Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04615 and DZA65_RS04625 are separated by 475 nucleotides DZA65_RS04625 and DZA65_RS04630 are separated by 70 nucleotides DZA65_RS04630 and DZA65_RS04640 are separated by 763 nucleotides
DZA65_RS04615: DZA65_RS04615 - alpha/beta hydrolase, at 965,915 to 966,655
_RS04615
DZA65_RS04625: DZA65_RS04625 - IS4 family transposase, at 967,131 to 967,287
_RS04625
DZA65_RS04630: DZA65_RS04630 - ATP-binding protein, at 967,358 to 967,639
_RS04630
DZA65_RS04640: DZA65_RS04640 - Expansin-yoaJ, at 968,403 to 969,128
_RS04640
Position (kb) 967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 966.358 kb on + strand, within DZA65_RS04615 at 966.358 kb on + strand, within DZA65_RS04615 at 966.359 kb on - strand, within DZA65_RS04615 at 966.361 kb on + strand, within DZA65_RS04615 at 966.371 kb on + strand, within DZA65_RS04615 at 966.411 kb on - strand, within DZA65_RS04615 at 966.434 kb on + strand, within DZA65_RS04615 at 966.469 kb on + strand, within DZA65_RS04615 at 966.562 kb on + strand, within DZA65_RS04615 at 966.650 kb on + strand at 966.911 kb on + strand at 966.936 kb on + strand at 966.936 kb on + strand at 966.941 kb on - strand at 966.968 kb on - strand at 966.968 kb on - strand at 966.989 kb on + strand at 966.991 kb on + strand at 967.130 kb on + strand at 967.130 kb on + strand at 967.130 kb on + strand at 967.130 kb on + strand at 967.131 kb on - strand at 967.131 kb on - strand at 967.131 kb on - strand at 967.140 kb on + strand at 967.205 kb on + strand, within DZA65_RS04625 at 967.206 kb on - strand, within DZA65_RS04625 at 967.265 kb on + strand, within DZA65_RS04625 at 967.266 kb on - strand, within DZA65_RS04625 at 967.266 kb on - strand, within DZA65_RS04625 at 967.266 kb on - strand, within DZA65_RS04625 at 967.266 kb on - strand, within DZA65_RS04625 at 967.400 kb on + strand, within DZA65_RS04630 at 967.400 kb on + strand, within DZA65_RS04630 at 967.401 kb on - strand, within DZA65_RS04630 at 967.401 kb on - strand, within DZA65_RS04630 at 967.474 kb on + strand, within DZA65_RS04630 at 967.475 kb on - strand, within DZA65_RS04630 at 967.475 kb on - strand, within DZA65_RS04630 at 967.475 kb on - strand, within DZA65_RS04630 at 967.475 kb on - strand, within DZA65_RS04630 at 967.594 kb on + strand, within DZA65_RS04630 at 967.603 kb on + strand, within DZA65_RS04630 at 967.603 kb on + strand, within DZA65_RS04630 at 967.647 kb on + strand at 967.648 kb on - strand at 967.648 kb on - strand at 967.651 kb on + strand at 967.651 kb on + strand at 967.652 kb on - strand at 967.652 kb on - strand at 967.698 kb on + strand at 967.698 kb on + strand at 967.699 kb on - strand at 967.699 kb on - strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.702 kb on + strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.703 kb on - strand at 967.709 kb on + strand at 967.709 kb on + strand at 967.710 kb on - strand at 967.726 kb on + strand at 967.727 kb on - strand at 967.727 kb on - strand at 967.734 kb on - strand at 967.734 kb on - strand at 967.771 kb on + strand at 967.810 kb on + strand at 967.810 kb on + strand at 967.810 kb on + strand at 967.811 kb on - strand at 967.814 kb on - strand at 967.927 kb on + strand at 967.927 kb on + strand at 967.927 kb on + strand at 967.927 kb on + strand at 967.928 kb on - strand at 967.928 kb on - strand at 967.928 kb on - strand at 967.938 kb on + strand at 967.938 kb on + strand at 967.938 kb on + strand