Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04440

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04425 and DZA65_RS04430 are separated by 106 nucleotidesDZA65_RS04430 and DZA65_RS04440 are separated by 249 nucleotidesDZA65_RS04440 and DZA65_RS04445 are separated by 30 nucleotides DZA65_RS04425: DZA65_RS04425 - LysR family transcriptional regulator, at 924,707 to 925,573 _RS04425 DZA65_RS04430: DZA65_RS04430 - multidrug/biocide efflux PACE transporter, at 925,680 to 926,147 _RS04430 DZA65_RS04440: DZA65_RS04440 - DNA oxidative demethylase AlkB, at 926,397 to 927,050 _RS04440 DZA65_RS04445: DZA65_RS04445 - FAD-dependent oxidoreductase, at 927,081 to 928,652 _RS04445 Position (kb) 926 927 928Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 925.525 kb on + strandat 925.611 kb on - strandat 925.623 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.680 kb on - strandat 925.790 kb on - strand, within DZA65_RS04430at 925.878 kb on + strand, within DZA65_RS04430at 925.879 kb on - strand, within DZA65_RS04430at 925.879 kb on - strand, within DZA65_RS04430at 925.879 kb on - strand, within DZA65_RS04430at 925.973 kb on + strand, within DZA65_RS04430at 925.974 kb on - strand, within DZA65_RS04430at 926.012 kb on + strand, within DZA65_RS04430at 926.013 kb on - strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.073 kb on - strandat 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.146 kb on - strandat 926.180 kb on - strandat 926.310 kb on - strandat 926.325 kb on + strandat 926.359 kb on + strandat 926.359 kb on + strandat 926.359 kb on + strandat 926.360 kb on - strandat 926.360 kb on - strandat 926.360 kb on - strandat 926.570 kb on + strand, within DZA65_RS04440at 926.570 kb on + strand, within DZA65_RS04440at 926.570 kb on + strandat 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.637 kb on + strand, within DZA65_RS04440at 926.638 kb on - strand, within DZA65_RS04440at 926.958 kb on + strand, within DZA65_RS04440at 926.958 kb on + strand, within DZA65_RS04440at 926.959 kb on - strand, within DZA65_RS04440at 926.959 kb on - strand, within DZA65_RS04440at 926.961 kb on + strand, within DZA65_RS04440at 926.961 kb on + strand, within DZA65_RS04440at 926.962 kb on - strand, within DZA65_RS04440at 926.962 kb on - strand, within DZA65_RS04440at 926.962 kb on - strand, within DZA65_RS04440at 927.026 kb on + strandat 927.027 kb on - strandat 927.027 kb on - strandat 927.027 kb on - strandat 927.082 kb on + strandat 927.103 kb on + strandat 927.103 kb on + strandat 927.104 kb on - strandat 927.181 kb on + strandat 927.181 kb on + strandat 927.181 kb on + strandat 927.181 kb on + strandat 927.181 kb on + strandat 927.182 kb on - strandat 927.182 kb on - strandat 