Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS05700

Experiment: Upstate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Upstate
1,172,741	+				+0.6
1,172,741	+				+0.4
1,172,741	+				-1.4
1,172,742	-				-0.6
1,172,742	-				-0.4
1,172,744	+				-0.2
1,172,744	+				+0.4
1,172,744	+				+0.3
1,172,744	+				-1.5
1,172,744	+				-1.8
1,172,744	+				-0.5
1,172,745	-				+0.8
1,172,745	-				+0.3
1,172,745	-				-0.0
1,172,856	+				+1.0
1,172,856	+				-0.2
1,172,856	+				+0.4
1,172,856	+				+0.9
1,172,856	+				-1.8
1,172,857	-				+0.4
1,172,857	-				-0.2
1,172,857	-				+0.7
1,172,857	-				-0.3
1,172,858	+				-1.0
1,172,858	+				+0.1
1,172,858	+				+0.4
1,172,858	+				+0.9
1,172,858	+				-0.3
1,172,858	+				+1.1
1,172,858	+				-0.6
1,172,858	+				+0.1
1,172,858	+				-0.2
1,172,858	+				-0.3
1,172,858	+				-0.3
1,172,858	+				-1.6
1,172,858	+				-0.1
1,172,858	+				-0.2
1,172,858	+				+2.0
1,172,859	-				+0.6
1,172,859	-				+0.5
1,172,859	-				-1.4
1,172,859	-				+1.0
1,172,859	-				-0.7
1,172,859	-				-2.9
1,172,859	-				+0.4
1,172,859	-				+1.0
1,172,894	+				-0.3
1,172,894	+				+0.9
1,172,894	+				+0.6
1,172,894	+				+1.7
1,172,895	-				-0.9
1,172,895	-				+2.0
1,172,913	+		DZA65_RS05695	0.11	+0.0
1,172,918	+		DZA65_RS05695	0.12	-0.0
1,172,918	+		DZA65_RS05695	0.12	+1.6
1,172,918	+		DZA65_RS05695	0.12	-0.9
1,172,919	-		DZA65_RS05695	0.12	+1.4
1,172,919	-		DZA65_RS05695	0.12	+0.7
1,172,919	-		DZA65_RS05695	0.12	+0.1
1,173,008	+		DZA65_RS05695	0.24	-1.9
1,173,008	+		DZA65_RS05695	0.24	-0.9
1,173,008	+		DZA65_RS05695	0.24	-2.2
1,173,008	+		DZA65_RS05695	0.24	+1.0
1,173,124	+		DZA65_RS05695	0.40	+1.4
1,173,124	+		DZA65_RS05695	0.40	-0.2
1,173,124	+		DZA65_RS05695	0.40	+1.6
1,173,125	-		DZA65_RS05695	0.40	+0.8
1,173,127	+		DZA65_RS05695	0.40	-0.3
1,173,127	+		DZA65_RS05695	0.40	+1.2
1,173,127	+		DZA65_RS05695	0.40	-1.4
1,173,127	+		DZA65_RS05695	0.40	+0.2
1,173,127	+		DZA65_RS05695	0.40	-0.3
1,173,127	+				+1.0
1,173,127	+		DZA65_RS05695	0.40	-1.2
1,173,127	+		DZA65_RS05695	0.40	-0.4
1,173,128	-		DZA65_RS05695	0.41	+0.4
1,173,128	-		DZA65_RS05695	0.41	-1.4
1,173,128	-		DZA65_RS05695	0.41	-0.1
1,173,128	-		DZA65_RS05695	0.41	+1.0
1,173,128	-		DZA65_RS05695	0.41	-0.6
1,173,128	-		DZA65_RS05695	0.41	-2.4
1,173,128	-		DZA65_RS05695	0.41	-0.4
1,173,128	-		DZA65_RS05695	0.41	-0.9
1,173,128	-		DZA65_RS05695	0.41	-1.3
1,173,186	-		DZA65_RS05695	0.49	-0.5
1,173,292	+		DZA65_RS05695	0.63	-1.6