at 967.939 kb on - strand at 967.939 kb on - strand at 967.954 kb on + strand at 967.959 kb on + strand at 967.959 kb on + strand at 967.982 kb on - strand at 967.982 kb on - strand at 967.982 kb on - strand at 967.986 kb on + strand at 968.024 kb on + strand at 968.024 kb on + strand at 968.024 kb on + strand at 968.024 kb on + strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.025 kb on - strand at 968.060 kb on + strand at 968.061 kb on - strand at 968.073 kb on + strand at 968.073 kb on + strand at 968.073 kb on + strand at 968.074 kb on - strand at 968.074 kb on - strand at 968.079 kb on + strand at 968.079 kb on + strand at 968.079 kb on + strand at 968.079 kb on + strand at 968.086 kb on + strand at 968.148 kb on + strand at 968.248 kb on + strand at 968.248 kb on + strand at 968.248 kb on + strand at 968.249 kb on - strand at 968.293 kb on + strand at 968.294 kb on - strand at 968.317 kb on + strand at 968.383 kb on - strand at 968.383 kb on - strand at 968.383 kb on - strand at 968.420 kb on - strand at 968.420 kb on - strand at 968.420 kb on - strand at 968.440 kb on + strand at 968.440 kb on + strand at 968.441 kb on - strand at 968.468 kb on + strand at 968.468 kb on + strand at 968.468 kb on + strand at 968.469 kb on - strand at 968.469 kb on - strand at 968.469 kb on - strand at 968.492 kb on + strand, within DZA65_RS04640 at 968.492 kb on + strand, within DZA65_RS04640 at 968.492 kb on + strand, within DZA65_RS04640 at 968.493 kb on - strand, within DZA65_RS04640 at 968.493 kb on - strand, within DZA65_RS04640 at 968.493 kb on - strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.512 kb on + strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.513 kb on - strand, within DZA65_RS04640 at 968.566 kb on + strand, within DZA65_RS04640 at 968.566 kb on + strand, within DZA65_RS04640 at 968.566 kb on + strand at 968.566 kb on + strand, within DZA65_RS04640 at 968.567 kb on - strand, within DZA65_RS04640 at 968.567 kb on - strand, within DZA65_RS04640 at 968.569 kb on + strand, within DZA65_RS04640 at 968.570 kb on - strand, within DZA65_RS04640 at 968.588 kb on + strand, within DZA65_RS04640 at 968.589 kb on - strand, within DZA65_RS04640 at 968.589 kb on - strand, within DZA65_RS04640 at 968.589 kb on - strand, within DZA65_RS04640 at 968.589 kb on - strand, within DZA65_RS04640 at 968.591 kb on + strand, within DZA65_RS04640 at 968.591 kb on + strand, within DZA65_RS04640 at 968.591 kb on + strand, within DZA65_RS04640 at 968.592 kb on - strand, within DZA65_RS04640 at 968.592 kb on - strand, within DZA65_RS04640
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 966,358 + DZA65_RS04615 0.60 +0.9 966,358 + DZA65_RS04615 0.60 -2.1 966,359 - DZA65_RS04615 0.60 +0.6 966,361 + DZA65_RS04615 0.60 +1.3 966,371 + DZA65_RS04615 0.62 -0.3 966,411 - DZA65_RS04615 0.67 +0.7 966,434 + DZA65_RS04615 0.70 -0.2 966,469 + DZA65_RS04615 0.75 -0.1 966,562 + DZA65_RS04615 0.87 +1.6 966,650 + -0.8 966,911 + +1.7 966,936 + +0.3 966,936 + +1.8 966,941 - -1.3 966,968 - -1.3 966,968 - +1.4 966,989 + -0.8 966,991 + +0.6 967,130 + -1.1 967,130 + -0.2 967,130 + -0.1 967,130 + -0.2 967,131 - +1.8 967,131 - -0.3 967,131 - +2.3 967,140 + +0.7 967,205 + DZA65_RS04625 0.47 +0.3 967,206 - DZA65_RS04625 0.48 +0.4 967,265 + DZA65_RS04625 0.85 -0.1 967,266 - DZA65_RS04625 0.86 -0.8 967,266 - DZA65_RS04625 0.86 -0.4 967,266 - DZA65_RS04625 0.86 -1.6 967,266 - DZA65_RS04625 0.86 -0.3 967,400 + DZA65_RS04630 