927.193 kb on + strandat 927.193 kb on + strandat 927.193 kb on + strandat 927.193 kb on + strandat 927.193 kb on + strandat 927.194 kb on - strandat 927.194 kb on - strandat 927.223 kb on + strandat 927.223 kb on + strandat 927.223 kb on + strandat 927.223 kb on + strandat 927.224 kb on - strandat 927.328 kb on + strand, within DZA65_RS04445at 927.359 kb on - strand, within DZA65_RS04445at 927.359 kb on - strand, within DZA65_RS04445at 927.359 kb on - strand, within DZA65_RS04445at 927.365 kb on + strand, within DZA65_RS04445at 927.365 kb on + strand, within DZA65_RS04445at 927.366 kb on - strand, within DZA65_RS04445at 927.582 kb on + strand, within DZA65_RS04445at 927.583 kb on - strand, within DZA65_RS04445at 927.583 kb on - strand, within DZA65_RS04445at 927.637 kb on + strand, within DZA65_RS04445at 927.637 kb on + strand, within DZA65_RS04445at 927.637 kb on + strand, within DZA65_RS04445at 927.637 kb on + strand, within DZA65_RS04445at 927.637 kb on + strand, within DZA65_RS04445at 927.637 kb on + strand, within DZA65_RS04445at 927.638 kb on - strand, within DZA65_RS04445at 927.638 kb on - strand, within DZA65_RS04445at 927.638 kb on - strand, within DZA65_RS04445at 927.638 kb on - strand, within DZA65_RS04445at 927.638 kb on - strand, within DZA65_RS04445at 927.638 kb on - strand, within DZA65_RS04445at 927.686 kb on + strand, within DZA65_RS04445at 927.686 kb on + strand, within DZA65_RS04445at 927.687 kb on - strand, within DZA65_RS04445at 927.687 kb on - strand, within DZA65_RS04445at 927.687 kb on - strand, within DZA65_RS04445at 927.739 kb on + strand, within DZA65_RS04445at 927.740 kb on - strand, within DZA65_RS04445at 927.740 kb on - strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strand, within DZA65_RS04445at 927.810 kb on + strandat 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.811 kb on - strand, within DZA65_RS04445at 927.813 kb on + strand, within DZA65_RS04445at 927.813 kb on + strand, within DZA65_RS04445at 927.814 kb on - strand, within DZA65_RS04445at 927.814 kb on - strand, within DZA65_RS04445at 927.916 kb on + strand, within DZA65_RS04445at 927.916 kb on + strand, within DZA65_RS04445at 927.916 kb on + strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.917 kb on - strand, within DZA65_RS04445at 927.961 kb on - strand, within DZA65_RS04445at 927.974 kb on + strand, within DZA65_RS04445at 927.975 kb on - strand, within DZA65_RS04445at 927.975 kb on - strand, within DZA65_RS04445at 927.975 kb on - strand, within DZA65_RS04445at 927.981 kb on + strand, within DZA65_RS04445at 927.982 kb on - strand, within DZA65_RS04445at 927.982 kb on - strand, within DZA65_RS04445at 927.982 kb on - strand, within DZA65_RS04445

