Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS03330

Experiment: Upstate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS03325 and DZA65_RS03330 are separated by 1 nucleotidesDZA65_RS03330 and DZA65_RS03335 overlap by 1 nucleotidesDZA65_RS03335 and DZA65_RS03340 are separated by 2 nucleotides DZA65_RS03325: DZA65_RS03325 - ATP-grasp domain-containing protein, at 704,391 to 705,629 _RS03325 DZA65_RS03330: DZA65_RS03330 - EamA family transporter, at 705,631 to 706,563 _RS03330 DZA65_RS03335: DZA65_RS03335 - YggS family pyridoxal phosphate-dependent enzyme, at 706,563 to 707,222 _RS03335 DZA65_RS03340: DZA65_RS03340 - adenine phosphoribosyltransferase, at 707,225 to 707,785 _RS03340 Position (kb) 705 706 707Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 704.658 kb on - strand, within DZA65_RS03325at 704.713 kb on - strand, within DZA65_RS03325at 704.769 kb on + strand, within DZA65_RS03325at 704.817 kb on - strand, within DZA65_RS03325at 704.882 kb on + strand, within DZA65_RS03325at 704.883 kb on - strand, within DZA65_RS03325at 704.884 kb on + strand, within DZA65_RS03325at 704.885 kb on - strand, within DZA65_RS03325at 704.949 kb on - strand, within DZA65_RS03325at 705.064 kb on - strand, within DZA65_RS03325at 705.226 kb on - strand, within DZA65_RS03325at 705.374 kb on + strand, within DZA65_RS03325at 705.452 kb on + strand, within DZA65_RS03325at 705.493 kb on + strand, within DZA65_RS03325at 705.511 kb on + strandat 705.512 kb on - strandat 705.542 kb on + strandat 705.542 kb on + strandat 705.543 kb on - strandat 705.543 kb on - strandat 705.549 kb on + strandat 705.578 kb on + strandat 705.584 kb on + strandat 705.785 kb on - strand, within DZA65_RS03330at 705.799 kb on + strand, within DZA65_RS03330at 705.799 kb on + strand, within DZA65_RS03330at 705.799 kb on + strand, within DZA65_RS03330at 705.799 kb on + strand, within DZA65_RS03330at 705.800 kb on - strand, within DZA65_RS03330at 705.841 kb on - strand, within DZA65_RS03330at 705.844 kb on + strand, within DZA65_RS03330at 705.845 kb on - strand, within DZA65_RS03330at 705.847 kb on - strand, within DZA65_RS03330at 705.847 kb on - strand, within DZA65_RS03330at 705.913 kb on - strand, within DZA65_RS03330at 705.918 kb on + strand, within DZA65_RS03330at 705.919 kb on - strand, within DZA65_RS03330at 705.919 kb on - strand, within DZA65_RS03330at 705.940 kb on + strand, within DZA65_RS03330at 705.956 kb on - strand, within DZA65_RS03330at 706.039 kb on + strand, within DZA65_RS03330at 706.097 kb on - strand, within DZA65_RS03330at 706.138 kb on + strand, within DZA65_RS03330at 706.219 kb on + strand, within DZA65_RS03330at 706.221 kb on + strand, within DZA65_RS03330at 706.222 kb on - strand, within DZA65_RS03330at 706.222 kb on - strand, within DZA65_RS03330at 706.226 kb on - strand, within DZA65_RS03330at 706.226 kb on - strand, within DZA65_RS03330at 706.226 kb on - strand, within DZA65_RS03330at 706.231 kb on + strand, within DZA65_RS03330at 706.279 kb on + strand, within DZA65_RS03330at 706.298 kb on - strand, within DZA65_RS03330at 706.345 kb on + strand, within DZA65_RS03330at 706.346 kb on - strand, within DZA65_RS03330at 706.392 kb on + strand, within DZA65_RS03330at 706.415 kb on - strand, within DZA65_RS03330at 706.507 kb on - strandat 706.716 kb on + strand, within DZA65_RS03335at 706.731 kb on - strand, within DZA65_RS03335at 706.739 kb on + strand, within DZA65_RS03335at 706.740 kb on - strand, within DZA65_RS03335at 706.761 kb on + strand, within DZA65_RS03335at 706.913 kb on + strand, within DZA65_RS03335at 706.913 kb on + strand, within DZA65_RS03335at 706.914 kb on - strand, within DZA65_RS03335at 706.917 kb on + strand, within DZA65_RS03335at 706.917 kb on + strand, within DZA65_RS03335at 706.917 kb on + strand, within DZA65_RS03335at 706.936 kb on - strand, within DZA65_RS03335at 707.061 kb on - strand, within DZA65_RS03335at 707.189 kb on - strandat 707.189 kb on - strandat 707.207 kb on + strandat 707.276 kb on + strandat 707.276 kb on + strandat 707.346 kb on - strand, within DZA65_RS03340at 707.385 kb on - strand, within DZA65_RS03340at 707.431 kb on + strand, within DZA65_RS03340at 707.436 kb on - strand, within DZA65_RS03340at 707.467 kb on - strand, within DZA65_RS03340at 707.518 kb on - strand, within DZA65_RS03340at 707.530 kb on + strand, within DZA65_RS03340at 707.532 kb on + strand, within DZA65_RS03340at 707.551 kb on + strand, within DZA65_RS03340at 707.555 kb on + strand, within DZA65_RS03340

