Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05800

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,189,830	-				+0.7
1,189,830	-				-1.6
1,189,864	+				-0.5
1,189,886	+				+0.4
1,189,886	+				-0.6
1,189,887	-				-0.4
1,189,887	-				-0.6
1,189,887	-				-0.3
1,189,887	-				+0.9
1,189,887	-				+1.5
1,189,887	-				+0.1
1,189,887	-				-1.2
1,189,887	-				-0.9
1,189,890	+				+0.8
1,189,890	+				-1.6
1,189,890	+				+0.2
1,189,890	+				+1.0
1,189,891	-				-0.6
1,189,891	-				-0.0
1,189,891	-				-1.2
1,189,891	-				-0.1
1,189,891	-				+0.1
1,189,984	+		DZA65_RS05795	0.12	-0.1
1,190,019	-		DZA65_RS05795	0.15	+0.0
1,190,408	-		DZA65_RS05795	0.58	-0.6
1,190,408	-		DZA65_RS05795	0.58	+1.0
1,190,439	+		DZA65_RS05795	0.61	-1.6
1,190,439	+		DZA65_RS05795	0.61	-0.1
1,190,440	-		DZA65_RS05795	0.62	-0.9
1,190,440	-		DZA65_RS05795	0.62	+1.1
1,190,508	+				+1.4
1,190,508	+		DZA65_RS05795	0.69	+3.7
1,190,560	+		DZA65_RS05795	0.75	-0.5
1,190,561	-		DZA65_RS05795	0.75	+1.2
1,190,659	+		DZA65_RS05795	0.86	-0.4
1,190,659	+		DZA65_RS05795	0.86	-0.7
1,190,659	+		DZA65_RS05795	0.86	-2.5
1,190,660	-		DZA65_RS05795	0.86	+2.4
1,190,660	-		DZA65_RS05795	0.86	-2.8
1,190,694	-		DZA65_RS05795	0.89	+1.3
1,190,694	-		DZA65_RS05795	0.89	-0.1
1,190,829	-				-2.1
1,190,829	-				-0.2
1,190,904	+				+0.4
1,190,905	-				+1.1
1,191,127	-				-0.6
1,191,210	-		DZA65_RS05800	0.10	-1.9
1,191,457	+		DZA65_RS05800	0.17	+0.4
1,191,457	+		DZA65_RS05800	0.17	+0.4
1,191,457	+		DZA65_RS05800	0.17	-1.9
1,191,457	+		DZA65_RS05800	0.17	+1.2
1,191,457	+		DZA65_RS05800	0.17	-0.3
1,191,457	+		DZA65_RS05800	0.17	+0.2
1,191,458	-		DZA65_RS05800	0.17	+0.1
1,191,458	-		DZA65_RS05800	0.17	-0.5
1,191,458	-		DZA65_RS05800	0.17	+0.4
1,191,458	-		DZA65_RS05800	0.17	+0.7
1,191,458	-		DZA65_RS05800	0.17	-1.2
1,191,617	-		DZA65_RS05800	0.21	+0.5
1,191,880	+		DZA65_RS05800	0.29	+0.9
1,191,881	-		DZA65_RS05800	0.29	+1.1
1,191,942	+		DZA65_RS05800	0.30	-0.9
1,191,943	-		DZA65_RS05800	0.30	-0.3
1,191,972	-		DZA65_RS05800	0.31	-0.2
1,192,327	+		DZA65_RS05800	0.41	+0.3
1,192,328	-		DZA65_RS05800	0.41	-0.8
1,192,328	-		DZA65_RS05800	0.41	-0.8
1,192,335	+		DZA65_RS05800	0.41	-0.3
1,192,359	+				+1.0
1,192,359	+		DZA65_RS05800	0.42	-0.2
1,192,360	-		DZA65_RS05800	0.42	-0.8
1,192,360	-		DZA65_RS05800	0.42	+1.4
1,192,465	+		DZA65_RS05800	0.44	+0.2
1,192,465	+		DZA65_RS05800	0.44	-0.3
1,192,466	-		DZA65_RS05800	0.44	-1.6
1,192,466	-		DZA65_RS05800	0.44	-0.2
1,192,821	-		DZA65_RS05800	0.54	-0.9
1,192,912	+		DZA65_RS05800	0.57	-1.9
1,192,913	-		DZA65_RS05800	0.57	+0.1
1,192,913	-		DZA65_RS05800	0.57	-0.6
1,192,974	+		DZA65_RS05800	0.58	-0.2
1,192,975	-		DZA65_RS05800	0.58	-1.6
1,192,975	-		DZA65_RS05800	0.58	-0.3
1,193,132	+		DZA65_RS05800	0.63	-0.4
1,193,132	+		DZA65_RS05800	0.63	+0.6
1,193,133	-		DZA65_RS05800	0.63	-3.3
1,193,232	+		DZA65_RS05800	0.65	-2.4