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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925,525 + -1.5
925,611 - +0.2
925,623 + +1.6
925,679 + -0.1
925,679 + -1.1
925,679 + -0.5
925,679 + -0.5
925,679 + +0.6
925,679 + -0.5
925,679 + +1.5
925,680 - +0.1
925,790 - DZA65_RS04430 0.24 +0.5
925,878 + DZA65_RS04430 0.42 +0.6
925,879 - DZA65_RS04430 0.43 -0.2
925,879 - DZA65_RS04430 0.43 -0.3
925,879 - DZA65_RS04430 0.43 +0.2
925,973 + DZA65_RS04430 0.63 -0.2
925,974 - DZA65_RS04430 0.63 -0.6
926,012 + DZA65_RS04430 0.71 +0.8
926,013 - DZA65_RS04430 0.71 -0.0
926,070 + DZA65_RS04430 0.83 +2.0
926,070 + DZA65_RS04430 0.83 -0.1
926,070 + DZA65_RS04430 0.83 +0.6
926,070 + DZA65_RS04430 0.83 -0.1
926,070 + DZA65_RS04430 0.83 +0.2
926,071 - DZA65_RS04430 0.84 +1.6
926,071 - DZA65_RS04430 0.84 -1.8
926,071 - DZA65_RS04430 0.84 -1.8
926,071 - DZA65_RS04430 0.84 -0.2
926,071 - DZA65_RS04430 0.84 +0.3
926,071 - DZA65_RS04430 0.84 -0.4
926,072 + DZA65_RS04430 0.84 +1.7
926,072 + DZA65_RS04430 0.84 -0.9
926,072 + DZA65_RS04430 0.84 -0.5
926,072 + DZA65_RS04430 0.84 +0.2
926,072 + DZA65_RS04430 0.84 +0.2
926,073 - +0.5
926,082 + DZA65_RS04430 0.86 -0.3
926,082 + DZA65_RS04430 0.86 +1.4
926,082 + DZA65_RS04430 0.86 +0.5
926,082 + DZA65_RS04430 0.86 +1.2
926,082 + DZA65_RS04430 0.86 +1.2
926,082 + DZA65_RS04430 0.86 +1.6
926,082 + DZA65_RS04430 0.86 -0.4
926,083 - DZA65_RS04430 0.86 -1.8
926,083 - DZA65_RS04430 0.86 -0.3
926,083 - DZA65_RS04430 0.86 +0.1
926,083 - DZA65_RS04430 0.86 +0.1
926,083 - DZA65_RS04430 0.86 +0.2
926,146 - -1.0
926,180 - +0.4
926,310 - +1.8
926,325 + -0.5
926,359 + +0.2
926,359 + -0.2
926,359 + -0.0
926,360 - +1.2
926,360 - +0.5
926,360 - -0.5
926,570 + DZA65_RS04440 0.26 +0.5
926,570 + DZA65_RS04440 0.26 -0.6
926,570 + -0.5
926,571 - DZA65_RS04440 0.27 -0.5
926,571 - DZA65_RS04440 0.27 -0.1
926,571 - DZA65_RS04440 0.27 -0.3
926,571 - DZA65_RS04440 0.27 -0.5
926,571 - DZA65_RS04440 0.27 +0.3
926,571 - DZA65_RS04440 0.27 +0.1
926,571 - DZA65_RS04440 0.27 -1.5
926,571 - DZA65_RS04440 0.27 -0.5
926,571 - DZA65_RS04440 0.27 +0.8
926,637 + DZA65_RS04440 0.37 -0.6
926,638 - DZA65_RS04440 0.37 -0.7
926,958 + DZA65_RS04440 0.86 +0.5
926,958 + DZA65_RS04440 0.86 +0.8
926,959 - DZA65_RS04440 0.86 +0.1
926,959 - DZA65_RS04440 0.86 -0.5
926,961 + DZA65_RS04440 0.86 +0.3
926,961 + DZA65_RS04440 0.86 -1.8
926,962 - DZA65_RS04440 0.86 -0.7
926,962 - DZA65_RS04440 0.86 +0.8
926,962 - DZA65_RS04440 0.86 -0.2
927,026 + +1.2
927,027 - +1.1
927,027 - -0.5
927,027 - +1.0
927,082 + -0.5
927,103 + +1.3
927,103 + +0.1
927,104 - +0.3
927,181 + +1.3
927,181 + -0.3
927,181 + +1.0
927,181 + +0.0
927,181 + +0.4
927,182 - +1.9
927,182 - +0.5
927,193 + -1.3
927,193 + -0.6
927,193 + +0.3
927,193 + +1.3
927,193 + +1.0
927,194 - -0.3