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Per-strain Table

Position Strand Gene LocusTag Fraction Upstate
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704,658 - DZA65_RS03325 0.22 +0.2
704,713 - DZA65_RS03325 0.26 +1.4
704,769 + DZA65_RS03325 0.31 +0.6
704,817 - DZA65_RS03325 0.34 -0.1
704,882 + DZA65_RS03325 0.40 +0.0
704,883 - DZA65_RS03325 0.40 -2.9
704,884 + DZA65_RS03325 0.40 +0.4
704,885 - DZA65_RS03325 0.40 +0.1
704,949 - DZA65_RS03325 0.45 +0.0
705,064 - DZA65_RS03325 0.54 -1.1
705,226 - DZA65_RS03325 0.67 +0.1
705,374 + DZA65_RS03325 0.79 -0.5
705,452 + DZA65_RS03325 0.86 +0.1
705,493 + DZA65_RS03325 0.89 +1.7
705,511 + -2.6
705,512 - -0.3
705,542 + +1.1
705,542 + -0.5
705,543 - +0.5
705,543 - +0.1
705,549 + -0.7
705,578 + -0.1
705,584 + -2.0
705,785 - DZA65_RS03330 0.17 -0.2
705,799 + DZA65_RS03330 0.18 -1.5
705,799 + DZA65_RS03330 0.18 -1.4
705,799 + DZA65_RS03330 0.18 -0.8
705,799 + DZA65_RS03330 0.18 -0.2
705,800 - DZA65_RS03330 0.18 -1.3
705,841 - DZA65_RS03330 0.23 +1.0
705,844 + DZA65_RS03330 0.23 -1.1
705,845 - DZA65_RS03330 0.23 -0.3
705,847 - DZA65_RS03330 0.23 +1.5
705,847 - DZA65_RS03330 0.23 -0.8
705,913 - DZA65_RS03330 0.30 -0.1
705,918 + DZA65_RS03330 0.31 -0.6
705,919 - DZA65_RS03330 0.31 +0.1
705,919 - DZA65_RS03330 0.31 +0.0
705,940 + DZA65_RS03330 0.33 -1.6
705,956 - DZA65_RS03330 0.35 +1.0
706,039 + DZA65_RS03330 0.44 -1.6
706,097 - DZA65_RS03330 0.50 -1.2
706,138 + DZA65_RS03330 0.54 -0.4
706,219 + DZA65_RS03330 0.63 -1.7
706,221 + DZA65_RS03330 0.63 +0.4
706,222 - DZA65_RS03330 0.63 -1.4
706,222 - DZA65_RS03330 0.63 +1.2
706,226 - DZA65_RS03330 0.64 -2.6
706,226 - DZA65_RS03330 0.64 -1.0
706,226 - DZA65_RS03330 0.64 -0.4
706,231 + DZA65_RS03330 0.64 +1.2
706,279 + DZA65_RS03330 0.69 -0.4
706,298 - DZA65_RS03330 0.71 -3.1
706,345 + DZA65_RS03330 0.77 +0.0
706,346 - DZA65_RS03330 0.77 -1.2
706,392 + DZA65_RS03330 0.82 +0.0
706,415 - DZA65_RS03330 0.84 -1.0
706,507 - -2.1
706,716 + DZA65_RS03335 0.23 -1.2
706,731 - DZA65_RS03335 0.25 +0.3
706,739 + DZA65_RS03335 0.27 +0.4
706,740 - DZA65_RS03335 0.27 -0.1
706,761 + DZA65_RS03335 0.30 -2.4
706,913 + DZA65_RS03335 0.53 -1.2
706,913 + DZA65_RS03335 0.53 -0.5
706,914 - DZA65_RS03335 0.53 -1.3
706,917 + DZA65_RS03335 0.54 +0.3
706,917 + DZA65_RS03335 0.54 +3.6
706,917 + DZA65_RS03335 0.54 -0.4
706,936 - DZA65_RS03335 0.57 +0.6
707,061 - DZA65_RS03335 0.75 +0.1
707,189 - -0.2
707,189 - -0.9
707,207 + -1.7
707,276 + -0.1
707,276 + -0.4
707,346 - DZA65_RS03340 0.22 -1.6
707,385 - DZA65_RS03340 0.29 +0.2
707,431 + DZA65_RS03340 0.37 +0.4
707,436 - DZA65_RS03340 0.38 -0.4
707,467 - DZA65_RS03340 0.43 -0.4
707,518 - DZA65_RS03340 0.52 +0.6
707,530 + DZA65_RS03340 0.54 +0.1
707,532 + DZA65_RS03340 0.55 -1.4
707,551 + DZA65_RS03340 0.58 +0.6
707,555 + DZA65_RS03340 0.59 +1.9

Or see this region's nucleotide sequence