Experiment: Upstate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04410 and DZA65_RS04415 are separated by 162 nucleotides DZA65_RS04415 and DZA65_RS04420 are separated by 45 nucleotides
DZA65_RS04410: DZA65_RS04410 - anaerobic nitric oxide reductase flavorubredoxin, at 919,379 to 920,878
_RS04410
DZA65_RS04415: DZA65_RS04415 - nitric oxide reductase transcriptional regulator NorR, at 921,041 to 922,567
_RS04415
DZA65_RS04420: DZA65_RS04420 - fumarate hydratase, at 922,613 to 924,256
_RS04420
Position (kb) 921
922
923 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 920.106 kb on + strand, within DZA65_RS04410 at 920.107 kb on - strand, within DZA65_RS04410 at 920.107 kb on - strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.133 kb on + strand, within DZA65_RS04410 at 920.134 kb on - strand, within DZA65_RS04410 at 920.134 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.155 kb on - strand, within DZA65_RS04410 at 920.164 kb on + strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.165 kb on - strand, within DZA65_RS04410 at 920.231 kb on - strand, within DZA65_RS04410 at 920.287 kb on + strand, within DZA65_RS04410 at 920.288 kb on - strand, within DZA65_RS04410 at 920.288 kb on - strand, within DZA65_RS04410 at 920.299 kb on - strand, within DZA65_RS04410 at 920.299 kb on - strand, within DZA65_RS04410 at 920.364 kb on + strand, within DZA65_RS04410 at 920.364 kb on + strand, within DZA65_RS04410 at 920.365 kb on - strand, within DZA65_RS04410 at 920.365 kb on - strand, within DZA65_RS04410 at 920.365 kb on - strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.413 kb on + strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.414 kb on - strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.415 kb on + strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.416 kb on - strand, within DZA65_RS04410 at 920.577 kb on + strand, within DZA65_RS04410 at 920.577 kb on + strand, within DZA65_RS04410 at 920.658 kb on + strand, within DZA65_RS04410 at 920.658 kb on + strand, within DZA65_RS04410 at 920.658 kb on + strand, within DZA65_RS04410 at 920.659 kb on - strand, within DZA65_RS04410 at 920.699 kb on + strand, within DZA65_RS04410 at 920.699 kb on + strand, within DZA65_RS04410 at 920.700 kb on - strand, within DZA65_RS04410 at 920.767 kb on - strand at 920.767 kb on - strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.773 kb on + strand at 920.774 kb on - strand at 920.774 kb on - strand at 920.774 kb on - strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.775 kb on + strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.776 kb on - strand at 920.799 kb on + strand at 920.800 kb on - strand at 920.854 kb on + strand at 920.855 kb on - strand at 920.864 kb on - strand at 920.864 kb on - strand at 920.872 kb on + strand at 920.872 kb on + strand at 920.873 kb on - strand at 920.881 kb on + strand at 920.882 kb on - strand at 920.898 kb on + strand at 920.902 kb on - strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.911 kb on + strand at 920.912 kb on - strand at 920.912 kb on - strand at 920.912 kb on - strand at 920.912 kb on - strand at 920.912 kb on - strand at 