,256,103	-				+0.7
1,256,123	+				-0.1
1,256,181	+				-0.6
1,256,199	+				+0.0
1,256,265	+				-0.9
1,256,265	+				+0.5
1,256,265	+				-0.4
1,256,265	+				+0.0
1,256,265	+				-0.6
1,256,265	+				-0.5
1,256,265	+				+1.3
1,256,265	+				-1.8
1,256,265	+				+0.6
1,256,265	+				+0.2
1,256,265	+				-0.2
1,256,266	-				-1.2
1,256,266	-				-0.4
1,256,266	-				-0.1
1,256,266	-				+0.6
1,256,266	-				-2.4
1,256,266	-				+0.4
1,256,322	+		DZA65_RS06075	0.14	+0.2
1,256,323	-		DZA65_RS06075	0.14	+0.4
1,256,323	-		DZA65_RS06075	0.14	+0.4
1,256,458	+		DZA65_RS06075	0.30	-0.2
1,256,458	+		DZA65_RS06075	0.30	-0.1
1,256,458	+		DZA65_RS06075	0.30	-0.3
1,256,458	+		DZA65_RS06075	0.30	-0.6
1,256,459	-		DZA65_RS06075	0.30	+0.6
1,256,459	-		DZA65_RS06075	0.30	+0.4
1,256,459	-		DZA65_RS06075	0.30	+0.7
1,256,459	-		DZA65_RS06075	0.30	+0.0
1,256,459	-		DZA65_RS06075	0.30	-1.4
1,256,459	-		DZA65_RS06075	0.30	+0.4
1,256,459	-		DZA65_RS06075	0.30	+0.8
1,256,459	-		DZA65_RS06075	0.30	+0.6
1,256,460	+		DZA65_RS06075	0.30	+1.7
1,256,472	+		DZA65_RS06075	0.32	+1.0
1,256,472	+		DZA65_RS06075	0.32	+3.0
1,256,473	-		DZA65_RS06075	0.32	+0.8
1,256,500	+		DZA65_RS06075	0.35	+1.1
1,256,501	-		DZA65_RS06075	0.35	+1.7
1,256,522	+		DZA65_RS06075	0.38	-0.8
1,256,522	+		DZA65_RS06075	0.38	-0.2
1,256,522	+		DZA65_RS06075	0.38	+0.1
1,256,522	+		DZA65_RS06075	0.38	+0.1
1,256,522	+		DZA65_RS06075	0.38	+0.9
1,256,522	+		DZA65_RS06075	0.38	-0.9
1,256,522	+		DZA65_RS06075	0.38	+2.2
1,256,522	+		DZA65_RS06075	0.38	+1.0
1,256,523	-		DZA65_RS06075	0.38	-0.3
1,256,523	-		DZA65_RS06075	0.38	-0.6
1,256,523	-		DZA65_RS06075	0.38	+0.5
1,256,523	-		DZA65_RS06075	0.38	+0.5
1,256,523	-		DZA65_RS06075	0.38	-0.7
1,256,523	-		DZA65_RS06075	0.38	+0.7
1,256,523	-		DZA65_RS06075	0.38	+0.8
1,256,523	-		DZA65_RS06075	0.38	-1.9
1,256,583	-		DZA65_RS06075	0.45	+1.0
1,256,606	-		DZA65_RS06075	0.47	-0.5
1,256,606	-		DZA65_RS06075	0.47	-0.6
1,256,752	+		DZA65_RS06075	0.64	+0.1
1,256,752	+		DZA65_RS06075	0.64	+0.5
1,256,752	+		DZA65_RS06075	0.64	-0.3
1,256,752	+		DZA65_RS06075	0.64	+0.4
1,256,753	-		DZA65_RS06075	0.64	-0.3
1,256,755	-		DZA65_RS06075	0.64	-0.1
1,256,835	+		DZA65_RS06075	0.74	+1.0
1,256,835	+		DZA65_RS06075	0.74	+0.8
1,256,836	-		DZA65_RS06075	0.74	+1.2
1,256,836	-		DZA65_RS06075	0.74	-0.0
1,256,836	-		DZA65_RS06075	0.74	+0.5
1,256,839	+		DZA65_RS06075	0.74	-0.7
1,256,839	+		DZA65_RS06075	0.74	-0.8
1,256,840	-		DZA65_RS06075	0.74	+0.6
1,256,840	-		DZA65_RS06075	0.74	+0.4
1,256,840	-		DZA65_RS06075	0.74	-0.3
1,256,874	+		DZA65_RS06075	0.78	+1.2
1,256,874	+		DZA65_RS06075	0.78	+0.7
1,256,874	+		DZA65_RS06075	0.78	+0.7
1,256,874	+		DZA65_RS06075	0.78	-0.6
1,256,875	-		DZA65_RS06075	0.78	-1.5
1,256,875	-		DZA65_RS06075	0.78	+0.1
1,256,960	+		DZA65_RS06075	0.88	+0.2
1,256,960	+		DZA65_RS06075	0.88	-1.1
1,256,960	+		DZA65_RS06075	0.88	+0.0
1,256,961	-		DZA65_RS06075	0.88	-1.4
1,256,961	-		DZA65_RS06075	0.88	-1.6