0.15 -1.9 967,400 + DZA65_RS04630 0.15 -0.1 967,401 - DZA65_RS04630 0.15 -0.3 967,401 - DZA65_RS04630 0.15 -1.9 967,474 + DZA65_RS04630 0.41 +0.4 967,475 - DZA65_RS04630 0.41 -0.8 967,475 - DZA65_RS04630 0.41 -2.3 967,475 - DZA65_RS04630 0.41 +0.1 967,475 - DZA65_RS04630 0.41 -1.4 967,594 + DZA65_RS04630 0.84 -0.1 967,603 + DZA65_RS04630 0.87 -1.1 967,603 + DZA65_RS04630 0.87 +0.3 967,647 + -0.5 967,648 - -1.3 967,648 - -0.0 967,651 + -1.0 967,651 + +0.3 967,652 - -0.9 967,652 - -0.0 967,698 + -0.4 967,698 + -0.9 967,699 - -0.6 967,699 - +0.2 967,702 + -0.9 967,702 + +0.9 967,702 + +0.4 967,702 + -0.6 967,702 + -0.8 967,702 + -0.3 967,702 + +0.2 967,702 + -1.9 967,702 + +2.0 967,702 + +0.4 967,702 + -1.0 967,702 + +0.5 967,702 + +0.2 967,703 - -0.2 967,703 - -2.7 967,703 - +0.2 967,703 - -0.6 967,703 - -1.6 967,703 - +0.0 967,703 - -0.8 967,703 - -0.5 967,703 - +0.0 967,703 - -2.4 967,703 - +0.8 967,703 - -0.9 967,703 - -0.2 967,703 - +0.9 967,703 - -0.7 967,703 - -0.3 967,703 - +1.4 967,703 - +0.6 967,703 - -0.6 967,703 - -1.3 967,703 - +0.6 967,709 + -0.2 967,709 + -0.2 967,710 - +0.4 967,726 + -0.7 967,727 - -0.9 967,727 - -0.7 967,734 - -0.1 967,734 - +0.2 967,771 + +1.4 967,810 + -0.0 967,810 + -0.2 967,810 + -0.1 967,811 - +2.1 967,814 - +0.2 967,927 + +0.0 967,927 + +0.4 967,927 + +0.3 967,927 + -1.6 967,928 - +0.4 967,928 - +1.1 967,928 - -0.3 967,938 + +0.1 967,938 + -0.4 967,938 + +0.9 967,939 - -1.6 967,939 - +0.7 967,954 + +0.1 967,959 + -0.2 967,959 + +0.4 967,982 - +0.3 967,982 - -0.8 967,982 - +0.2 967,986 + -0.4 968,024 + -0.7 968,024 + -1.1 968,024 + -0.8 968,024 + -0.8 968,025 - -0.6 968,025 - +0.5 968,025 - +0.9 968,025 - +1.0 968,025 - +0.0 968,025 - -1.4 968,025 - +1.4 968,025 - -0.4 968,060 + -0.2 968,061 - +0.2 968,073 + -1.3 968,073 + -0.6 968,073 + -0.2 968,074 - +0.2 968,074 - -0.1 968,079 + +0.4 968,079 + -1.1 968,079 + -2.4 968,079 + -1.6 968,086 + +0.3 968,148 + +0.9 968,248 + -0.6 968,248 + -0.1 968,248 + -0.1 968,249 - -0.6 968,293 + +0.3 968,294 - +0.1 968,317 + +3.0 968,383 - -1.3 968,383 - -0.6 968,383 - -2.1 968,420 - +0.4 968,420 - -0.0 968,420 - -0.0 968,440 + -0.6 968,440 + -1.0 968,441 - -0.2 968,468 + -0.3 968,468 + -0.7 968,468 + -0.1 968,469 - -1.3 968,469 - +1.0 968,469 - +0.7 968,492 + DZA65_RS04640 0.12 +2.6 968,492 + DZA65_RS04640 0.12 +0.7 968,492 + DZA65_RS04640 0.12 -0.1 968,493 - DZA65_RS04640 0.12 -0.2 968,493 - DZA65_RS04640 0.12 +1.4 968,493 - DZA65_RS04640 0.12 -1.1 968,512 + DZA65_RS04640 0.15 -2.5 968,512 + DZA65_RS04640 0.15 -0.2 968,512 + DZA65_RS04640 0.15 -1.1 968,512 + DZA65_RS04640 0.15 +0.4 968,512 + DZA65_RS04640 0.15 +1.0 968,512 + DZA65_RS04640 0.15 +0.8 968,513 - DZA65_RS04640 0.15 +0.1 968,513 - DZA65_RS04640 0.15 -0.5 968,513 - DZA65_RS04640 0.15 +0.6 968,513 - DZA65_RS04640 0.15 -0.7 968,513 - DZA65_RS04640 0.15 +0.4 968,566 + DZA65_RS04640 0.22 -0.1 968,566 + DZA65_RS04640 0.22 +1.0 968,566 + +1.2 968,566 + DZA65_RS04640 0.22 -1.1 968,567 - DZA65_RS04640 0.23 +0.3 968,567 - DZA65_RS04640 0.23 -0.3 968,569 + DZA65_RS04640 0.23 -2.4 968,570 - DZA65_RS04640 0.23 -0.2 968,588 + DZA65_RS04640 0.25 +0.9 968,589 - DZA65_RS04640 0.26 +0.6 968,589 - DZA65_RS04640 0.26 -0.7 968,589 - DZA65_RS04640 0.26 +1.0 968,589 - DZA65_RS04640 0.26 -1.9 968,591 + DZA65_RS04640 0.26 +0.6 968,591 + DZA65_RS04640 0.26 -0.0 968,591 + DZA65_RS04640 0.26 -0.6 968,592 - DZA65_RS04640 0.26 -3.1 968,592 - DZA65_RS04640 0.26 -1.0
Or see this region's nucleotide sequence