920.912 kb on - strand at 921.020 kb on + strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.021 kb on - strand at 921.054 kb on + strand at 921.054 kb on + strand at 921.054 kb on + strand at 921.055 kb on - strand at 921.055 kb on - strand at 921.055 kb on - strand at 921.055 kb on - strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.147 kb on + strand at 921.148 kb on - strand at 921.148 kb on - strand at 921.177 kb on - strand at 921.332 kb on + strand, within DZA65_RS04415 at 921.333 kb on - strand, within DZA65_RS04415 at 921.333 kb on - strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.670 kb on + strand, within DZA65_RS04415 at 921.764 kb on + strand, within DZA65_RS04415 at 921.764 kb on + strand, within DZA65_RS04415 at 921.844 kb on + strand, within DZA65_RS04415 at 921.886 kb on + strand, within DZA65_RS04415 at 921.886 kb on + strand, within DZA65_RS04415 at 921.887 kb on - strand, within DZA65_RS04415 at 921.988 kb on + strand, within DZA65_RS04415 at 922.035 kb on + strand, within DZA65_RS04415 at 922.035 kb on + strand, within DZA65_RS04415 at 922.035 kb on + strand, within DZA65_RS04415 at 922.035 kb on + strand, within DZA65_RS04415 at 922.036 kb on - strand, within DZA65_RS04415 at 922.036 kb on - strand, within DZA65_RS04415 at 922.036 kb on - strand, within DZA65_RS04415 at 922.036 kb on - strand, within DZA65_RS04415 at 922.188 kb on + strand, within DZA65_RS04415 at 922.189 kb on - strand, within DZA65_RS04415 at 922.442 kb on + strand at 922.442 kb on + strand at 922.442 kb on + strand at 922.555 kb on - strand at 922.555 kb on - strand at 922.560 kb on + strand at 922.560 kb on + strand at 922.831 kb on + strand, within DZA65_RS04420 at 922.917 kb on + strand, within DZA65_RS04420 at 922.917 kb on + strand, within DZA65_RS04420 at 922.918 kb on - strand, within DZA65_RS04420 at 922.918 kb on - strand, within DZA65_RS04420 at 922.918 kb on - strand, within DZA65_RS04420 at 922.966 kb on - strand, within DZA65_RS04420 at 922.995 kb on + strand, within DZA65_RS04420 at 922.995 kb on + strand at 922.995 kb on + strand, within DZA65_RS04420 at 922.995 kb on + strand, within DZA65_RS04420 at 922.999 kb on - strand, within DZA65_RS04420 at 923.019 kb on + strand, within DZA65_RS04420 at 923.223 kb on + strand, within DZA65_RS04420 at 923.223 kb on + strand, within DZA65_RS04420 at 923.223 kb on + strand, within DZA65_RS04420 at 923.223 kb on + strand, within DZA65_RS04420 at 923.224 kb on - strand at 923.224 kb on - strand at 923.224 kb on - strand, within DZA65_RS04420 at 923.224 kb on - strand, within DZA65_RS04420 at 923.224 kb on - strand, within DZA65_RS04420 at 923.224 kb on - strand, within DZA65_RS04420 at 923.379 kb on + strand, within DZA65_RS04420 at 923.380 kb on - strand, within DZA65_RS04420 at 923.500 kb on - strand, within DZA65_RS04420 at 923.502 kb on + strand, within DZA65_RS04420 at 923.503 kb on - strand, within DZA65_RS04420
Per-strain Table