1,193,232	+		DZA65_RS05800	0.65	-2.2
1,193,233	-		DZA65_RS05800	0.65	-0.3
1,193,233	-		DZA65_RS05800	0.65	+0.4
1,193,233	-		DZA65_RS05800	0.65	-0.3
1,193,273	+		DZA65_RS05800	0.66	+0.7
1,193,282	-		DZA65_RS05800	0.67	-2.4
1,193,282	-		DZA65_RS05800	0.67	-0.5
1,193,282	-		DZA65_RS05800	0.67	+0.4
1,193,439	+		DZA65_RS05800	0.71	-2.9
1,193,440	-		DZA65_RS05800	0.71	-0.6
1,193,440	-		DZA65_RS05800	0.71	-0.6
1,193,440	-		DZA65_RS05800	0.71	+1.7
1,193,440	-		DZA65_RS05800	0.71	-1.0
1,193,665	+		DZA65_RS05800	0.77	+0.4
1,193,666	-		DZA65_RS05800	0.77	+0.8
1,193,666	-		DZA65_RS05800	0.77	-0.6
1,193,666	-		DZA65_RS05800	0.77	+0.2
1,193,670	+		DZA65_RS05800	0.77	-0.5
1,193,670	+				-0.6
1,193,698	+		DZA65_RS05800	0.78	-0.1
1,193,698	+		DZA65_RS05800	0.78	-1.9
1,193,698	+		DZA65_RS05800	0.78	-0.6
1,193,698	+		DZA65_RS05800	0.78	+0.6
1,193,699	-		DZA65_RS05800	0.78	+0.4
1,193,699	-		DZA65_RS05800	0.78	-0.0
1,193,699	-		DZA65_RS05800	0.78	+0.1
1,193,699	-		DZA65_RS05800	0.78	-1.2
1,193,699	-		DZA65_RS05800	0.78	-0.9
1,193,699	-		DZA65_RS05800	0.78	-0.9
1,193,699	-		DZA65_RS05800	0.78	-2.3
1,193,699	-		DZA65_RS05800	0.78	+0.4
1,193,768	+		DZA65_RS05800	0.80	-1.2
1,193,769	-		DZA65_RS05800	0.80	+0.8
1,193,769	-		DZA65_RS05800	0.80	-0.8
1,193,769	-		DZA65_RS05800	0.80	-0.5
1,193,969	+		DZA65_RS05800	0.85	-0.9
1,193,969	+		DZA65_RS05800	0.85	-0.4
1,193,969	+		DZA65_RS05800	0.85	-2.3
1,193,969	+				+3.4
1,193,970	-		DZA65_RS05800	0.85	-0.9
1,194,348	-				+1.0
1,194,348	-				+0.4
1,194,826	+		DZA65_RS05805	0.26	-1.9
1,194,826	+		DZA65_RS05805	0.26	-1.2
1,194,827	-		DZA65_RS05805	0.26	-0.6
1,194,876	+		DZA65_RS05805	0.30	-0.4
1,194,876	+		DZA65_RS05805	0.30	+0.4
1,194,876	+		DZA65_RS05805	0.30	+0.6
1,194,877	-		DZA65_RS05805	0.30	+0.5
1,194,955	+		DZA65_RS05805	0.36	-0.4
1,194,955	+		DZA65_RS05805	0.36	-1.6
1,194,955	+		DZA65_RS05805	0.36	+0.1
1,194,955	+		DZA65_RS05805	0.36	+0.4
1,194,955	+		DZA65_RS05805	0.36	+2.2
1,194,956	-		DZA65_RS05805	0.36	-0.6
1,194,956	-		DZA65_RS05805	0.36	-1.2
1,194,956	-		DZA65_RS05805	0.36	-0.9
1,194,956	-		DZA65_RS05805	0.36	+0.7
1,194,956	-		DZA65_RS05805	0.36	-2.1
1,194,956	-		DZA65_RS05805	0.36	+1.2
1,195,013	-		DZA65_RS05805	0.41	-1.8
1,195,055	+		DZA65_RS05805	0.44	+0.6
1,195,056	-		DZA65_RS05805	0.45	+2.0
1,195,073	-		DZA65_RS05805	0.46	+0.4
1,195,073	-		DZA65_RS05805	0.46	+0.7
1,195,073	-		DZA65_RS05805	0.46	-1.9
1,195,123	+		DZA65_RS05805	0.50	-1.1
1,195,123	+		DZA65_RS05805	0.50	-0.4
1,195,123	+		DZA65_RS05805	0.50	-1.9
1,195,123	+		DZA65_RS05805	0.50	+1.0
1,195,123	+		DZA65_RS05805	0.50	+0.7
1,195,124	-		DZA65_RS05805	0.50	-1.2
1,195,124	-		DZA65_RS05805	0.50	-0.1
1,195,127	+		DZA65_RS05805	0.50	+0.5
1,195,333	-		DZA65_RS05805	0.67	-0.7
1,195,333	-		DZA65_RS05805	0.67	-2.4
1,195,392	+		DZA65_RS05805	0.72	+0.9
1,195,393	-		DZA65_RS05805	0.72	+1.0