1,173,292	+		DZA65_RS05695	0.63	-0.9
1,173,292	+		DZA65_RS05695	0.63	+0.0
1,173,292	+		DZA65_RS05695	0.63	-1.2
1,173,293	-				+2.0
1,173,293	-		DZA65_RS05695	0.63	-1.0
1,173,293	-		DZA65_RS05695	0.63	+0.8
1,173,293	-		DZA65_RS05695	0.63	+0.7
1,173,293	-		DZA65_RS05695	0.63	+0.7
1,173,293	-		DZA65_RS05695	0.63	-0.8
1,173,293	-		DZA65_RS05695	0.63	+1.4
1,173,293	-		DZA65_RS05695	0.63	+1.2
1,173,293	-		DZA65_RS05695	0.63	+1.0
1,173,293	-		DZA65_RS05695	0.63	+0.4
1,173,323	+		DZA65_RS05695	0.67	+0.4
1,173,324	-		DZA65_RS05695	0.68	+0.4
1,173,349	+		DZA65_RS05695	0.71	-0.5
1,173,349	+		DZA65_RS05695	0.71	+0.4
1,173,349	+		DZA65_RS05695	0.71	-1.0
1,173,349	+		DZA65_RS05695	0.71	+2.6
1,173,349	+		DZA65_RS05695	0.71	+0.1
1,173,349	+		DZA65_RS05695	0.71	+0.5
1,173,349	+		DZA65_RS05695	0.71	+0.4
1,173,349	+		DZA65_RS05695	0.71	-0.5
1,173,349	+		DZA65_RS05695	0.71	-0.9
1,173,349	+		DZA65_RS05695	0.71	-0.4
1,173,350	-		DZA65_RS05695	0.71	+0.4
1,173,350	-		DZA65_RS05695	0.71	+1.3
1,173,350	-		DZA65_RS05695	0.71	-0.6
1,173,350	-		DZA65_RS05695	0.71	-0.6
1,173,350	-		DZA65_RS05695	0.71	+3.8
1,173,350	-		DZA65_RS05695	0.71	+0.2
1,173,350	-		DZA65_RS05695	0.71	-0.6
1,173,350	-		DZA65_RS05695	0.71	-0.6
1,173,350	-		DZA65_RS05695	0.71	+0.8
1,173,435	-		DZA65_RS05695	0.83	-0.2
1,173,435	-		DZA65_RS05695	0.83	+0.1
1,173,435	-		DZA65_RS05695	0.83	+0.6
1,173,435	-		DZA65_RS05695	0.83	-2.4
1,173,435	-		DZA65_RS05695	0.83	+1.4
1,173,450	+		DZA65_RS05695	0.85	-0.1
1,173,450	+		DZA65_RS05695	0.85	-0.1
1,173,451	-		DZA65_RS05695	0.85	+0.1
1,173,528	-				-1.1
1,173,528	-				-1.1
1,173,548	+				+0.0
1,173,548	+				-0.3
1,173,548	+				-0.2
1,173,548	+				+0.9
1,173,548	+				-1.3
1,173,548	+				-0.7
1,173,548	+				+0.3
1,173,549	-				+0.4
1,173,549	-				-0.5
1,173,549	-				+0.4
1,173,549	-				-0.7
1,173,549	-				-0.2
1,173,549	-				-2.5
1,173,549	-				+1.4
1,173,549	-				+0.2
1,173,549	-				-0.6
1,173,552	+				-2.2
1,173,552	+				-1.4
1,173,552	+				-0.5
1,173,552	+				-0.8
1,173,552	+				-0.3
1,173,552	+				+0.7
1,173,552	+				+0.1
1,173,552	+				-0.0
1,173,552	+				-0.4
1,173,552	+				+0.4
1,173,552	+				-1.0
1,173,553	-				-0.4
1,173,553	-				-0.3
1,173,553	-				+0.4
1,173,553	-				-0.4
1,173,553	-				+0.4
1,173,553	-				-1.9
1,173,553	-				-0.9
1,173,564	+				+0.5
1,173,654	+		DZA65_RS05700	0.22	+1.0
1,173,657	+		DZA65_RS05700	0.22	+0.4
1,173,658	-		DZA65_RS05700	0.23	-0.5