1,257,026	+				-0.5
1,257,061	+				-0.8
1,257,061	+				+0.8
1,257,061	+				+1.1
1,257,061	+				+0.7
1,257,061	+				+0.1
1,257,062	-				-1.9
1,257,062	-				+1.0
1,257,062	-				+0.9
1,257,062	-				+1.4
1,257,062	-				+0.1
1,257,065	+				-0.2
1,257,065	+				+0.4
1,257,065	+				-1.6
1,257,065	+				+1.2
1,257,066	-				-0.0
1,257,066	-				+0.1
1,257,066	-				+1.6
1,257,066	-				-0.4
1,257,066	-				-0.6
1,257,078	+				+1.0
1,257,079	-				+0.4
1,257,087	+				-0.3
1,257,088	-				-0.8
1,257,101	+				+1.2
1,257,101	+				-1.6
1,257,101	+				-0.1
1,257,101	+				-1.4
1,257,102	-				-0.6
1,257,102	-				-0.1
1,257,102	-				-0.1
1,257,128	+				-0.3
1,257,151	+				+0.1
1,257,173	+				+1.0
1,257,186	+				-0.0
1,257,207	+				+0.9
1,257,216	+				+0.2
1,257,216	+				-0.7
1,257,217	-				+1.6
1,257,228	-				-1.9
1,257,245	+				-2.2
1,257,245	+				+0.4
1,257,245	+				+1.6
1,257,245	+				+0.2
1,257,246	-				-0.4
1,257,246	-				+0.3
1,257,246	-				+0.5
1,257,253	-				+0.4
1,257,268	+				-0.6
1,257,268	+				-0.0
1,257,269	-				+0.8
1,257,314	+				-2.7
1,257,315	-				+0.1
1,257,315	-				+0.7
1,257,318	+				-0.4
1,257,319	-				+0.8
1,257,329	-				-0.1
1,257,329	-				-0.9
1,257,329	-				-1.6
1,257,332	+				+2.4
1,257,333	-				-0.6
1,257,340	+				+1.0
1,257,340	+				+0.7
1,257,340	+				-0.6
1,257,347	+				-0.3
1,257,347	+				+1.3
1,257,348	-				-0.1
1,257,348	-				-0.5
1,257,348	-				-0.7
1,257,348	-				+0.2
1,257,348	-				+0.6
1,257,359	+				-0.4
1,257,363	-				-1.8
1,257,363	-				+1.4
1,257,395	+		DZA65_RS06080	0.11	+0.6
1,257,497	+		DZA65_RS06080	0.29	+0.7
1,257,497	+		DZA65_RS06080	0.29	-0.0
1,257,498	-		DZA65_RS06080	0.30	-0.4
1,257,498	-		DZA65_RS06080	0.30	-1.1
1,257,645	+		DZA65_RS06080	0.56	+0.4
1,257,646	-		DZA65_RS06080	0.56	-1.2
1,257,646	-		DZA65_RS06080	0.56	+1.1
1,257,646	-		DZA65_RS06080	0.56	+3.1
1,257,646	-		DZA65_RS06080	0.56	-0.3
1,257,647	+		DZA65_RS06080	0.56	+0.4
1,257,647	+		DZA65_RS06080	0.56	+0.4
1,257,677	+		DZA65_RS06080	0.62	-0.4
1,257,677	+		DZA65_RS06080	0.62	-1.3
1,257,678	-		DZA65_RS06080	0.62	-1.2
1,257,678	-		DZA65_RS06080	0.62	-0.6
1,257,752	+		DZA65_RS06080	0.75	+1.1
1,257,885	+				+2.0
1,257,885	+				-0.4
1,257,886	-				-0.3
1,257,886	-				-0.6
1,257,886	-				-0.3
1,257,886	-				+0.1
1,257,888	+				-0.1
1,257,888	+				-1.2
1,257,888	+				+1.1
1,257,888	+				+0.6
1,257,888	+				+0.8
1,257,888	+				+0.8
1,257,889	-				-0.5
1,257,889	-				+1.4
1,257,889	-				+0.4
1,257,920	+				-1.5
1,257,920	+				+1.7
1,257,920	+				+0.4
1,257,920	+				-1.1
1,257,920	+				+0.0
1,257,920	+				+1.1
1,257,920	+				+0.2
1,257,920	+				-0.3
1,257,921	-				+0.4
1,257,921	-				-1.3
1,257,921	-				-2.2
1,257,921	-				-0.2
1,257,921	-				+0.9
1,257,921	-				-0.2
1,257,921	-				-1.2
1,257,921	-				-1.6
1,257,921	-				-2.0
1,257,925	+				+1.4
1,257,925	+				+0.4
1,257,925	+				+2.1
1,257,925	+				+0.5
1,257,926	-				-0.3
1,257,926	-				+0.6
1,257,977	-		DZA65_RS06085	0.18	+0.3