927,194 - -0.7
927,223 + -0.3
927,223 + +0.8
927,223 + -0.1
927,223 + -0.4
927,224 - -0.3
927,328 + DZA65_RS04445 0.16 -1.1
927,359 - DZA65_RS04445 0.18 +0.9
927,359 - DZA65_RS04445 0.18 +0.1
927,359 - DZA65_RS04445 0.18 +1.5
927,365 + DZA65_RS04445 0.18 -0.5
927,365 + DZA65_RS04445 0.18 -0.5
927,366 - DZA65_RS04445 0.18 -0.5
927,582 + DZA65_RS04445 0.32 +2.9
927,583 - DZA65_RS04445 0.32 -0.1
927,583 - DZA65_RS04445 0.32 -0.1
927,637 + DZA65_RS04445 0.35 +3.0
927,637 + DZA65_RS04445 0.35 +0.5
927,637 + DZA65_RS04445 0.35 -0.3
927,637 + DZA65_RS04445 0.35 -0.3
927,637 + DZA65_RS04445 0.35 +0.5
927,637 + DZA65_RS04445 0.35 +0.5
927,638 - DZA65_RS04445 0.35 -1.8
927,638 - DZA65_RS04445 0.35 -0.5
927,638 - DZA65_RS04445 0.35 -0.7
927,638 - DZA65_RS04445 0.35 -1.2
927,638 - DZA65_RS04445 0.35 +0.3
927,638 - DZA65_RS04445 0.35 -0.1
927,686 + DZA65_RS04445 0.38 -0.6
927,686 + DZA65_RS04445 0.38 +0.7
927,687 - DZA65_RS04445 0.39 -0.2
927,687 - DZA65_RS04445 0.39 -0.7
927,687 - DZA65_RS04445 0.39 -2.3
927,739 + DZA65_RS04445 0.42 +0.5
927,740 - DZA65_RS04445 0.42 +0.8
927,740 - DZA65_RS04445 0.42 -0.8
927,810 + DZA65_RS04445 0.46 +0.1
927,810 + DZA65_RS04445 0.46 +0.2
927,810 + DZA65_RS04445 0.46 +0.2
927,810 + DZA65_RS04445 0.46 +0.2
927,810 + DZA65_RS04445 0.46 +0.2
927,810 + DZA65_RS04445 0.46 -0.2
927,810 + DZA65_RS04445 0.46 +0.7
927,810 + DZA65_RS04445 0.46 -0.0
927,810 + DZA65_RS04445 0.46 +2.1
927,810 + -0.5
927,811 - DZA65_RS04445 0.46 +1.6
927,811 - DZA65_RS04445 0.46 -1.9
927,811 - DZA65_RS04445 0.46 +0.1
927,811 - DZA65_RS04445 0.46 -1.2
927,811 - DZA65_RS04445 0.46 -0.2
927,811 - DZA65_RS04445 0.46 -0.1
927,811 - DZA65_RS04445 0.46 +0.6
927,811 - DZA65_RS04445 0.46 -0.5
927,811 - DZA65_RS04445 0.46 +0.4
927,811 - DZA65_RS04445 0.46 +0.5
927,811 - DZA65_RS04445 0.46 -0.1
927,811 - DZA65_RS04445 0.46 +2.9
927,811 - DZA65_RS04445 0.46 -0.2
927,811 - DZA65_RS04445 0.46 -0.2
927,811 - DZA65_RS04445 0.46 +0.6
927,813 + DZA65_RS04445 0.47 +0.8
927,813 + DZA65_RS04445 0.47 -0.8
927,814 - DZA65_RS04445 0.47 -0.7
927,814 - DZA65_RS04445 0.47 +0.6
927,916 + DZA65_RS04445 0.53 -0.1
927,916 + DZA65_RS04445 0.53 +1.5
927,916 + DZA65_RS04445 0.53 -0.5
927,917 - DZA65_RS04445 0.53 +0.3
927,917 - DZA65_RS04445 0.53 -0.5
927,917 - DZA65_RS04445 0.53 +0.5
927,917 - DZA65_RS04445 0.53 +1.2
927,917 - DZA65_RS04445 0.53 +0.2
927,917 - DZA65_RS04445 0.53 -1.5
927,961 - DZA65_RS04445 0.56 -0.7
927,974 + DZA65_RS04445 0.57 -1.1
927,975 - DZA65_RS04445 0.57 -1.1
927,975 - DZA65_RS04445 0.57 +0.2
927,975 - DZA65_RS04445 0.57 +0.8
927,981 + DZA65_RS04445 0.57 -0.5
927,982 - DZA65_RS04445 0.57 +0.2
927,982 - DZA65_RS04445 0.57 -0.7
927,982 - DZA65_RS04445 0.57 -2.8

Or see this region's nucleotide sequence