1,173,658	-		DZA65_RS05700	0.23	+1.0
1,173,750	+		DZA65_RS05700	0.45	-0.5
1,173,750	+		DZA65_RS05700	0.45	+0.5
1,173,750	+		DZA65_RS05700	0.45	+0.0
1,173,751	-		DZA65_RS05700	0.45	+0.1
1,173,767	+		DZA65_RS05700	0.49	-1.9
1,173,767	+		DZA65_RS05700	0.49	+1.7
1,173,767	+		DZA65_RS05700	0.49	-2.3
1,173,767	+		DZA65_RS05700	0.49	-2.2
1,173,767	+		DZA65_RS05700	0.49	+1.6
1,173,767	+		DZA65_RS05700	0.49	-1.0
1,173,767	+		DZA65_RS05700	0.49	-0.6
1,173,767	+		DZA65_RS05700	0.49	-0.1
1,173,767	+		DZA65_RS05700	0.49	-1.2
1,173,767	+		DZA65_RS05700	0.49	-0.2
1,173,767	+		DZA65_RS05700	0.49	+0.6
1,173,767	+		DZA65_RS05700	0.49	-1.0
1,173,767	+		DZA65_RS05700	0.49	-0.9
1,173,767	+		DZA65_RS05700	0.49	+1.0
1,173,767	+		DZA65_RS05700	0.49	-2.4
1,173,767	+		DZA65_RS05700	0.49	+0.4
1,173,768	-		DZA65_RS05700	0.49	+0.6
1,173,768	-		DZA65_RS05700	0.49	+0.4
1,173,768	-		DZA65_RS05700	0.49	+0.1
1,173,768	-		DZA65_RS05700	0.49	+1.4
1,173,768	-		DZA65_RS05700	0.49	-0.2
1,173,768	-		DZA65_RS05700	0.49	-0.2
1,173,768	-		DZA65_RS05700	0.49	-0.3
1,173,768	-		DZA65_RS05700	0.49	-2.2
1,173,768	-		DZA65_RS05700	0.49	-1.2
1,173,768	-				-0.6
1,173,819	+		DZA65_RS05700	0.61	+1.2
1,173,819	+		DZA65_RS05700	0.61	+0.1
1,173,820	-		DZA65_RS05700	0.61	+1.8
1,173,849	+		DZA65_RS05700	0.68	+0.7
1,173,850	-		DZA65_RS05700	0.68	+1.1
1,173,850	-		DZA65_RS05700	0.68	-2.6
1,173,850	-		DZA65_RS05700	0.68	+0.4
1,173,902	+		DZA65_RS05700	0.81	-0.3
1,173,902	+		DZA65_RS05700	0.81	-1.9
1,173,902	+		DZA65_RS05700	0.81	-0.1
1,173,902	+		DZA65_RS05700	0.81	-1.2
1,173,902	+		DZA65_RS05700	0.81	-0.3
1,173,902	+		DZA65_RS05700	0.81	-0.5
1,173,902	+		DZA65_RS05700	0.81	+2.0
1,173,902	+		DZA65_RS05700	0.81	+0.4
1,173,903	-		DZA65_RS05700	0.81	+1.0
1,173,903	-		DZA65_RS05700	0.81	+0.3
1,173,903	-		DZA65_RS05700	0.81	+0.4
1,173,903	-		DZA65_RS05700	0.81	+0.1
1,173,903	-		DZA65_RS05700	0.81	-2.4
1,173,949	+				+0.4
1,173,949	+				-3.1
1,173,968	+				-1.2
1,173,968	+				-0.9
1,173,968	+				-0.4
1,173,969	-				+0.6
1,173,969	-				-0.3
1,173,969	-				-0.1
1,173,969	-				+0.4
1,173,969	-				-0.3
1,173,971	+				-0.6
1,173,971	+				+1.7
1,173,971	+				+0.6
1,173,971	+				-1.6
1,173,971	+				+0.5
1,173,971	+				-2.6
1,173,971	+				+0.1
1,173,972	-				-0.9
1,173,972	-				-0.0
1,173,972	-				+0.2
1,173,972	-				-0.8
1,173,986	+				+0.0
1,173,986	+				+0.7
1,173,987	-				+0.6
1,174,004	+				-0.8
1,174,005	-				+0.5
1,174,005	-				+1.1