Position Strand Gene LocusTag Fraction Upstate remove 920,106 + DZA65_RS04410 0.48 -0.1 920,107 - DZA65_RS04410 0.49 +0.4 920,107 - DZA65_RS04410 0.49 +0.6 920,133 + DZA65_RS04410 0.50 -1.7 920,133 + DZA65_RS04410 0.50 -0.4 920,133 + DZA65_RS04410 0.50 +0.7 920,133 + DZA65_RS04410 0.50 +3.4 920,133 + DZA65_RS04410 0.50 -1.4 920,133 + DZA65_RS04410 0.50 -0.0 920,134 - DZA65_RS04410 0.50 -0.3 920,134 - DZA65_RS04410 0.50 -0.2 920,155 - DZA65_RS04410 0.52 -0.5 920,155 - DZA65_RS04410 0.52 -0.9 920,155 - DZA65_RS04410 0.52 -1.5 920,155 - DZA65_RS04410 0.52 -1.1 920,155 - DZA65_RS04410 0.52 -0.3 920,155 - DZA65_RS04410 0.52 -0.3 920,164 + DZA65_RS04410 0.52 -0.8 920,165 - DZA65_RS04410 0.52 -0.5 920,165 - DZA65_RS04410 0.52 -1.8 920,165 - DZA65_RS04410 0.52 +1.8 920,165 - DZA65_RS04410 0.52 +0.7 920,165 - DZA65_RS04410 0.52 -0.8 920,231 - DZA65_RS04410 0.57 -1.2 920,287 + DZA65_RS04410 0.61 -0.7 920,288 - DZA65_RS04410 0.61 -0.5 920,288 - DZA65_RS04410 0.61 -0.3 920,299 - DZA65_RS04410 0.61 -0.5 920,299 - DZA65_RS04410 0.61 +0.3 920,364 + DZA65_RS04410 0.66 +1.7 920,364 + DZA65_RS04410 0.66 +0.1 920,365 - DZA65_RS04410 0.66 +0.2 920,365 - DZA65_RS04410 0.66 -0.2 920,365 - DZA65_RS04410 0.66 +0.6 920,413 + DZA65_RS04410 0.69 +0.1 920,413 + DZA65_RS04410 0.69 +0.7 920,413 + DZA65_RS04410 0.69 +0.5 920,413 + DZA65_RS04410 0.69 +0.1 920,413 + DZA65_RS04410 0.69 +0.3 920,413 + DZA65_RS04410 0.69 +1.0 920,414 - DZA65_RS04410 0.69 -1.8 920,414 - DZA65_RS04410 0.69 -0.6 920,414 - DZA65_RS04410 0.69 -0.2 920,414 - DZA65_RS04410 0.69 +1.3 920,414 - DZA65_RS04410 0.69 -0.8 920,414 - DZA65_RS04410 0.69 -0.6 920,415 + DZA65_RS04410 0.69 -0.3 920,415 + DZA65_RS04410 0.69 +2.8 920,415 + DZA65_RS04410 0.69 +0.1 920,415 + DZA65_RS04410 0.69 +0.5 920,415 + DZA65_RS04410 0.69 -0.4 920,415 + DZA65_RS04410 0.69 +0.1 920,415 + DZA65_RS04410 0.69 +0.5 920,415 + DZA65_RS04410 0.69 -0.2 920,415 + DZA65_RS04410 0.69 +1.3 920,415 + DZA65_RS04410 0.69 +0.6 920,415 + DZA65_RS04410 0.69 -1.7 920,415 + DZA65_RS04410 0.69 +0.1 920,415 + DZA65_RS04410 0.69 +0.1 920,415 + DZA65_RS04410 0.69 +0.3 920,415 + DZA65_RS04410 0.69 -0.3 920,415 + DZA65_RS04410 0.69 +0.4 920,415 + DZA65_RS04410 0.69 -1.3 920,415 + DZA65_RS04410 0.69 -0.2 920,415 + DZA65_RS04410 0.69 -0.2 920,415 + DZA65_RS04410 0.69 -1.2 920,415 + DZA65_RS04410 0.69 -0.7 920,416 - DZA65_RS04410 0.69 -0.2 920,416 - DZA65_RS04410 0.69 -1.0 920,416 - DZA65_RS04410 0.69 -0.4 920,416 - DZA65_RS04410 0.69 +0.1 920,416 - DZA65_RS04410 0.69 -0.2 920,416 - DZA65_RS04410 0.69 -0.3 920,416 - DZA65_RS04410 0.69 +2.8 920,416 - DZA65_RS04410 0.69 -0.2 920,416 - DZA65_RS04410 0.69 -0.3 920,416 - DZA65_RS04410 0.69 +1.4 920,416 - DZA65_RS04410 0.69 +0.0 920,416 - DZA65_RS04410 0.69 -0.5 920,416 - DZA65_RS04410 0.69 +1.6 920,416 - DZA65_RS04410 0.69 -0.8 920,416 - DZA65_RS04410 0.69 +0.1 920,416 - DZA65_RS04410 0.69 +0.8 920,416 - DZA65_RS04410 0.69 +0.3 920,416 - DZA65_RS04410 0.69 -0.3 920,416 - DZA65_RS04410 0.69 -0.3 920,416 - DZA65_RS04410 0.69 -0.1 920,416 - DZA65_RS04410 0.69 -0.4 920,416 - DZA65_RS04410 0.69 -0.6 920,416 - DZA65_RS04410 0.69 +0.1 920,416 - DZA65_RS04410 0.69 -3.0 920,416 - DZA65_RS04410 0.69 -0.6 920,416 - DZA65_RS04410 0.69 -3.0 920,577 + DZA65_RS04410 0.80 +0.2 920,577 + DZA65_RS04410 0.80 +0.1 920,658 + DZA65_RS04410 0.85 -0.1 920,658 + DZA65_RS04410 0.85 +1.0 920,658 + DZA65_RS04410 0.85 +0.1 920,659 - DZA65_RS04410 0.85 -0.5 920,699 + DZA65_RS04410 0.88 -0.8 920,699 + DZA65_RS04410 0.88 -0.5 920,700 - DZA65_RS04410 0.88 -0.0 920,767 - +1.7 920,767 - -1.5 920,773 + -0.9 920,773 + -0.9 920,773 + +0.3 920,773 + -0.2 920,773 + +0.5 920,773 + +1.1 920,773 + +0.1 920,774 - +0.8 920,774 - +0.1 920,774 - +1.3 920,775 + +0.1 920,775 + -1.1 920,775 + +0.2 920,775 + -0.0 920,775 + -0.2 920,775 + -0.0 920,776 - -0.5 920,776 - +1.1 920,776 - -0.3 920,776 - +1.7 920,776 - -1.1 920,776 - -0.5 920,776 - -0.3 920,776 - -0.1 920,776 - +0.0 920,776 - +0.9 920,776 - +0.8 920,776 - -1.8 920,799 + +0.2 920,800 - +0.1 920,854 + +1.2 920,855 - -0.3 920,864 - -0.5 920,864 - +1.5 920,872 + +0.5 920,872 + -0.8 920,873 - -0.8 920,881 + +1.1 920,882 - -1.5 920,898 + +0.2 920,902 - -0.3 920,911 + -0.4 920,911 + -1.6 920,911 + +0.1 920,911 + +1.9 920,911 + +0.2 920,911 + -0.2 920,911 + -0.3 920,911 + -0.5 920,911 + -0.2 920,912 - -1.5 920,912 - -0.5 920,912 - -0.5 920,912 - -2.2 920,912 - -0.1 920,912 - -0.9 921,020 + -1.6 921,021 - +0.5 921,021 - +0.8 921,021 - +1.5 921,021 - -0.1 921,054 + +0.7 921,054 + -0.7 921,054 + +1.3 921,055 - -0.3 921,055 - -0.3 921,055 - +0.5 921,055 - -0.0 921,147 + -0.1 921,147 + +0.3 921,147 + -0.9 921,147 + -0.8 921,147 + +0.2 921,147 + -0.1 921,148 - -0.2 921,148 - +0.1 921,177 - +0.9 921,332 + DZA65_RS04415 0.19 -0.5 921,333 - DZA65_RS04415 0.19 -2.5 921,333 - DZA65_RS04415 0.19 -1.4 921,670 + DZA65_RS04415 0.41 -0.2 921,670 + DZA65_RS04415 0.41 +0.5 921,670 + DZA65_RS04415 0.41 -0.6 921,670 + DZA65_RS04415 0.41 +0.3 921,670 + DZA65_RS04415 0.41 +1.1 921,764 + DZA65_RS04415 0.47 +0.1 921,764 + DZA65_RS04415 0.47 -1.0 921,844 + DZA65_RS04415 0.53 -1.8 921,886 + DZA65_RS04415 0.55 +0.6 921,886 + DZA65_RS04415 0.55 +0.5 921,887 - DZA65_RS04415 0.55 +0.1 921,988 + DZA65_RS04415 0.62 -1.6 922,035 + DZA65_RS04415 0.65 -1.3 922,035 + DZA65_RS04415 0.65 -0.8 922,035 + DZA65_RS04415 0.65 -0.5 922,035 + DZA65_RS04415 0.65 -0.3 922,036 - DZA65_RS04415 0.65 -1.8 922,036 - DZA65_RS04415 0.65 -0.8 922,036 - DZA65_RS04415 0.65 +0.5 922,036 - DZA65_RS04415 0.65 -0.7 922,188 + DZA65_RS04415 0.75 +2.5 922,189 - DZA65_RS04415 0.75 +0.6 922,442 + +0.8 922,442 + -0.6 922,442 + +1.7 922,555 - +0.5 922,555 - +2.1 922,560 + -0.3 922,560 + -1.7 922,831 + DZA65_RS04420 0.13 -1.4 922,917 + DZA65_RS04420 0.18 -0.2 922,917 + DZA65_RS04420 0.18 -2.8 922,918 - DZA65_RS04420 0.19 +0.9 922,918 - DZA65_RS04420 0.19 -0.1 922,918 - DZA65_RS04420 0.19 +1.0 922,966 - DZA65_RS04420 0.21 -1.5 922,995 + DZA65_RS04420 0.23 +0.5 922,995 + +0.1 922,995 + DZA65_RS04420 0.23 -0.7 922,995 + DZA65_RS04420 0.23 -2.0 922,999 - DZA65_RS04420 0.23 -1.7 923,019 + DZA65_RS04420 0.25 -1.3 923,223 + DZA65_RS04420 0.37 +0.1 923,223 + DZA65_RS04420 0.37 -0.7 923,223 + DZA65_RS04420 0.37 +0.2 923,223 + DZA65_RS04420 0.37 +0.6 923,224 - +1.5 923,224 - +0.5 923,224 - DZA65_RS04420 0.37 +0.4 923,224 - DZA65_RS04420 0.37 -1.1 923,224 - DZA65_RS04420 0.37 -2.3 923,224 - DZA65_RS04420 0.37 +0.7 923,379 + DZA65_RS04420 0.47 -0.1 923,380 - DZA65_RS04420 0.47 -0.5 923,500 - DZA65_RS04420 0.54 -0.8 923,502 + DZA65_RS04420 0.54 +0.5 923,503 - DZA65_RS04420 0.54 +0.9
Or see this region's nucleotide sequence