1,174,035	+				-0.3
1,174,142	+		DZA65_RS05705	0.28	+0.9
1,174,142	+		DZA65_RS05705	0.28	+0.4
1,174,143	-		DZA65_RS05705	0.29	-0.3
1,174,143	-		DZA65_RS05705	0.29	+0.1
1,174,143	-		DZA65_RS05705	0.29	+0.9
1,174,143	-		DZA65_RS05705	0.29	+0.4
1,174,143	-		DZA65_RS05705	0.29	+0.6
1,174,143	-		DZA65_RS05705	0.29	+0.4
1,174,221	-		DZA65_RS05705	0.43	+0.1
1,174,248	-		DZA65_RS05705	0.48	+1.4
1,174,248	-		DZA65_RS05705	0.48	+1.7
1,174,331	+		DZA65_RS05705	0.63	-0.7
1,174,331	+		DZA65_RS05705	0.63	-0.4
1,174,331	+		DZA65_RS05705	0.63	+0.1
1,174,331	+		DZA65_RS05705	0.63	+0.0
1,174,332	-		DZA65_RS05705	0.63	+0.6
1,174,472	+		DZA65_RS05705	0.88	-1.2
1,174,472	+		DZA65_RS05705	0.88	+2.0
1,174,472	+		DZA65_RS05705	0.88	+0.4
1,174,472	+		DZA65_RS05705	0.88	-0.4
1,174,473	-		DZA65_RS05705	0.88	-0.3
1,174,473	-		DZA65_RS05705	0.88	-2.2
1,174,473	-		DZA65_RS05705	0.88	+2.4
1,174,473	-		DZA65_RS05705	0.88	+1.3
1,174,509	+				-1.0
1,174,509	+				-0.0
1,174,510	-				+0.2
1,174,510	-				-0.1
1,174,520	+				+0.4
1,174,520	+				-0.3
1,174,520	+				+1.2
1,174,520	+				-0.5
1,174,520	+				-0.0
1,174,521	-				+0.5
1,174,521	-				-0.1
1,174,521	-				+1.6
1,174,558	+				+0.9
1,174,639	+				+1.2
1,174,639	+				+0.8
1,174,639	+				+0.4
1,174,639	+				+1.4
1,174,639	+				-0.8
1,174,639	+				-0.8
1,174,639	+				-1.4
1,174,640	-				+0.3
1,174,640	-				-0.3
1,174,640	-				-0.1
1,174,640	-				+0.6
1,174,640	-				+1.8
1,174,640	-				-0.6
1,174,640	-				+0.2
1,174,640	-				-0.4
1,174,642	+				-2.4
1,174,642	+				-0.4
1,174,642	+				+0.2
1,174,642	+				-1.2
1,174,643	-				-1.5
1,174,643	-				+1.1
1,174,643	-				+0.4
1,174,643	-				+0.8
1,174,643	-				-0.9
1,174,643	-				-1.2
1,174,643	-				+0.8
1,174,643	-				-0.9
1,174,670	-				-0.3
1,174,720	+		DZA65_RS05710	0.13	-0.0
1,174,817	+		DZA65_RS05710	0.20	-0.9
1,174,818	-		DZA65_RS05710	0.21	+0.4
1,174,831	-		DZA65_RS05710	0.22	-1.2
1,174,831	-		DZA65_RS05710	0.22	+0.4
1,174,836	+		DZA65_RS05710	0.22	-0.7
1,174,836	+		DZA65_RS05710	0.22	-0.2
1,174,836	+		DZA65_RS05710	0.22	-0.2
1,174,837	-		DZA65_RS05710	0.22	-0.6
1,174,837	-		DZA65_RS05710	0.22	-0.0
1,174,837	-		DZA65_RS05710	0.22	-1.2
1,174,839	-				-0.2
1,174,839	-		DZA65_RS05710	0.22	+0.4
1,174,839	-		DZA65_RS05710	0.22	-1.4
1,174,912	-		DZA65_RS05710	0.28	-0.9
1,174,948	-		DZA65_RS05710	0.31	+0.1
1,174,955	+		DZA65_RS05710	0.32	+1.1
1,174,955	+		DZA65_RS05710	0.32	-0.8
1,174,955	+		DZA65_RS05710	0.32	-0.2